Click here to switch to the map view.

The map label for this gene is xerD [H]

Identifier: 52141019

GI number: 52141019

Start: 4342341

End: 4343309

Strand: Reverse

Name: xerD [H]

Synonym: BCZK4231

Alternate gene names: 52141019

Gene position: 4343309-4342341 (Counterclockwise)

Preceding gene: 52141020

Following gene: 52141018

Centisome position: 81.94

GC content: 37.77

Gene sequence:

>969_bases
ATGTCTAAAAGACGAGATTCTTTAACGGTTAGCGAAGACTTATCGAATATCTTTGACCGGAAGCTGGAAAGGAAACAAGT
GAAGGGTCTAACTATTAAGAAGGCTCTCTCTACAGTGATACGTCAAATGAGAGCAACAGGCTTGCGTGACCGTACTATTA
GCGACTATGAGTTGCATATTGGTCATTTTATGAGTGTGACGGGTGCTGAGTTTCTCCAAGAGTTGACCGTTGAACATATC
TATTTGTGGCTTTCATCTATGAATGTCAGTAATCAAACCAAGTTAACACGTTTGAAGTGTCTCAAAGCGTTTCTGGGACG
TTGTTTCGATAACGGTTGGATTGAGATTAACTTTTGGAAGAGTATCAAAATAAAGGTTGATAGCCCTGTAAAAGAGGGGG
CAACGGATAGGGAAATTAATCTTTTGCTTTCTATTCTAGATTTAACTCGCTTCATAGAATTGAGGGATGCTGCTTCTGTA
TTACTTATGTATCAGACGGGAATACGAGTTGGGACGTTGTCTCAATTGGAGCATAAACATGTGAACTTAGAAAATAAAGT
GCTACGTATTGATGGTGGAATTATTAAGAATCATGAATCTATACATTTACCCTTTGATGATGTTTTGGCTAGAGTCTTAG
GTGCTCTTATGAAGCAAAACGACATTATCAGGAAAGAGTGCCATATAAAGAATGATTACTTATTCATTACGAAAAATGGA
GGGCGGATCGCTACTAGTCCGACAAATAACAATATAACTAAGAGGCTGAGTAAACATTCTAAGGATTACGGTCTGAAGAA
TATAAATCCTCATGCCTTACGGAGAGGGTTTGCGAAGAATTTACTTAAGAAGGGAGCAAATATAGCTTTAATATCTAAGG
CTCTTGGTCATAGTGATCTAGCCGTTACAACAAGATATTTGCATTTAGATAAGGAAGAAGTAGCTGAAAGTCTTAGAAAC
TTCTTGTAA

Upstream 100 bases:

>100_bases
GCTAACAATCGGGTAGTAAACCCCGTCAAATAAGTCTTTTAATTCGAAAGTTGAAACGTACAGTGTGCGGTCAACATCGA
GTTAGGAGGCTTATTTTTTT

Downstream 100 bases:

>100_bases
ATAAAATAAGAGCATCTTGGCGGATGCTCCTTGCAGGGTAGACTGTTGGCGCAGTCCGTAACCCTAAATTTCAGCTTAAA
ACTAAATAACGGATAATCCC

Product: integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 321

Protein sequence:

>322_residues
MSKRRDSLTVSEDLSNIFDRKLERKQVKGLTIKKALSTVIRQMRATGLRDRTISDYELHIGHFMSVTGAEFLQELTVEHI
YLWLSSMNVSNQTKLTRLKCLKAFLGRCFDNGWIEINFWKSIKIKVDSPVKEGATDREINLLLSILDLTRFIELRDAASV
LLMYQTGIRVGTLSQLEHKHVNLENKVLRIDGGIIKNHESIHLPFDDVLARVLGALMKQNDIIRKECHIKNDYLFITKNG
GRIATSPTNNNITKRLSKHSKDYGLKNINPHALRRGFAKNLLKKGANIALISKALGHSDLAVTTRYLHLDKEEVAESLRN
FL

