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The map label for this gene is ytlD [H]

Identifier: 52140717

GI number: 52140717

Start: 4630229

End: 4631035

Strand: Direct

Name: ytlD [H]

Synonym: BCZK4536

Alternate gene names: 52140717

Gene position: 4630229-4631035 (Clockwise)

Preceding gene: 52140720

Following gene: 52140714

Centisome position: 87.35

GC content: 41.02

Gene sequence:

>807_bases
TTGGATAATATAAAGCAACTACATGAACAGTTTCGGAAAAAAGAACGCAGGCGCGCATGGTTAGCACGCTCTTTGCAGCT
TTTACTGCTCATTCTTTTCTTTGCACTATGGGAAATAGCTAGCAAAAAAGAATGGATTGATCCTTTACTCTTTAGCTCTC
CTTCAAGCATTTGGGATCTCTTCCTTAATAAATGGATGGACGGTTCGCTTTGGATCCACATATGGACGACATTACTTGAA
ACGGGAGTAGGCTTCATTCTTGGAACAGTGCTCGGGGCCATTATTGCTACTTTCCTTTGGTGGATACCCCTTCTCGCCCG
CGTACTTGATCCATATCTCGTCGTCCTAAACGCCATGCCAAAAGTGGCACTTGGGCCGATTATCATTGTAATCTTCGGTC
CAAATATTTCTTCGTCAATTGCAATGGGAGTAATCATTTCCATCATCATTACCATTCTCGTTATTTACAGCGCATTCCAA
GAAGTCGATTCTAACTATATAAAAGTGATGGACACATTTGGCGCAAATAAATGGCAATGTTATAAGCAAGTAGTTCTCCC
TGCATCTTTCCCAGCCATTATTTCAACGTTAAAAGTGAACGTTGGATTATCGTGGGTCGGTGTTATATTCGGCGAACTTC
TCGTCTCTAAACAAGGTCTTGGCTACTTAATTAGCTACGGGTTCCAAGTATTTAATTTTACTCTCGTCTTACTGAGCGTA
CTACTCACCTGTGTCCTCGCAACACTTATGTATGTGTTTGTTGAGGCATTTGAAAAACTTCTAATTGGTAAACGAAAAAA
AAGCTGA

Upstream 100 bases:

>100_bases
ATCGTCCCAGAAAGTATCCGTTCCTTATCACCGTTAGAATCACGCCACCATCATGACTTCCCATCCCTCTTCCAAAATAT
ATGGAAGGAGCTGGAGCGCC

Downstream 100 bases:

>100_bases
CTTAGGGCGATAGACTATAGTCAGCTTCTTTCTTTTACTTTTTATCACACATCTTTGTTTCATTTTTAACGTTTCCATCC
GCAACCGTAACTGTATGGAA

Product: ABC transporter, permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MDNIKQLHEQFRKKERRRAWLARSLQLLLLILFFALWEIASKKEWIDPLLFSSPSSIWDLFLNKWMDGSLWIHIWTTLLE
TGVGFILGTVLGAIIATFLWWIPLLARVLDPYLVVLNAMPKVALGPIIIVIFGPNISSSIAMGVIISIIITILVIYSAFQ
EVDSNYIKVMDTFGANKWQCYKQVVLPASFPAIISTLKVNVGLSWVGVIFGELLVSKQGLGYLISYGFQVFNFTLVLLSV
LLTCVLATLMYVFVEAFEKLLIGKRKKS

Sequences:

>Translated_268_residues
MDNIKQLHEQFRKKERRRAWLARSLQLLLLILFFALWEIASKKEWIDPLLFSSPSSIWDLFLNKWMDGSLWIHIWTTLLE
TGVGFILGTVLGAIIATFLWWIPLLARVLDPYLVVLNAMPKVALGPIIIVIFGPNISSSIAMGVIISIIITILVIYSAFQ
EVDSNYIKVMDTFGANKWQCYKQVVLPASFPAIISTLKVNVGLSWVGVIFGELLVSKQGLGYLISYGFQVFNFTLVLLSV
LLTCVLATLMYVFVEAFEKLLIGKRKKS
>Mature_268_residues
MDNIKQLHEQFRKKERRRAWLARSLQLLLLILFFALWEIASKKEWIDPLLFSSPSSIWDLFLNKWMDGSLWIHIWTTLLE
TGVGFILGTVLGAIIATFLWWIPLLARVLDPYLVVLNAMPKVALGPIIIVIFGPNISSSIAMGVIISIIITILVIYSAFQ
EVDSNYIKVMDTFGANKWQCYKQVVLPASFPAIISTLKVNVGLSWVGVIFGELLVSKQGLGYLISYGFQVFNFTLVLLSV
LLTCVLATLMYVFVEAFEKLLIGKRKKS

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0600

COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI87081802, Length=246, Percent_Identity=25.2032520325203, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1786564, Length=266, Percent_Identity=22.1804511278195, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30333; Mature: 30333

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNIKQLHEQFRKKERRRAWLARSLQLLLLILFFALWEIASKKEWIDPLLFSSPSSIWDL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
FLNKWMDGSLWIHIWTTLLETGVGFILGTVLGAIIATFLWWIPLLARVLDPYLVVLNAMP
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KVALGPIIIVIFGPNISSSIAMGVIISIIITILVIYSAFQEVDSNYIKVMDTFGANKWQC
CHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHH
YKQVVLPASFPAIISTLKVNVGLSWVGVIFGELLVSKQGLGYLISYGFQVFNFTLVLLSV
HHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
LLTCVLATLMYVFVEAFEKLLIGKRKKS
HHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDNIKQLHEQFRKKERRRAWLARSLQLLLLILFFALWEIASKKEWIDPLLFSSPSSIWDL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
FLNKWMDGSLWIHIWTTLLETGVGFILGTVLGAIIATFLWWIPLLARVLDPYLVVLNAMP
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KVALGPIIIVIFGPNISSSIAMGVIISIIITILVIYSAFQEVDSNYIKVMDTFGANKWQC
CHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHH
YKQVVLPASFPAIISTLKVNVGLSWVGVIFGELLVSKQGLGYLISYGFQVFNFTLVLLSV
HHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
LLTCVLATLMYVFVEAFEKLLIGKRKKS
HHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]