| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
Click here to switch to the map view.
The map label for this gene is spoIIE [H]
Identifier: 51894335
GI number: 51894335
Start: 3411441
End: 3413750
Strand: Reverse
Name: spoIIE [H]
Synonym: STH3200
Alternate gene names: 51894335
Gene position: 3413750-3411441 (Counterclockwise)
Preceding gene: 51894336
Following gene: 51894334
Centisome position: 95.73
GC content: 73.64
Gene sequence:
>2310_bases GTGGCATTCTCCCGGTCGTCTGATCGTCCCGAGCCGTCCGGCCGGAGGTGGACGGGCCTTCAGGGGTGGCTGCAACGCCG CCTGTCGTGGGCGTGGCGCCCGCTTCTGTACGCCGGGATCGTGATCGCGTTCCTCATGGGCCGGGCACAGCCGGTCAGCC CCGCAGCGCCGTTCAGCATCGCCTTCTACACGGCGGTGCGGGCGGCGGGGTTCGGCGGGCTGGCGGCGCTTCCCGTGGCC CTGGCGCTGCTGGGCGGCGCCGCGCTGGTCCAGCCGCTCTCCGTGTTCGCCACCACGGCCGTGGCCATCGGCCTGGTCCA CACCCTGGGCGGGCTGACGCAGGTGAGCCCTCGGCACAGTCCGCTCATCGGCGCCCTGCTTGCCGCCGCGGTGGCGGCGG GCCAGGGAATCCTGCAGAACCCCGCAGTCGGCACGGTGCCGCTCGCGTTCTGGTCCAGCCTCACCGGCGTGCTCGCGCTC CTCTTCACCCTGGCCGTGTCCGACCTGAGGCAGGGCAGGTACCCGGAAGGCGCGCCGCTGGATCTGCCGGTCCCCGCCAT CATCCTGCTGGCATCCGCCCTCACCGGGTTGCAGGACCTGACCCTGTGGGGACGGCTTTCGCTGCACGGCGTCTTCGCGG GGCTGGCGGTGCTGCTCTGCGCCCACGCGGGCGGAATGGGCTGGGGCGCCGCCGCGGGGGCGGTGATCGGCATGTCGTCC TTCCTCACGGTGCTCGCACACCCGCCGGGCACCGGCATGTTCGGCCCGCCGACCCTTTCGGACAGCCAGGCGATGGCGTA CGTTGTCGCCGGTTTCCTGGGCGGCGCGTTCCGCGACCTCAGGAAGCCGGGGGTGGGCCTGGCGTACGCATTGGGATTTC TCTCGTACAGCATGGCGACGCAGGGACAGGGGGCCGTGCTCGAGGCCATGGCCCTGTCGGCCGGCACCGCCACGCTGCTG TTCTGGCTGCTGCCGTCGGCCTGGGCGGTGCGCCTGCCGCAGGCCCTGCGCAGCGAGCGCGCTGCTCCGCCTGAGCCGGA TGCCGGCGCACCCGTCGACGGCACCGTGCGCGAGGCCCGTGAACGGCTGCTGGCGGTGGCGCAGGCCCTGAGGGAGATTC AGCGCACCTACACGCAGGTGGCCGCCGTGGCATCCCCGCCGGCGCCTGTCCTGGAGCGCCGCCTGCGGTCACTGAAAGAG CAGGTCTGCCAGTCCTGCTCCCTCCGCGCACAGTGCTGGGAGCGGGACGCGGACGAGACCCGGCAGCTGATGGACGACTT GTGGCGACGGATCGATCTGGAGGGCCCGCTGCCGCTGTCCCCGCTGCCGGACCAGCTGGAGGCCCGCTGCATTCACCCCG CGCAGGTTGCGGTGACGCTCAACCACCTGTACGACCTGGAGCGGTCCGACCGCGCCCTGGCCCGACGGCTCGAGGAGGGC AGGGCTGTGGCGGGAGAGTACATCCACAGCGTCGCCCGCATGCTGGACCGCATGGCGGAGGACATTGCAGCGGGGGGCAG GCCCGGCCGCGCCATGCCGGCGGTGTTCACGGCGACGGCCGCGGTGGCCCGCATGCCGAAGCGGGGCGGCCACATCTCCG GCGATTCGGCGGTCACGGGGCCCCTCTCGGGCGGGCGGTTCCTGCTGGCGCTCAGCGATGGCATGGGCGTCGGCCGCGAG GCGGCGGTGCAGTCCGGCGAGTGCGTCCGCCTCCTGCAGCAGTTGCTGGATGCCGGGTTCAACGCCGAGGTGGCGGTGAA