| Definition | Bacillus cereus E33L, complete genome. |
|---|---|
| Accession | NC_006274 |
| Length | 5,300,915 |
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The map label for this gene is lytF [H]
Identifier: 52140330
GI number: 52140330
Start: 5022028
End: 5023767
Strand: Direct
Name: lytF [H]
Synonym: BCZK4930
Alternate gene names: 52140330
Gene position: 5022028-5023767 (Clockwise)
Preceding gene: 52140331
Following gene: 52140329
Centisome position: 94.74
GC content: 39.94
Gene sequence:
>1740_bases ATGAAAAAATACCTTGCCGGTCTTGCGGCAGTGTCTGTAGCAGGAGGAGCAGCACCTACACTTGATAGTGTTCAAGCTGC CCCTGAACAAAATACACAAAAAGCTGCTACAACTGTCCAAGCTTCTGCATCAAACAGCTCATCTTATACGGTAAACGCTA GCGTATTACATGTTCGTGCAGGATCAAGTACTTCTCACGACATCATCTCGCGCGTTTATAACGGTCAATCACTAAACGTG ATTGGCGAAGAAAATGGTTGGTACAAAATTAACATTAATGGACAAACAGGCTTTGTTAGTGGCGAATTTGTATCAAAAAA TGGTGCGAGCAATTCAAATGTAAGTACAACAGGTGGAAAAAATAAAGTTACTGCTGATGTATTACGTGTACGTACCGCTC CTAACACTTCTAGTTCTGTTTCAGGACGTGTATATGAAGGACAAACATTAAACGTAATTGGTCAAGAAAATGGTTGGGTA AAAATCAATCATAATGGACAAGTTGGCTATGTAAGTGGCGAATTCGTATCTGGTGTTTCTTCTAATGCAGGTTCTTCAAA CAGCAATACGAATAATAACAACCAAGAATCTGTAAAACCAGCAAGCGGAAACTATACAGTAAATGTATCTTCCCTTCGTG TTCGTACAGGCCCTAGCACTTCTCACACAACTGTAGGTTCTGTTACAAAAGGACAAGTAGTACAAGTTGTTGGCGAAGTG CAAGATTGGTTCAAAATCAATTATGCAGGTCAAACGGCTTACGTAAGTAAAGACTACGTAACAAAAGGCGGTTCTAGCGA TAACGTTACACAAGGAAACAACCAAAATAATAATCAAAACAATAATGTAACTGTTCAAACTGGTGGTACTTACGTTGTTA ACGCAACATCTCTACGCGTTCGTACAGGTCCTGCTACTTACCATAGCGTAATTGGTGGCGTATTAAATGGTACGACATTA AACGTAATTGGCTCTGAAGGTAGCTGGTTTAAAGTTAACTATCAAGGAAAAACAGGCTACGTTAGTAGCGAATTCATGAA ATTCGTTAAAGGTGGCACTACTACTCCTGAGCAACCAAAACAACCTGAACAACCTAATCAAGGTGCAATTGGTGACTACT ACATTAATGCTTCTGCCTTAAATGTACGTAGTGGTGAAGGTACAAATTATAGAATCATAGGCGCACTTCCACAAGGACAG AAGGTTCAAGTAATCTCTGAAAACTCTGGATGGAGCAAAATTAACTACAACGGTCAAACTGGTTATATCGGAACACGTTA CCTTTCTAAAACACCAGTTGGCGGCGCAGTAGATAATAAACCTAACAACAATCAAAATAACAATCAAAACAATAACAACA ATACAGGTAATAATAGCGGCAACAGTTCTTCTATACTTGCATATGCAAAAGGAATGCAAGGCGTACCATACGTTTGGGGC GGAACTTCTGCTAACGGTGTGGACTGCAGTGGCTACATCTACCACGTATTTAAGAAATTTGGTCATAACATTAGCCGTCA AAGTGTTGCAGGATATTGGGGTAGCCTACCACAAACTTCAAATCCACAACCAGGTGACTTAATTTATTTCCAAAACACTT ATAAATCGGGTCCTTCTCACATGGGTATTTACCTTGGGGGCGGATCATTTATCCAAGCTGGAGATAAAGGTGTAGCAATC GCTTCGTTAAGTAACTCTTATTGGAAGAGCCATTTCTTAGGATACACGAAAGCACCTTAA
Upstream 100 bases:
>100_bases CCCGCATAAGTCTTGACAGTAATCGACATGCTCTTTAGAATTTTTAACAGTTGGTAAATATTTCTTCACTATATTACAGA CAGAAAGGAATCGACAAATT
Downstream 100 bases:
>100_bases TTAATAGTTTCAAAGCCTTCTAGATTACTAGAAGGCTTTTTTTAATGTGTGTCACCTACCCCCAAAAAAATAATGTATCT ATTTTCCTATTTCATACACT
Product: N-acetylmuramoyl-L-alanine amidase; enterotoxin
Products: NA
Alternate protein names: Cell wall-associated polypeptide CWBP49; Gamma-D-glutamate-meso-diaminopimelate muropeptidase lytF [H]
