Click here to switch to the map view.

The map label for this gene is tipA [H]

Identifier: 52140564

GI number: 52140564

Start: 4791057

End: 4791788

Strand: Reverse

Name: tipA [H]

Synonym: BCZK4694

Alternate gene names: 52140564

Gene position: 4791788-4791057 (Counterclockwise)

Preceding gene: 52140561

Following gene: 52140566

Centisome position: 90.4

GC content: 38.66

Gene sequence:

>732_bases
ATGGCAATGAAGGTAAAAGAAGTAGCTAATTTAGTTGGAATTAGTGTGCGCACACTGCATCATTACGATGAAATTGGGTT
GTTAATTCCAGACGAGACGACAGAGTCTGGATATCGTCTGTATTCCAATGAAAATTTAGAGACGTTGCAGCAAATTTTAT
TTTTTAAAGAACTAGGCTTCCCTTTGAAGAAAATTAAAGAAATTATCATGAGTCCATCATTTGACCGGGAAGAAGCATTG
CAGCTTCATAAGAAAATGCTTCTTGAAAAGCGGGCTAGGTTAGATAAAGTGATTGCGACGATTGATAAAACAATTCAGCA
TACAAAAGGAGAGATTGAAATGACGAATAAAGAGAAATTTGAAGGCTTCGATTTCAGCCATAATCCGTACGAAGAAGAAG
CGCGTGAAAGATGGGGAGACGCAGCTGTAGATAAAGCGAATGAATATGCGAAAGGTATGTCTAAAGAAAACCAAGAAGAG
TTTAATACGATTTACAGAAACTTAGCGGCGCTTAGACACGGAGCACCAGATTCCAAAGAGGCGCAAGAAGCTATCAAAGT
ATGGTACGATTACTTGCAAAACTTCGGTGAATATTCATTAGATGCTTTTAAAGGACTCGGTCAAATGTACGTGGCGGATG
AGCGCTTTACGAAAAATATCGATAAGTTTGGCGAAGGTTTAGCGCAGTTTATGTGTGATGCGATGGAGATTTATGCGGAT
CGTAATAAATAA

Upstream 100 bases:

>100_bases
ATATCTATTATGCATGAAATATTTTATAAAGAAAATGAATTTACTTATTGACTCTAACGTTGCGTCATACTTTATCGTAT
GTATTAAGGGGGAGATACAC

Downstream 100 bases:

>100_bases
TAAAAAATAAAGAAGGTGGAGGTTTTCTCCGCCTTCTTTATTTTTTTATCATATCATTTAAAGTCTGATCCCCTGTATTG
TTCAAATGAGGATTTTTACT

Product: transcriptional activator

Products: NA

Alternate protein names: Multidrug transporter activation protein [H]

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MAMKVKEVANLVGISVRTLHHYDEIGLLIPDETTESGYRLYSNENLETLQQILFFKELGFPLKKIKEIIMSPSFDREEAL
QLHKKMLLEKRARLDKVIATIDKTIQHTKGEIEMTNKEKFEGFDFSHNPYEEEARERWGDAAVDKANEYAKGMSKENQEE
FNTIYRNLAALRHGAPDSKEAQEAIKVWYDYLQNFGEYSLDAFKGLGQMYVADERFTKNIDKFGEGLAQFMCDAMEIYAD
RNK

Sequences:

>Translated_243_residues
MAMKVKEVANLVGISVRTLHHYDEIGLLIPDETTESGYRLYSNENLETLQQILFFKELGFPLKKIKEIIMSPSFDREEAL
QLHKKMLLEKRARLDKVIATIDKTIQHTKGEIEMTNKEKFEGFDFSHNPYEEEARERWGDAAVDKANEYAKGMSKENQEE
FNTIYRNLAALRHGAPDSKEAQEAIKVWYDYLQNFGEYSLDAFKGLGQMYVADERFTKNIDKFGEGLAQFMCDAMEIYAD
RNK
>Mature_242_residues
AMKVKEVANLVGISVRTLHHYDEIGLLIPDETTESGYRLYSNENLETLQQILFFKELGFPLKKIKEIIMSPSFDREEALQ
LHKKMLLEKRARLDKVIATIDKTIQHTKGEIEMTNKEKFEGFDFSHNPYEEEARERWGDAAVDKANEYAKGMSKENQEEF
NTIYRNLAALRHGAPDSKEAQEAIKVWYDYLQNFGEYSLDAFKGLGQMYVADERFTKNIDKFGEGLAQFMCDAMEIYADR
NK

Specific function: Global transcriptional regulator that activates transcription of bmr and blt by binding directly to their promoter. Stimulates also the expression of the mta gene itself, ydfK and ymfE [H]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR012925
- InterPro:   IPR015358 [H]

Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind; PF07739 TipAS [H]

EC number: NA

Molecular weight: Translated: 28232; Mature: 28101

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMKVKEVANLVGISVRTLHHYDEIGLLIPDETTESGYRLYSNENLETLQQILFFKELGF
CCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCEEECCCCCHHHHHHHHHHHHHCC
PLKKIKEIIMSPSFDREEALQLHKKMLLEKRARLDKVIATIDKTIQHTKGEIEMTNKEKF
CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHC
EGFDFSHNPYEEEARERWGDAAVDKANEYAKGMSKENQEEFNTIYRNLAALRHGAPDSKE
CCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHH
AQEAIKVWYDYLQNFGEYSLDAFKGLGQMYVADERFTKNIDKFGEGLAQFMCDAMEIYAD
HHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RNK
CCC
>Mature Secondary Structure 
AMKVKEVANLVGISVRTLHHYDEIGLLIPDETTESGYRLYSNENLETLQQILFFKELGF
CCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCEEECCCCCHHHHHHHHHHHHHCC
PLKKIKEIIMSPSFDREEALQLHKKMLLEKRARLDKVIATIDKTIQHTKGEIEMTNKEKF
CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHC
EGFDFSHNPYEEEARERWGDAAVDKANEYAKGMSKENQEEFNTIYRNLAALRHGAPDSKE
CCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHH
AQEAIKVWYDYLQNFGEYSLDAFKGLGQMYVADERFTKNIDKFGEGLAQFMCDAMEIYAD
HHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RNK
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9150240; 9384377 [H]