Sequences:

>Translated_322_residues
MSKRRDSLTVSEDLSNIFDRKLERKQVKGLTIKKALSTVIRQMRATGLRDRTISDYELHIGHFMSVTGAEFLQELTVEHI
YLWLSSMNVSNQTKLTRLKCLKAFLGRCFDNGWIEINFWKSIKIKVDSPVKEGATDREINLLLSILDLTRFIELRDAASV
LLMYQTGIRVGTLSQLEHKHVNLENKVLRIDGGIIKNHESIHLPFDDVLARVLGALMKQNDIIRKECHIKNDYLFITKNG
GRIATSPTNNNITKRLSKHSKDYGLKNINPHALRRGFAKNLLKKGANIALISKALGHSDLAVTTRYLHLDKEEVAESLRN
FL
>Mature_321_residues
SKRRDSLTVSEDLSNIFDRKLERKQVKGLTIKKALSTVIRQMRATGLRDRTISDYELHIGHFMSVTGAEFLQELTVEHIY
LWLSSMNVSNQTKLTRLKCLKAFLGRCFDNGWIEINFWKSIKIKVDSPVKEGATDREINLLLSILDLTRFIELRDAASVL
LMYQTGIRVGTLSQLEHKHVNLENKVLRIDGGIIKNHESIHLPFDDVLARVLGALMKQNDIIRKECHIKNDYLFITKNGG
RIATSPTNNNITKRLSKHSKDYGLKNINPHALRRGFAKNLLKKGANIALISKALGHSDLAVTTRYLHLDKEEVAESLRNF
L

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4973

COG function: function code L; Site-specific recombinase XerC

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=221, Percent_Identity=27.6018099547511, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1789261, Length=182, Percent_Identity=25.8241758241758, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 36753; Mature: 36622

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKRRDSLTVSEDLSNIFDRKLERKQVKGLTIKKALSTVIRQMRATGLRDRTISDYELHI
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEHH
GHFMSVTGAEFLQELTVEHIYLWLSSMNVSNQTKLTRLKCLKAFLGRCFDNGWIEINFWK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEE
SIKIKVDSPVKEGATDREINLLLSILDLTRFIELRDAASVLLMYQTGIRVGTLSQLEHKH
EEEEEECCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEHHHHCCCCCCCHHHHHHHH
VNLENKVLRIDGGIIKNHESIHLPFDDVLARVLGALMKQNDIIRKECHIKNDYLFITKNG
CCCCCCEEEECCCEEECCCEEECCHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEECCC
GRIATSPTNNNITKRLSKHSKDYGLKNINPHALRRGFAKNLLKKGANIALISKALGHSDL
CEEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHCCCCH
AVTTRYLHLDKEEVAESLRNFL
HHHHHHHCCCHHHHHHHHHHCC
>Mature Secondary Structure 
SKRRDSLTVSEDLSNIFDRKLERKQVKGLTIKKALSTVIRQMRATGLRDRTISDYELHI
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEHH
GHFMSVTGAEFLQELTVEHIYLWLSSMNVSNQTKLTRLKCLKAFLGRCFDNGWIEINFWK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEE
SIKIKVDSPVKEGATDREINLLLSILDLTRFIELRDAASVLLMYQTGIRVGTLSQLEHKH
EEEEEECCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEHHHHCCCCCCCHHHHHHHH
VNLENKVLRIDGGIIKNHESIHLPFDDVLARVLGALMKQNDIIRKECHIKNDYLFITKNG
CCCCCCEEEECCCEEECCCEEECCHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEECCC
GRIATSPTNNNITKRLSKHSKDYGLKNINPHALRRGFAKNLLKKGANIALISKALGHSDL
CEEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHCCCCH
AVTTRYLHLDKEEVAESLRNFL
HHHHHHHCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA