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The map label for this gene is 52141211

Identifier: 52141211

GI number: 52141211

Start: 4147637

End: 4148758

Strand: Reverse

Name: 52141211

Synonym: BCZK4039

Alternate gene names: NA

Gene position: 4148758-4147637 (Counterclockwise)

Preceding gene: 52141209

Following gene: 52141217

Centisome position: 78.26

GC content: 38.32

Gene sequence:

>1122_bases
ATGAGTAAAATTCCAAATGGCCATGAAATTATTTCTTTATTTGAAAGTATGTATCCGAAGCATTTGGCGATGGAAGGAGA
TAAGATTGGCCTGCAGATTGGAGCGCTTAATAAACCCGTGCAGCACGTATTAATTGCGTTAGATGTAACGGAAGAAGTTG
TGGATGAAGCAATTCAATTAGGAGCGAATGTCATTATTGCGCATCATCCTTTAATTTTTAACCCGCTAAAAGCGATTCAT
ACAGATAAGGCGTATGGGAAAATTATTGAAAAGTGTATTAAAAATGATATTGCAATCTATGCAGCACATACAAATGTGGA
TATTGCTAAGGGCGGGGTAAATGATTTACTTGCTGAGGCGTTAGGATTGCAAAATACAGAAGTTTTGGCACCGACATATG
CAGAAGAAATGAAAAAAATTGTTGTGTTTGTGCCTGAAACTCATGCAGAAGAAGTAAGAAAAGCATTAGGAGACGCAGGC
GCTGGTCATATCGGCAATTATAGCCACTGTACGTTTAGTAGCGAGGGTACAGGCACGTTTATACCTCAAGAGGGAACAAA
TCCTTATATCGGGGAAACTGGGCAGTTAGAACGCGTGGAAGAAGTGCGAATCGAAACGATTATTCCAGCTTCATTCCAGC
GAAAAGTAATTAAAGCAATGGTAACGGCACATCCATATGAAGAAGTAGCATATGATGTGTATCCACTTGATAACAAAGGT
GAAACATTAGGGCTTGGAAAAATAGGATATTTACAAGAAGAAATGACACTTGGACAATTTGCGGAACATGTAAAGAAGTC
ATTAGATGTAAAGGGTGCGCGAGTTGTTGGGAAATTAGATGATAAAGTGCGCAAAGTAGCTGTACTTGGTGGCGATGGTA
ACAAATACATCAATCAAGCTAAATTTAAAGGAGCAGATGTATATGTAACGGGGGACATGTATTATCATGTTGCTCATGAT
GCGATGATGCTCGGTTTAAATATAGTTGACCCAGGACATAACGTTGAAAAGGTAATGAAGCAAGGTGTACAAAAGCAATT
ACAAGAAAAAGTGGATGCAAAGAAACTTAATGTAAACATTCATGCTTCGCAGTTACATACAGATCCATTTACATTTGTAT
AA

Upstream 100 bases:

>100_bases
ATATTTTAAAGCAGTTAGAACGTGCGGCTGATTCTGAGGAAACAAAAGCGAAGCGCGCGGAAGTAGAAGCGAAAATGAAA
ATGATAGGGGAGGTTTTATC

Downstream 100 bases:

>100_bases
GAAAAATAAAACCGTTGCTCATATAGGCAACGGTTTTTATTATTGTTCTTTTTTCACTTTTACACGAGGTAATATTTTTT
GTAACGGTACTTTTCGAACT

Product: NIF3-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 372

Protein sequence:

>373_residues
MSKIPNGHEIISLFESMYPKHLAMEGDKIGLQIGALNKPVQHVLIALDVTEEVVDEAIQLGANVIIAHHPLIFNPLKAIH
TDKAYGKIIEKCIKNDIAIYAAHTNVDIAKGGVNDLLAEALGLQNTEVLAPTYAEEMKKIVVFVPETHAEEVRKALGDAG
AGHIGNYSHCTFSSEGTGTFIPQEGTNPYIGETGQLERVEEVRIETIIPASFQRKVIKAMVTAHPYEEVAYDVYPLDNKG
ETLGLGKIGYLQEEMTLGQFAEHVKKSLDVKGARVVGKLDDKVRKVAVLGGDGNKYINQAKFKGADVYVTGDMYYHVAHD
AMMLGLNIVDPGHNVEKVMKQGVQKQLQEKVDAKKLNVNIHASQLHTDPFTFV

Sequences:

