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The map label for this gene is yocD [H]

Identifier: 52140199

GI number: 52140199

Start: 5174769

End: 5175755

Strand: Direct

Name: yocD [H]

Synonym: BCZK5063

Alternate gene names: 52140199

Gene position: 5174769-5175755 (Clockwise)

Preceding gene: 52140204

Following gene: 52140196

Centisome position: 97.62

GC content: 35.26

Gene sequence:

>987_bases
ATGCTACCAACAAAATTAAAAAAGGGTGATGAAATTAGGGTTATTTCACCATCCTGTAGTTTAAGTATTGTCTCAATTGA
AAACAGAAATTTTGCTATAAAAAGATTAACCAACCTTGGCTTTCACGTTACATTCTCAACACATGCTGAAGAAATAGATC
AATTCGCTTCCTCTTCTATTTCTTCACGCGTTCAAGACCTCCACGAAGCATTTAGAGATCCAAATGTAAAAGCCATTTTG
ACGACACTTGGCGGATACAACTCTAATGGTTTATTAAAATATCTCGATTACGATTTAATTCGTGAAAATCCGAAATTTTT
CTGTGGCTATTCGGATATTACTGCTTTAAATAATGCAATTTACACTAAAACAGGACTTGTTACATATTCGGGGCCCCATT
TCTCTTCATTTGGAATGGAGAAAGGGCTCGAGTATACAACCGATTACTTTTTACAATGCTTAACTTCTAATAAGCCTATT
GAAGTCCTGCCATCTGAAACATGGAGCGATGATTCTTGGTATATAGATCAAGAAAATCGAAAATTTATTAAAAATGAAGG
ATACGTTTCGATTCACGAAGGAGAAGCTACGGGAGATATTATCGGTGGTAATATGAGCACATTGAACTTACTGCAAGGTA
CACCATATATGCCAAATTTAAAGGATAAAATTTTATTTCTTGAAGAGGATAGTTTAACTGGAACATCTACTCTTAAAACT
TTTGATCGCTATTTACACTCTCTTATGCAGCAGCAAGATTTTGAATATGTAAAAGGCATCGTTATAGGAAAGATGCAAAA
AGGCGCAGAATGTACGATAGAAGACATTCAAGAAATGATTGCTTCAAAGCCTGAACTGGCACATATCCCTATCATTGCAA
ATGCAAGTTTCGGTCATACAACCCCGATTTTTACTTTCCCAATTGGCGGACGTGCAACAATCATTTCTAGTAAAGAAAAG
ACATCTATCACTATTTTAACGCACTAA

Upstream 100 bases:

>100_bases
AGGAAAACTCCATTTCAAAAAATAATTCACTTTCACTTTATTTCATATGCTAAAATATTTTTTAAGTCTAAATATTCTTT
CATTTAAAGAGGTGAAATAG

Downstream 100 bases:

>100_bases
AAAGGGAGCGAATGAGTCGCTCCTTTTATCGTTTTTCTATTTTTTCCAACGCTTTTTGCGGAATTGATTCTTTCGGGATT
TCAGCCCATCCTTTTCCTTG

Product: muramoyltetrapeptide carboxypeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MLPTKLKKGDEIRVISPSCSLSIVSIENRNFAIKRLTNLGFHVTFSTHAEEIDQFASSSISSRVQDLHEAFRDPNVKAIL
TTLGGYNSNGLLKYLDYDLIRENPKFFCGYSDITALNNAIYTKTGLVTYSGPHFSSFGMEKGLEYTTDYFLQCLTSNKPI
EVLPSETWSDDSWYIDQENRKFIKNEGYVSIHEGEATGDIIGGNMSTLNLLQGTPYMPNLKDKILFLEEDSLTGTSTLKT
FDRYLHSLMQQQDFEYVKGIVIGKMQKGAECTIEDIQEMIASKPELAHIPIIANASFGHTTPIFTFPIGGRATIISSKEK
TSITILTH

Sequences:

