Click here to switch to the map view.

The map label for this gene is cydA [H]

Identifier: 52140708

GI number: 52140708

Start: 4637728

End: 4639077

Strand: Direct

Name: cydA [H]

Synonym: BCZK4547

Alternate gene names: 52140708

Gene position: 4637728-4639077 (Clockwise)

Preceding gene: 52140709

Following gene: 52140706

Centisome position: 87.49

GC content: 38.0

Gene sequence:

>1350_bases
ATGTCCGACGTTCTGTTACTGAGTCGTTTTCAATTTGCAATTACTATTTTTTATCACTTTTTATTTGTACCTTTGACAAT
CGGACTTGTCATTTTAGTAGCATGTATGGAAACTCAATACGCCCGCACATTGAATCCAACATACCGCAAAATGGCAAATT
TCTGGGGTAAATTATTTACAATTAACTTCGTAATGGGGATTATAACTGGGATTACGATGGAATTCCAATTTGGAACAAAC
TGGTCTGAGTACTCCAAATATATGGGAGATATTTTCGGATCCCCTCTCGCAATCGAAGCACTCGTTGCCTTCTTCTTAGA
ATCTACTTTCATGGGAATATGGTTATTCGGTAAAGACAAAATTTCACCAAAGTTCCGTGCCTTCTGTATGTGGATGGTTG
CACTTGGAACAAATATTTCCGCCCTTTGGATTATTACAGCAAACGGCTTTATGCAAAACCCAGTTGGCTACGTCGTGCGT
AACGGCCGCGCTGAATTAAATGATTTCTGGGCACTCGTTACAAATCCATATGCGTGGAATATGTTCTTCCATACTGTAGT
TGGTTGTTATATTGTTGGTGCTTTCTTCGTTATGGCAATTAGTGCCTATCACTTATTACGTAAAAATGAAGTTGAATTCT
TCAAAAAATCATTTAAGTTTGGCTTAATGTTAGGCTTATTCGCCGCAACAATTACACCGTTTATGGGACATCAATCTGGT
GTATCAGCAGCTAAATATCAACCAGCTAAAGGTGCTGCGATGGAAGCTGTTTGGGAAACTGGAAAAGGACAAGGCTTCTC
GATTGTTCAAATTCCTGATGTAAAAAATGAAAAGAACTTTGAATTCCTTACGATTCCAAAGTTAGGAAGTTTCTTCTATA
CAAATTCATTTGATGGCGAAATTGTTGGTTTAAAAGATATTCCGAAAGAAGATCGTCCAAATGTTAACCTTGTGTACTAT
AGCTTCCGCTTAATGGTTGCACTTGGTATGTTCTTTATGGCATTAACTTGGTACGGTTTCTACTTAAACCGAAAAGGAAA
ACTGGAAAACTCAAAACGTTACTTAAAAATTACAATATGGTCTGTTTTACTACCATATATCGCAATTAACGCTGGTTGGA
TTGTTGCCGAAGTAGGTCGTCAACCATGGACAGTTTATAAACTAATGCGTACAGCAGAATCTGTATCACCTATATCTGTC
CCGCAAATTTGGTTCTCTTTAATTAGTTTAATCTTGTTCTACACTTTACTTTTAATCGCAGACGTATATTTAATGCTGAA
GTTCGCGAAAAAAGGACCAGCAGCACTAGAAGAACCTGCTACTAAGGGAGGCGTGGCCCATGTCTCATGA

Upstream 100 bases:

>100_bases
CAAAATATACACACAGCTTTGTAACAAGTCTCACATACTATAATCCTATTTTCACTATAAACTAATTGTAGATAATGTAA
AAAAGGAGTGAATATTTATT

Downstream 100 bases:

>100_bases
TATGCTTGCAATCATCTGGTTTGGTCTATGGGGCGTGATTTGGACAGTTTACTTCATTCTTGATGGGTATGCACTTGGTA
ACGGAATGATTTTTCCTTTC

Product: cytochrome d ubiquinol oxidase, subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 449; Mature: 448

Protein sequence:

>449_residues
MSDVLLLSRFQFAITIFYHFLFVPLTIGLVILVACMETQYARTLNPTYRKMANFWGKLFTINFVMGIITGITMEFQFGTN
WSEYSKYMGDIFGSPLAIEALVAFFLESTFMGIWLFGKDKISPKFRAFCMWMVALGTNISALWIITANGFMQNPVGYVVR
NGRAELNDFWALVTNPYAWNMFFHTVVGCYIVGAFFVMAISAYHLLRKNEVEFFKKSFKFGLMLGLFAATITPFMGHQSG
VSAAKYQPAKGAAMEAVWETGKGQGFSIVQIPDVKNEKNFEFLTIPKLGSFFYTNSFDGEIVGLKDIPKEDRPNVNLVYY
SFRLMVALGMFFMALTWYGFYLNRKGKLENSKRYLKITIWSVLLPYIAINAGWIVAEVGRQPWTVYKLMRTAESVSPISV
PQIWFSLISLILFYTLLLIADVYLMLKFAKKGPAALEEPATKGGVAHVS