Number of amino acids: Translated: 579; Mature: 579
Protein sequence:
>579_residues MKKYLAGLAAVSVAGGAAPTLDSVQAAPEQNTQKAATTVQASASNSSSYTVNASVLHVRAGSSTSHDIISRVYNGQSLNV IGEENGWYKININGQTGFVSGEFVSKNGASNSNVSTTGGKNKVTADVLRVRTAPNTSSSVSGRVYEGQTLNVIGQENGWV KINHNGQVGYVSGEFVSGVSSNAGSSNSNTNNNNQESVKPASGNYTVNVSSLRVRTGPSTSHTTVGSVTKGQVVQVVGEV QDWFKINYAGQTAYVSKDYVTKGGSSDNVTQGNNQNNNQNNNVTVQTGGTYVVNATSLRVRTGPATYHSVIGGVLNGTTL NVIGSEGSWFKVNYQGKTGYVSSEFMKFVKGGTTTPEQPKQPEQPNQGAIGDYYINASALNVRSGEGTNYRIIGALPQGQ KVQVISENSGWSKINYNGQTGYIGTRYLSKTPVGGAVDNKPNNNQNNNQNNNNNTGNNSGNSSSILAYAKGMQGVPYVWG GTSANGVDCSGYIYHVFKKFGHNISRQSVAGYWGSLPQTSNPQPGDLIYFQNTYKSGPSHMGIYLGGGSFIQAGDKGVAI ASLSNSYWKSHFLGYTKAP
Sequences:
>Translated_579_residues MKKYLAGLAAVSVAGGAAPTLDSVQAAPEQNTQKAATTVQASASNSSSYTVNASVLHVRAGSSTSHDIISRVYNGQSLNV IGEENGWYKININGQTGFVSGEFVSKNGASNSNVSTTGGKNKVTADVLRVRTAPNTSSSVSGRVYEGQTLNVIGQENGWV KINHNGQVGYVSGEFVSGVSSNAGSSNSNTNNNNQESVKPASGNYTVNVSSLRVRTGPSTSHTTVGSVTKGQVVQVVGEV QDWFKINYAGQTAYVSKDYVTKGGSSDNVTQGNNQNNNQNNNVTVQTGGTYVVNATSLRVRTGPATYHSVIGGVLNGTTL NVIGSEGSWFKVNYQGKTGYVSSEFMKFVKGGTTTPEQPKQPEQPNQGAIGDYYINASALNVRSGEGTNYRIIGALPQGQ KVQVISENSGWSKINYNGQTGYIGTRYLSKTPVGGAVDNKPNNNQNNNQNNNNNTGNNSGNSSSILAYAKGMQGVPYVWG GTSANGVDCSGYIYHVFKKFGHNISRQSVAGYWGSLPQTSNPQPGDLIYFQNTYKSGPSHMGIYLGGGSFIQAGDKGVAI ASLSNSYWKSHFLGYTKAP >Mature_579_residues MKKYLAGLAAVSVAGGAAPTLDSVQAAPEQNTQKAATTVQASASNSSSYTVNASVLHVRAGSSTSHDIISRVYNGQSLNV IGEENGWYKININGQTGFVSGEFVSKNGASNSNVSTTGGKNKVTADVLRVRTAPNTSSSVSGRVYEGQTLNVIGQENGWV KINHNGQVGYVSGEFVSGVSSNAGSSNSNTNNNNQESVKPASGNYTVNVSSLRVRTGPSTSHTTVGSVTKGQVVQVVGEV QDWFKINYAGQTAYVSKDYVTKGGSSDNVTQGNNQNNNQNNNVTVQTGGTYVVNATSLRVRTGPATYHSVIGGVLNGTTL NVIGSEGSWFKVNYQGKTGYVSSEFMKFVKGGTTTPEQPKQPEQPNQGAIGDYYINASALNVRSGEGTNYRIIGALPQGQ KVQVISENSGWSKINYNGQTGYIGTRYLSKTPVGGAVDNKPNNNQNNNQNNNNNTGNNSGNSSSILAYAKGMQGVPYVWG GTSANGVDCSGYIYHVFKKFGHNISRQSVAGYWGSLPQTSNPQPGDLIYFQNTYKSGPSHMGIYLGGGSFIQAGDKGVAI ASLSNSYWKSHFLGYTKAP
Specific function: Cleaves gamma-D-glutamate-meso-diaminopimelate bonds. Cell wall hydrolase involved in cell autolysis [H]
COG id: COG0791
COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)
Gene ontology:
Cell location: Secreted, cell wall. Note=LysM repeats are thought to be involved in peptidoglycan binding [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 5 LysM repeats [H]
Homologues:
Organism=Escherichia coli, GI1786421, Length=145, Percent_Identity=29.6551724137931, Blast_Score=76, Evalue=7e-15, Organism=Escherichia coli, GI1787944, Length=118, Percent_Identity=37.2881355932203, Blast_Score=75, Evalue=2e-14, Organism=Escherichia coli, GI1788501, Length=128, Percent_Identity=32.03125, Blast_Score=67, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000064 - InterPro: IPR018392 - InterPro: IPR002482 [H]
