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The map label for this gene is rbsR [H]

Identifier: 52141389

GI number: 52141389

Start: 3988163

End: 3989026

Strand: Reverse

Name: rbsR [H]

Synonym: BCZK3860

Alternate gene names: 52141389

Gene position: 3989026-3988163 (Counterclockwise)

Preceding gene: 52141388

Following gene: 52141391

Centisome position: 75.25

GC content: 32.52

Gene sequence:

>864_bases
GTGGCAACTATACGTGATGTTGCAAAATTGGCAGGTGTTTCAGTCGCAACCGTTTCACGAGTTATGAATGAAAAAGGATA
CGTTCATGAGGACACAGTAAAACAAGTAAAGGAAGCAATTGAGGAGTTACGTTATAGGCCAAATAGTGCAGTAAAGCCAT
TATTTAAAGAGAATTCAACAATAATTGCATTACTTGTAGATAATTTATATAATCCATCAAACATCACTTGGCTACATTGT
ATTGAGGAAATAGCATATAAAGAAGGATATCAAATCATTGTTTGTAATATAGAGAATAAAGATAGATGCATACATATGTT
GAAGGAAAATAACGTTGCAGGTGTTATTTTGACAAGATCGGTTTTTAAAAGTATAGGAGAAATTCCACTTCCGTTTGTTG
TGATTGATGAAAAAAAATTGCATGTAAATTATTATGACAGTGGACAAAGAGCAGTCTCTTTATTAAAAGAAAAAGGCTGT
CATTTTCTTGCTTATTTTGATGAGGGAGAAAATAGTGAAGAAATGGAAAATCACATATCAGGATTTTTAGACGCTGTTTG
GGAGGGAGGAATCTCTTATCGAGAAGTATTTGTACAAGGGTATACGAATAAACAGTTTATTACATTATTGCGAAACAATC
CGTATATAGATGGAATTGTAACTGGAAGTGATAAGGTTACTTTTGAGTTAATTCAAGCTGCAAAACATTTAAATATCCGT
ATACCAGATAAATTGAAAATTATTGGACTGAACGGGAGTATAGACAGTGAGTGGATAGGACCGTCATTTATGAAAATTGA
AAGTTGTATCGAAGAAAATGGGGAGATAGCGTTGCAACAATTAAAAGAAAAAATAAAAAAGTAA

Upstream 100 bases:

>100_bases
ATGTAACAATTTTCAGAAATATAAGTTATTAACCTTGACGAATATTGTAATTTAGGTTACCGTAAAATTGTAATCTATTA
CCATATTAAGGGGTGACGAT

Downstream 100 bases:

>100_bases
AAGGTGCGTATAAAACGCACCTTTTATAATGTAATCGCGGCAATAAAGCCAAATATAAGTAAAGGTATATTGTAATGTAG
AAAAGTTGGTACACATGTAT

Product: ribose operon repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MATIRDVAKLAGVSVATVSRVMNEKGYVHEDTVKQVKEAIEELRYRPNSAVKPLFKENSTIIALLVDNLYNPSNITWLHC
IEEIAYKEGYQIIVCNIENKDRCIHMLKENNVAGVILTRSVFKSIGEIPLPFVVIDEKKLHVNYYDSGQRAVSLLKEKGC
HFLAYFDEGENSEEMENHISGFLDAVWEGGISYREVFVQGYTNKQFITLLRNNPYIDGIVTGSDKVTFELIQAAKHLNIR
IPDKLKIIGLNGSIDSEWIGPSFMKIESCIEENGEIALQQLKEKIKK

Sequences:

>Translated_287_residues
MATIRDVAKLAGVSVATVSRVMNEKGYVHEDTVKQVKEAIEELRYRPNSAVKPLFKENSTIIALLVDNLYNPSNITWLHC
IEEIAYKEGYQIIVCNIENKDRCIHMLKENNVAGVILTRSVFKSIGEIPLPFVVIDEKKLHVNYYDSGQRAVSLLKEKGC
HFLAYFDEGENSEEMENHISGFLDAVWEGGISYREVFVQGYTNKQFITLLRNNPYIDGIVTGSDKVTFELIQAAKHLNIR
IPDKLKIIGLNGSIDSEWIGPSFMKIESCIEENGEIALQQLKEKIKK
>Mature_286_residues
ATIRDVAKLAGVSVATVSRVMNEKGYVHEDTVKQVKEAIEELRYRPNSAVKPLFKENSTIIALLVDNLYNPSNITWLHCI
EEIAYKEGYQIIVCNIENKDRCIHMLKENNVAGVILTRSVFKSIGEIPLPFVVIDEKKLHVNYYDSGQRAVSLLKEKGCH
FLAYFDEGENSEEMENHISGFLDAVWEGGISYREVFVQGYTNKQFITLLRNNPYIDGIVTGSDKVTFELIQAAKHLNIRI
PDKLKIIGLNGSIDSEWIGPSFMKIESCIEENGEIALQQLKEKIKK

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=311, Percent_Identity=25.08038585209, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787948, Length=317, Percent_Identity=24.2902208201893, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1789202, Length=289, Percent_Identity=23.1833910034602, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787580, Length=303, Percent_Identity=25.4125412541254, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1790715, Length=308, Percent_Identity=24.3506493506494, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789068, Length=298, Percent_Identity=24.1610738255034, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788474, Length=302, Percent_Identity=23.5099337748344, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI48994940, Length=305, Percent_Identity=23.6065573770492, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786268, Length=144, Percent_Identity=29.8611111111111, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 32555; Mature: 32424

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATIRDVAKLAGVSVATVSRVMNEKGYVHEDTVKQVKEAIEELRYRPNSAVKPLFKENST
CCCHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCE
IIALLVDNLYNPSNITWLHCIEEIAYKEGYQIIVCNIENKDRCIHMLKENNVAGVILTRS
EEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHCCCEEEEEEEHH
VFKSIGEIPLPFVVIDEKKLHVNYYDSGQRAVSLLKEKGCHFLAYFDEGENSEEMENHIS
HHHHHCCCCCCEEEECCCEEEEEEECCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHH
GFLDAVWEGGISYREVFVQGYTNKQFITLLRNNPYIDGIVTGSDKVTFELIQAAKHLNIR
HHHHHHHHCCCCEEHHEEECCCCCEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHCCEE
IPDKLKIIGLNGSIDSEWIGPSFMKIESCIEENGEIALQQLKEKIKK
CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
ATIRDVAKLAGVSVATVSRVMNEKGYVHEDTVKQVKEAIEELRYRPNSAVKPLFKENST
CCHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCE
IIALLVDNLYNPSNITWLHCIEEIAYKEGYQIIVCNIENKDRCIHMLKENNVAGVILTRS
EEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHCCCEEEEEEEHH
VFKSIGEIPLPFVVIDEKKLHVNYYDSGQRAVSLLKEKGCHFLAYFDEGENSEEMENHIS
HHHHHCCCCCCEEEECCCEEEEEEECCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHH
GFLDAVWEGGISYREVFVQGYTNKQFITLLRNNPYIDGIVTGSDKVTFELIQAAKHLNIR
HHHHHHHHCCCCEEHHEEECCCCCEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHCCEE
IPDKLKIIGLNGSIDSEWIGPSFMKIESCIEENGEIALQQLKEKIKK
CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]