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The map label for this gene is sdpR [H]

Identifier: 52140667

GI number: 52140667

Start: 4671671

End: 4671943

Strand: Reverse

Name: sdpR [H]

Synonym: BCZK4586

Alternate gene names: 52140667

Gene position: 4671943-4671671 (Counterclockwise)

Preceding gene: 52140660

Following gene: 52140669

Centisome position: 88.13

GC content: 34.43

Gene sequence:

>273_bases
TTGAATCAAGCATTCAAAGCATTAGCAGATCCAACAAGGCGAAAAATTTTAGATTTATTAAAAGAAGGTGATCTAACAGC
TGGTGAGATTGCTGAGCATTTTAATATGACAAAACCAAGTATTTCACACCACTTAAACGCACTTAAAAATGCTGAACTTA
TTCAAGATGAAAAGAAAGGCCAATTCGTTGTGTACTCTTTAAACACAACTGTCTTTCAAGATTTATTAACTTGGGTGTTT
ACGTTTACGAATAAGGGGGAAGAGGGGAAATGA

Upstream 100 bases:

>100_bases
AAAAGTAAAAAGTGCGCTGGATACAATTGACAAATAACAGTAATCGGTTTAATATTTAGATAAATATCTAAATGTCTAAT
TATCGAAAGGAAGAAAGACA

Downstream 100 bases:

>100_bases
GGAAGCATCTTTTTGCAATAATATTAATTGTTACAACTTGTTTAGCTTGGGCGTTTGCTTGGCCGCATTTGCCGGATACA
ATTGCAACGCATTGGAGCGG

Product: ArsR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 90; Mature: 90

Protein sequence:

>90_residues
MNQAFKALADPTRRKILDLLKEGDLTAGEIAEHFNMTKPSISHHLNALKNAELIQDEKKGQFVVYSLNTTVFQDLLTWVF
TFTNKGEEGK

Sequences:

>Translated_90_residues
MNQAFKALADPTRRKILDLLKEGDLTAGEIAEHFNMTKPSISHHLNALKNAELIQDEKKGQFVVYSLNTTVFQDLLTWVF
TFTNKGEEGK
>Mature_90_residues
MNQAFKALADPTRRKILDLLKEGDLTAGEIAEHFNMTKPSISHHLNALKNAELIQDEKKGQFVVYSLNTTVFQDLLTWVF
TFTNKGEEGK

Specific function: Represses the transcription of the sdpIR operon and of several other operons that probably contribute to delaying commitment to sporulation [H]

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 10208; Mature: 10208

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQAFKALADPTRRKILDLLKEGDLTAGEIAEHFNMTKPSISHHLNALKNAELIQDEKKG
CCHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
QFVVYSLNTTVFQDLLTWVFTFTNKGEEGK
CEEEEECCHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNQAFKALADPTRRKILDLLKEGDLTAGEIAEHFNMTKPSISHHLNALKNAELIQDEKKG
CCHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
QFVVYSLNTTVFQDLLTWVFTFTNKGEEGK
CEEEEECCHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]