Pfam domain/function: PF01476 LysM; PF00877 NLPC_P60 [H]
EC number: 3.5.1.28
Molecular weight: Translated: 60992; Mature: 60992
Theoretical pI: Translated: 9.87; Mature: 9.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKYLAGLAAVSVAGGAAPTLDSVQAAPEQNTQKAATTVQASASNSSSYTVNASVLHVRA CHHHHHHHHHEEECCCCCCCHHHHHCCCCCCCHHHHEEEEECCCCCCCEEEEEEEEEEEC GSSTSHDIISRVYNGQSLNVIGEENGWYKININGQTGFVSGEFVSKNGASNSNVSTTGGK CCCCHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCEEECEEEECCCCCCCCEECCCCC NKVTADVLRVRTAPNTSSSVSGRVYEGQTLNVIGQENGWVKINHNGQVGYVSGEFVSGVS CCEEEEEEEEECCCCCCCCCCCEEECCCEEEEEECCCCEEEEECCCCEEEECCHHHCCCC SNAGSSNSNTNNNNQESVKPASGNYTVNVSSLRVRTGPSTSHTTVGSVTKGQVVQVVGEV CCCCCCCCCCCCCCHHHCCCCCCCEEEEEEEEEEECCCCCCCEEECCCCCCHHHHHHHHH QDWFKINYAGQTAYVSKDYVTKGGSSDNVTQGNNQNNNQNNNVTVQTGGTYVVNATSLRV CCEEEEEECCCEEEEECCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEEEEE RTGPATYHSVIGGVLNGTTLNVIGSEGSWFKVNYQGKTGYVSSEFMKFVKGGTTTPEQPK EECCCHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCC QPEQPNQGAIGDYYINASALNVRSGEGTNYRIIGALPQGQKVQVISENSGWSKINYNGQT CCCCCCCCCCEEEEEEEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCC GYIGTRYLSKTPVGGAVDNKPNNNQNNNQNNNNNTGNNSGNSSSILAYAKGMQGVPYVWG CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEC GTSANGVDCSGYIYHVFKKFGHNISRQSVAGYWGSLPQTSNPQPGDLIYFQNTYKSGPSH CCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCE MGIYLGGGSFIQAGDKGVAIASLSNSYWKSHFLGYTKAP EEEEECCCCEEECCCCCEEEEECCCHHHHHHHCEECCCC >Mature Secondary Structure MKKYLAGLAAVSVAGGAAPTLDSVQAAPEQNTQKAATTVQASASNSSSYTVNASVLHVRA CHHHHHHHHHEEECCCCCCCHHHHHCCCCCCCHHHHEEEEECCCCCCCEEEEEEEEEEEC GSSTSHDIISRVYNGQSLNVIGEENGWYKININGQTGFVSGEFVSKNGASNSNVSTTGGK CCCCHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCEEECEEEECCCCCCCCEECCCCC NKVTADVLRVRTAPNTSSSVSGRVYEGQTLNVIGQENGWVKINHNGQVGYVSGEFVSGVS CCEEEEEEEEECCCCCCCCCCCEEECCCEEEEEECCCCEEEEECCCCEEEECCHHHCCCC SNAGSSNSNTNNNNQESVKPASGNYTVNVSSLRVRTGPSTSHTTVGSVTKGQVVQVVGEV CCCCCCCCCCCCCCHHHCCCCCCCEEEEEEEEEEECCCCCCCEEECCCCCCHHHHHHHHH QDWFKINYAGQTAYVSKDYVTKGGSSDNVTQGNNQNNNQNNNVTVQTGGTYVVNATSLRV CCEEEEEECCCEEEEECCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEEEEE RTGPATYHSVIGGVLNGTTLNVIGSEGSWFKVNYQGKTGYVSSEFMKFVKGGTTTPEQPK EECCCHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCC QPEQPNQGAIGDYYINASALNVRSGEGTNYRIIGALPQGQKVQVISENSGWSKINYNGQT CCCCCCCCCCEEEEEEEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCC GYIGTRYLSKTPVGGAVDNKPNNNQNNNQNNNNNTGNNSGNSSSILAYAKGMQGVPYVWG CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEC GTSANGVDCSGYIYHVFKKFGHNISRQSVAGYWGSLPQTSNPQPGDLIYFQNTYKSGPSH CCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCE MGIYLGGGSFIQAGDKGVAIASLSNSYWKSHFLGYTKAP EEEEECCCCEEECCCCCEEEEECCCHHHHHHHCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377; 10206711 [H]