Sequences:

>Translated_449_residues
MSDVLLLSRFQFAITIFYHFLFVPLTIGLVILVACMETQYARTLNPTYRKMANFWGKLFTINFVMGIITGITMEFQFGTN
WSEYSKYMGDIFGSPLAIEALVAFFLESTFMGIWLFGKDKISPKFRAFCMWMVALGTNISALWIITANGFMQNPVGYVVR
NGRAELNDFWALVTNPYAWNMFFHTVVGCYIVGAFFVMAISAYHLLRKNEVEFFKKSFKFGLMLGLFAATITPFMGHQSG
VSAAKYQPAKGAAMEAVWETGKGQGFSIVQIPDVKNEKNFEFLTIPKLGSFFYTNSFDGEIVGLKDIPKEDRPNVNLVYY
SFRLMVALGMFFMALTWYGFYLNRKGKLENSKRYLKITIWSVLLPYIAINAGWIVAEVGRQPWTVYKLMRTAESVSPISV
PQIWFSLISLILFYTLLLIADVYLMLKFAKKGPAALEEPATKGGVAHVS
>Mature_448_residues
SDVLLLSRFQFAITIFYHFLFVPLTIGLVILVACMETQYARTLNPTYRKMANFWGKLFTINFVMGIITGITMEFQFGTNW
SEYSKYMGDIFGSPLAIEALVAFFLESTFMGIWLFGKDKISPKFRAFCMWMVALGTNISALWIITANGFMQNPVGYVVRN
GRAELNDFWALVTNPYAWNMFFHTVVGCYIVGAFFVMAISAYHLLRKNEVEFFKKSFKFGLMLGLFAATITPFMGHQSGV
SAAKYQPAKGAAMEAVWETGKGQGFSIVQIPDVKNEKNFEFLTIPKLGSFFYTNSFDGEIVGLKDIPKEDRPNVNLVYYS
FRLMVALGMFFMALTWYGFYLNRKGKLENSKRYLKITIWSVLLPYIAINAGWIVAEVGRQPWTVYKLMRTAESVSPISVP
QIWFSLISLILFYTLLLIADVYLMLKFAKKGPAALEEPATKGGVAHVS

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=506, Percent_Identity=38.3399209486166, Blast_Score=330, Evalue=9e-92,
Organism=Escherichia coli, GI1787212, Length=328, Percent_Identity=47.8658536585366, Blast_Score=291, Evalue=5e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 50967; Mature: 50836

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDVLLLSRFQFAITIFYHFLFVPLTIGLVILVACMETQYARTLNPTYRKMANFWGKLFT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
INFVMGIITGITMEFQFGTNWSEYSKYMGDIFGSPLAIEALVAFFLESTFMGIWLFGKDK
HHHHHHHHHCCEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEEECCCC
ISPKFRAFCMWMVALGTNISALWIITANGFMQNPVGYVVRNGRAELNDFWALVTNPYAWN
CCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHEEECCCCCHHHHHHHHCCCCHHH
MFFHTVVGCYIVGAFFVMAISAYHLLRKNEVEFFKKSFKFGLMLGLFAATITPFMGHQSG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VSAAKYQPAKGAAMEAVWETGKGQGFSIVQIPDVKNEKNFEFLTIPKLGSFFYTNSFDGE
CCHHCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEECCCCCCEEEECCCCCC
IVGLKDIPKEDRPNVNLVYYSFRLMVALGMFFMALTWYGFYLNRKGKLENSKRYLKITIW
EEECCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHH
SVLLPYIAINAGWIVAEVGRQPWTVYKLMRTAESVSPISVPQIWFSLISLILFYTLLLIA
HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
DVYLMLKFAKKGPAALEEPATKGGVAHVS
HHHHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SDVLLLSRFQFAITIFYHFLFVPLTIGLVILVACMETQYARTLNPTYRKMANFWGKLFT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
INFVMGIITGITMEFQFGTNWSEYSKYMGDIFGSPLAIEALVAFFLESTFMGIWLFGKDK
HHHHHHHHHCCEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEEECCCC
ISPKFRAFCMWMVALGTNISALWIITANGFMQNPVGYVVRNGRAELNDFWALVTNPYAWN
CCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHEEECCCCCHHHHHHHHCCCCHHH
MFFHTVVGCYIVGAFFVMAISAYHLLRKNEVEFFKKSFKFGLMLGLFAATITPFMGHQSG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VSAAKYQPAKGAAMEAVWETGKGQGFSIVQIPDVKNEKNFEFLTIPKLGSFFYTNSFDGE
CCHHCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEECCCCCCEEEECCCCCC
IVGLKDIPKEDRPNVNLVYYSFRLMVALGMFFMALTWYGFYLNRKGKLENSKRYLKITIW
EEECCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHH
SVLLPYIAINAGWIVAEVGRQPWTVYKLMRTAESVSPISVPQIWFSLISLILFYTLLLIA
HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
DVYLMLKFAKKGPAALEEPATKGGVAHVS
HHHHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]