>Translated_328_residues
MLPTKLKKGDEIRVISPSCSLSIVSIENRNFAIKRLTNLGFHVTFSTHAEEIDQFASSSISSRVQDLHEAFRDPNVKAIL
TTLGGYNSNGLLKYLDYDLIRENPKFFCGYSDITALNNAIYTKTGLVTYSGPHFSSFGMEKGLEYTTDYFLQCLTSNKPI
EVLPSETWSDDSWYIDQENRKFIKNEGYVSIHEGEATGDIIGGNMSTLNLLQGTPYMPNLKDKILFLEEDSLTGTSTLKT
FDRYLHSLMQQQDFEYVKGIVIGKMQKGAECTIEDIQEMIASKPELAHIPIIANASFGHTTPIFTFPIGGRATIISSKEK
TSITILTH
>Mature_328_residues
MLPTKLKKGDEIRVISPSCSLSIVSIENRNFAIKRLTNLGFHVTFSTHAEEIDQFASSSISSRVQDLHEAFRDPNVKAIL
TTLGGYNSNGLLKYLDYDLIRENPKFFCGYSDITALNNAIYTKTGLVTYSGPHFSSFGMEKGLEYTTDYFLQCLTSNKPI
EVLPSETWSDDSWYIDQENRKFIKNEGYVSIHEGEATGDIIGGNMSTLNLLQGTPYMPNLKDKILFLEEDSLTGTSTLKT
FDRYLHSLMQQQDFEYVKGIVIGKMQKGAECTIEDIQEMIASKPELAHIPIIANASFGHTTPIFTFPIGGRATIISSKEK
TSITILTH

Specific function: L,D-carboxypeptidase [C]

COG id: COG1619

COG function: function code V; Uncharacterized proteins, homologs of microcin C7 resistance protein MccF

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S66 family [H]

Homologues:

Organism=Escherichia coli, GI1787441, Length=316, Percent_Identity=25.9493670886076, Blast_Score=94, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003507 [H]

Pfam domain/function: PF02016 Peptidase_S66 [H]

EC number: NA

Molecular weight: Translated: 36702; Mature: 36702

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPTKLKKGDEIRVISPSCSLSIVSIENRNFAIKRLTNLGFHVTFSTHAEEIDQFASSSI
CCCCCCCCCCEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCHHHHHHHHHHHH
SSRVQDLHEAFRDPNVKAILTTLGGYNSNGLLKYLDYDLIRENPKFFCGYSDITALNNAI
HHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEECCHHHHHCCCCEEECCHHHHHHCCEE
YTKTGLVTYSGPHFSSFGMEKGLEYTTDYFLQCLTSNKPIEVLPSETWSDDSWYIDQENR
EEECCEEEECCCCCCCCCHHCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEECCCC
KFIKNEGYVSIHEGEATGDIIGGNMSTLNLLQGTPYMPNLKDKILFLEEDSLTGTSTLKT
CEECCCCEEEEECCCCCCEEECCCCCEEHEECCCCCCCCCCCEEEEEECCCCCCHHHHHH
FDRYLHSLMQQQDFEYVKGIVIGKMQKGAECTIEDIQEMIASKPELAHIPIIANASFGHT
HHHHHHHHHHHCCHHHHHHEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCCC
TPIFTFPIGGRATIISSKEKTSITILTH
CCEEEEECCCEEEEEECCCCCEEEEEEC
>Mature Secondary Structure
MLPTKLKKGDEIRVISPSCSLSIVSIENRNFAIKRLTNLGFHVTFSTHAEEIDQFASSSI
CCCCCCCCCCEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCHHHHHHHHHHHH
SSRVQDLHEAFRDPNVKAILTTLGGYNSNGLLKYLDYDLIRENPKFFCGYSDITALNNAI
HHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEECCHHHHHCCCCEEECCHHHHHHCCEE
YTKTGLVTYSGPHFSSFGMEKGLEYTTDYFLQCLTSNKPIEVLPSETWSDDSWYIDQENR
EEECCEEEECCCCCCCCCHHCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEECCCC
KFIKNEGYVSIHEGEATGDIIGGNMSTLNLLQGTPYMPNLKDKILFLEEDSLTGTSTLKT
CEECCCCEEEEECCCCCCEEECCCCCEEHEECCCCCCCCCCCEEEEEECCCCCCHHHHHH
FDRYLHSLMQQQDFEYVKGIVIGKMQKGAECTIEDIQEMIASKPELAHIPIIANASFGHT
HHHHHHHHHHHCCHHHHHHEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCCC
TPIFTFPIGGRATIISSKEKTSITILTH
CCEEEEECCCEEEEEECCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]