>Translated_373_residues
MSKIPNGHEIISLFESMYPKHLAMEGDKIGLQIGALNKPVQHVLIALDVTEEVVDEAIQLGANVIIAHHPLIFNPLKAIH
TDKAYGKIIEKCIKNDIAIYAAHTNVDIAKGGVNDLLAEALGLQNTEVLAPTYAEEMKKIVVFVPETHAEEVRKALGDAG
AGHIGNYSHCTFSSEGTGTFIPQEGTNPYIGETGQLERVEEVRIETIIPASFQRKVIKAMVTAHPYEEVAYDVYPLDNKG
ETLGLGKIGYLQEEMTLGQFAEHVKKSLDVKGARVVGKLDDKVRKVAVLGGDGNKYINQAKFKGADVYVTGDMYYHVAHD
AMMLGLNIVDPGHNVEKVMKQGVQKQLQEKVDAKKLNVNIHASQLHTDPFTFV
>Mature_372_residues
SKIPNGHEIISLFESMYPKHLAMEGDKIGLQIGALNKPVQHVLIALDVTEEVVDEAIQLGANVIIAHHPLIFNPLKAIHT
DKAYGKIIEKCIKNDIAIYAAHTNVDIAKGGVNDLLAEALGLQNTEVLAPTYAEEMKKIVVFVPETHAEEVRKALGDAGA
GHIGNYSHCTFSSEGTGTFIPQEGTNPYIGETGQLERVEEVRIETIIPASFQRKVIKAMVTAHPYEEVAYDVYPLDNKGE
TLGLGKIGYLQEEMTLGQFAEHVKKSLDVKGARVVGKLDDKVRKVAVLGGDGNKYINQAKFKGADVYVTGDMYYHVAHDA
MMLGLNIVDPGHNVEKVMKQGVQKQLQEKVDAKKLNVNIHASQLHTDPFTFV

Specific function: Unknown

COG id: COG0327

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0135 (NIF3) family [H]

Homologues:

Organism=Homo sapiens, GI215272360, Length=380, Percent_Identity=25.5263157894737, Blast_Score=100, Evalue=4e-21,
Organism=Homo sapiens, GI56605983, Length=380, Percent_Identity=25.5263157894737, Blast_Score=100, Evalue=4e-21,
Organism=Homo sapiens, GI209862879, Length=368, Percent_Identity=26.0869565217391, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI215272362, Length=115, Percent_Identity=33.0434782608696, Blast_Score=74, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6321217, Length=139, Percent_Identity=35.2517985611511, Blast_Score=72, Evalue=1e-13,
Organism=Drosophila melanogaster, GI19921430, Length=123, Percent_Identity=35.7723577235772, Blast_Score=85, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002678
- InterPro:   IPR017221 [H]

Pfam domain/function: PF01784 NIF3 [H]

EC number: NA

Molecular weight: Translated: 40895; Mature: 40763

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKIPNGHEIISLFESMYPKHLAMEGDKIGLQIGALNKPVQHVLIALDVTEEVVDEAIQL
CCCCCCHHHHHHHHHHHCCHHHCCCCCEEEEEEECCCCCHHHEEEEEHHHHHHHHHHHHC
GANVIIAHHPLIFNPLKAIHTDKAYGKIIEKCIKNDIAIYAAHTNVDIAKGGVNDLLAEA
CCCEEEEECCHHHCCHHHHHCCHHHHHHHHHHHCCCEEEEEEECCCEEECCCHHHHHHHH
LGLQNTEVLAPTYAEEMKKIVVFVPETHAEEVRKALGDAGAGHIGNYSHCTFSSEGTGTF
HCCCCCEEECCHHHHHCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEEECCCCCEEE
IPQEGTNPYIGETGQLERVEEVRIETIIPASFQRKVIKAMVTAHPYEEVAYDVYPLDNKG
CCCCCCCCCCCCCCCHHHHHHHHHHEECCCHHHHHHHHHHHHCCCHHHHCEEEEECCCCC
ETLGLGKIGYLQEEMTLGQFAEHVKKSLDVKGARVVGKLDDKVRKVAVLGGDGNKYINQA
CEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHEEHHHHHCEEEEEEECCCCCHHHHHH
KFKGADVYVTGDMYYHVAHDAMMLGLNIVDPGHNVEKVMKQGVQKQLQEKVDAKKLNVNI
HCCCCEEEEECCEEEEEHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHCHHHEEEEE
HASQLHTDPFTFV
EHHEECCCCCCCC
>Mature Secondary Structure 
SKIPNGHEIISLFESMYPKHLAMEGDKIGLQIGALNKPVQHVLIALDVTEEVVDEAIQL
CCCCCHHHHHHHHHHHCCHHHCCCCCEEEEEEECCCCCHHHEEEEEHHHHHHHHHHHHC
GANVIIAHHPLIFNPLKAIHTDKAYGKIIEKCIKNDIAIYAAHTNVDIAKGGVNDLLAEA
CCCEEEEECCHHHCCHHHHHCCHHHHHHHHHHHCCCEEEEEEECCCEEECCCHHHHHHHH
LGLQNTEVLAPTYAEEMKKIVVFVPETHAEEVRKALGDAGAGHIGNYSHCTFSSEGTGTF
HCCCCCEEECCHHHHHCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEEECCCCCEEE
IPQEGTNPYIGETGQLERVEEVRIETIIPASFQRKVIKAMVTAHPYEEVAYDVYPLDNKG
CCCCCCCCCCCCCCCHHHHHHHHHHEECCCHHHHHHHHHHHHCCCHHHHCEEEEECCCCC
ETLGLGKIGYLQEEMTLGQFAEHVKKSLDVKGARVVGKLDDKVRKVAVLGGDGNKYINQA
CEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHEEHHHHHCEEEEEEECCCCCHHHHHH
KFKGADVYVTGDMYYHVAHDAMMLGLNIVDPGHNVEKVMKQGVQKQLQEKVDAKKLNVNI
HCCCCEEEEECCEEEEEHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHCHHHEEEEE
HASQLHTDPFTFV
EHHEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]