Click here to switch to the map view.

The map label for this gene is sigW [H]

Identifier: 52140841

GI number: 52140841

Start: 4515840

End: 4516355

Strand: Reverse

Name: sigW [H]

Synonym: BCZK4409

Alternate gene names: 52140841

Gene position: 4516355-4515840 (Counterclockwise)

Preceding gene: 52140842

Following gene: 52140843

Centisome position: 85.2

GC content: 35.85

Gene sequence:

>516_bases
ATGCTTGCGTATCAAAGGGGAGATAAGCAGGCTGGGGAAAAACTATACGTTTTAATTAAACCAGCGCTATACACATTTTT
ATATCGATTTAACCGAGATGAACAATTAAGTATCGACCTCGTGCAAGATACGTTTTTGACGTTAGAACGAAAGAAACATA
TGTATGAACTTGAAAAAGGAAAAATAAAAACGTATTTATTTCAAATCGGTTATCGTCTTATGATTAATAAATTAAATAGG
AGAAAAAAGTGGCGTACGCTTTTGCCGTTTTTAGCGCCGATTCCGGAAAAAGAATTCTCTCACGAAGATCGGCTCACAGT
AAGAGAAGCAATTTTGAAAGTTCCAGAAGAGCAAAGAGCGGTCCTAATCCTTTCTTATTATCATGATATGCAACAAAAAG
AGATTGCAGAAATATTAAACATTCCGATTGGAACAGTGAAGTCGAGACTTCATAACGGGATAAAGAAATTGAAACAATTG
CTGGAGGTGGACGAAATTGAGCGAAAATCCCTTTAA

Upstream 100 bases:

>100_bases
ATTGTCGCAAGTTGCTATTTAATTTCCCGCATTTCGTTAACATTAAAAGGAATAAAGGAGATCAAAAATCATGGCGTAGA
TTGGGATTGAGGAAGAGCTC

Downstream 100 bases:

>100_bases
GAGTGAATATAAATTAAAACAGCATTTAGATAGTGACCATGTAGAAGTACCGGACTTTCCAAAAACGGTAAGTCGATTCG
ATCGATTAATCGGATTTCTT

Product: RNA polymerase sigma-70 factor

Products: NA

Alternate protein names: Sigma-W factor [H]

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MLAYQRGDKQAGEKLYVLIKPALYTFLYRFNRDEQLSIDLVQDTFLTLERKKHMYELEKGKIKTYLFQIGYRLMINKLNR
RKKWRTLLPFLAPIPEKEFSHEDRLTVREAILKVPEEQRAVLILSYYHDMQQKEIAEILNIPIGTVKSRLHNGIKKLKQL
LEVDEIERKSL

Sequences:

>Translated_171_residues
MLAYQRGDKQAGEKLYVLIKPALYTFLYRFNRDEQLSIDLVQDTFLTLERKKHMYELEKGKIKTYLFQIGYRLMINKLNR
RKKWRTLLPFLAPIPEKEFSHEDRLTVREAILKVPEEQRAVLILSYYHDMQQKEIAEILNIPIGTVKSRLHNGIKKLKQL
LEVDEIERKSL
>Mature_171_residues
MLAYQRGDKQAGEKLYVLIKPALYTFLYRFNRDEQLSIDLVQDTFLTLERKKHMYELEKGKIKTYLFQIGYRLMINKLNR
RKKWRTLLPFLAPIPEKEFSHEDRLTVREAILKVPEEQRAVLILSYYHDMQQKEIAEILNIPIGTVKSRLHNGIKKLKQL
LEVDEIERKSL

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Sigma-W controls genes involved in transport processes and detoxification [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014294
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20476; Mature: 20476

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAYQRGDKQAGEKLYVLIKPALYTFLYRFNRDEQLSIDLVQDTFLTLERKKHMYELEKG
CCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KIKTYLFQIGYRLMINKLNRRKKWRTLLPFLAPIPEKEFSHEDRLTVREAILKVPEEQRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHH
VLILSYYHDMQQKEIAEILNIPIGTVKSRLHNGIKKLKQLLEVDEIERKSL
EEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLAYQRGDKQAGEKLYVLIKPALYTFLYRFNRDEQLSIDLVQDTFLTLERKKHMYELEKG
CCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KIKTYLFQIGYRLMINKLNRRKKWRTLLPFLAPIPEKEFSHEDRLTVREAILKVPEEQRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHH
VLILSYYHDMQQKEIAEILNIPIGTVKSRLHNGIKKLKQLLEVDEIERKSL
EEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274029; 9384377; 12207695 [H]