Click here to switch to the map view.

The map label for this gene is yvdD [H]

Identifier: 52140476

GI number: 52140476

Start: 4871478

End: 4872056

Strand: Reverse

Name: yvdD [H]

Synonym: BCZK4781

Alternate gene names: 52140476

Gene position: 4872056-4871478 (Counterclockwise)

Preceding gene: 52140474

Following gene: 52140479

Centisome position: 91.91

GC content: 40.93

Gene sequence:

>579_bases
ATGAGAAAGATTTGTGTGTTTGCAGGTTCAAATTTAGGGGAGAGACCAGAGTTCAAAGAGCAGGCAATAGCGTTAGGGAA
AATGTTTGTTGAGAATGAGTACGAGCTTGTATATGGTGGTTCTTGCGTTGGATTAATGGGAGAAGTAGCAAACGAAGTTC
TTCGTTTAGGCGGGCGTGTAACAGGTGTTATGCCGCGCGGTCTATTTCTAGGAGAAATCGTTCATACAGGGTTAACAGAA
TTAATTGAAGTAGAAACGATGCATGAACGTAAAGCGAAAATGGCAGAGCTTGCGGATGCTTTCATTGCACTGCCAGGCGG
ATATGGAACGTTTGAAGAGCTATTTGAAGTAGTATGTTGGTCACAAATTGGTATACATAATAAGCCAGTTGGTTTATTGA
ACATAAAAGATTTTTACGGACCAATTCTGCAAATGGTTGAACGTGCAGCAGAAGAAGGATTCATGAATCCATCGAATAAA
GAGTTAATCGTTGCCGCTGAAACGGCAGATGCACTCATTCATAAGATACAAAATTACGAGCGTCCTGTTTTAGGAACGAA
GTGGAAGCAACTATCATAA

Upstream 100 bases:

>100_bases
CCATCTTTGAAATGCGACGATATCCATTTCTTTCTCATCCCCTCAATATGTTGTACAATATTCATTATATCATAACAATA
TATAGTTTTGGGGTGTAAGG

Downstream 100 bases:

>100_bases
TACAATCTTATAGAGATTTTTGGAAACACATGTCATTTTATCTTGAAAAGGCATGTGTTTTTAATTTGGTTAAATATGTT
AATGTTAAGGTATAATGTTT

Product: lysine decarboxylase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MRKICVFAGSNLGERPEFKEQAIALGKMFVENEYELVYGGSCVGLMGEVANEVLRLGGRVTGVMPRGLFLGEIVHTGLTE
LIEVETMHERKAKMAELADAFIALPGGYGTFEELFEVVCWSQIGIHNKPVGLLNIKDFYGPILQMVERAAEEGFMNPSNK
ELIVAAETADALIHKIQNYERPVLGTKWKQLS

Sequences:

>Translated_192_residues
MRKICVFAGSNLGERPEFKEQAIALGKMFVENEYELVYGGSCVGLMGEVANEVLRLGGRVTGVMPRGLFLGEIVHTGLTE
LIEVETMHERKAKMAELADAFIALPGGYGTFEELFEVVCWSQIGIHNKPVGLLNIKDFYGPILQMVERAAEEGFMNPSNK
ELIVAAETADALIHKIQNYERPVLGTKWKQLS
>Mature_192_residues
MRKICVFAGSNLGERPEFKEQAIALGKMFVENEYELVYGGSCVGLMGEVANEVLRLGGRVTGVMPRGLFLGEIVHTGLTE
LIEVETMHERKAKMAELADAFIALPGGYGTFEELFEVVCWSQIGIHNKPVGLLNIKDFYGPILQMVERAAEEGFMNPSNK
ELIVAAETADALIHKIQNYERPVLGTKWKQLS

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LOG family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6322406, Length=207, Percent_Identity=38.1642512077295, Blast_Score=147, Evalue=1e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005269 [H]

Pfam domain/function: PF03641 Lysine_decarbox [H]

EC number: NA

Molecular weight: Translated: 21261; Mature: 21261

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: PS00659 GLYCOSYL_HYDROL_F5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKICVFAGSNLGERPEFKEQAIALGKMFVENEYELVYGGSCVGLMGEVANEVLRLGGRV
CCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCE
TGVMPRGLFLGEIVHTGLTELIEVETMHERKAKMAELADAFIALPGGYGTFEELFEVVCW
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
SQIGIHNKPVGLLNIKDFYGPILQMVERAAEEGFMNPSNKELIVAAETADALIHKIQNYE
HHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHCC
RPVLGTKWKQLS
CCCCCCCCCCCC
>Mature Secondary Structure
MRKICVFAGSNLGERPEFKEQAIALGKMFVENEYELVYGGSCVGLMGEVANEVLRLGGRV
CCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCE
TGVMPRGLFLGEIVHTGLTELIEVETMHERKAKMAELADAFIALPGGYGTFEELFEVVCW
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
SQIGIHNKPVGLLNIKDFYGPILQMVERAAEEGFMNPSNKELIVAAETADALIHKIQNYE
HHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHCC
RPVLGTKWKQLS
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]