GACGGTCAATTCCGTGCTCCTCCTCCGAGGGCCCGGGGATACGTTCGCCACGCTGGACCTCGCAGTCCTCGACCTGGCCA CCGGTCAGGCCGAGTTCGTCAAGGTCGGGGCCGCACCCAGCTTCGTGCGCCGCGGCGGCGACGTGACGGTCGTGCGCGTT CCCGCGCCGCCGGCCGGCGCCGTCCCGGACGTGGAGGTGGAGCCGGAGCGGCGGGTGCTGGGCGACGGCGACCTCATCGT GATGGTCAGCGACGGCGTCCTGGAGGCCGCCCGCGATCAGGAGGATAAGGAGCGGTGGCTATTGGAGCAGCTGAGCCGGG AGCAGAGCGCGGACCCCGAGGAGGTGGCCGAGCGCGTGCTGGCCCGTGCCCTTGAACTGACGCCCGCGCCGGAGGACGAC CTCACCGTCGTGGTGGCCCGGATGGCCCTCGCGGACGGCGCGGCGGAAGCGGCGCCGCGGCCGAAGCCATCGGGCCAGTG GGTCCCCGCCATGACGGCTCCCCGCGGGGGCCCGGGCGGCAACGGGGGCAGGCGCGCACGCAGGCGCTGA
Upstream 100 bases:
>100_bases TGGATGGAAATCGCAGGCGGCCCTTACAAAATTCGACAGCTTTCGGCAAGGCCGTTGGGTTACACTGGATGCTGCAACAT CGCCTGCAGAGGGTGATCGC
Downstream 100 bases:
>100_bases CGGACGGAAAGCTGCACGGAAACCGGAAGGGAATCCCCGGCCGGTGTCGAAACGGGAATCGGCACCTGGGCCGGGGATTG GCGTGGAGGGGGGGTGACCG
Product: stage II sporulation protein E
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 769; Mature: 768
Protein sequence:
>769_residues MAFSRSSDRPEPSGRRWTGLQGWLQRRLSWAWRPLLYAGIVIAFLMGRAQPVSPAAPFSIAFYTAVRAAGFGGLAALPVA LALLGGAALVQPLSVFATTAVAIGLVHTLGGLTQVSPRHSPLIGALLAAAVAAGQGILQNPAVGTVPLAFWSSLTGVLAL LFTLAVSDLRQGRYPEGAPLDLPVPAIILLASALTGLQDLTLWGRLSLHGVFAGLAVLLCAHAGGMGWGAAAGAVIGMSS FLTVLAHPPGTGMFGPPTLSDSQAMAYVVAGFLGGAFRDLRKPGVGLAYALGFLSYSMATQGQGAVLEAMALSAGTATLL FWLLPSAWAVRLPQALRSERAAPPEPDAGAPVDGTVREARERLLAVAQALREIQRTYTQVAAVASPPAPVLERRLRSLKE QVCQSCSLRAQCWERDADETRQLMDDLWRRIDLEGPLPLSPLPDQLEARCIHPAQVAVTLNHLYDLERSDRALARRLEEG RAVAGEYIHSVARMLDRMAEDIAAGGRPGRAMPAVFTATAAVARMPKRGGHISGDSAVTGPLSGGRFLLALSDGMGVGRE AAVQSGECVRLLQQLLDAGFNAEVAVKTVNSVLLLRGPGDTFATLDLAVLDLATGQAEFVKVGAAPSFVRRGGDVTVVRV PAPPAGAVPDVEVEPERRVLGDGDLIVMVSDGVLEAARDQEDKERWLLEQLSREQSADPEEVAERVLARALELTPAPEDD LTVVVARMALADGAAEAAPRPKPSGQWVPAMTAPRGGPGGNGGRRARRR
Sequences:
>Translated_769_residues MAFSRSSDRPEPSGRRWTGLQGWLQRRLSWAWRPLLYAGIVIAFLMGRAQPVSPAAPFSIAFYTAVRAAGFGGLAALPVA LALLGGAALVQPLSVFATTAVAIGLVHTLGGLTQVSPRHSPLIGALLAAAVAAGQGILQNPAVGTVPLAFWSSLTGVLAL LFTLAVSDLRQGRYPEGAPLDLPVPAIILLASALTGLQDLTLWGRLSLHGVFAGLAVLLCAHAGGMGWGAAAGAVIGMSS FLTVLAHPPGTGMFGPPTLSDSQAMAYVVAGFLGGAFRDLRKPGVGLAYALGFLSYSMATQGQGAVLEAMALSAGTATLL FWLLPSAWAVRLPQALRSERAAPPEPDAGAPVDGTVREARERLLAVAQALREIQRTYTQVAAVASPPAPVLERRLRSLKE QVCQSCSLRAQCWERDADETRQLMDDLWRRIDLEGPLPLSPLPDQLEARCIHPAQVAVTLNHLYDLERSDRALARRLEEG RAVAGEYIHSVARMLDRMAEDIAAGGRPGRAMPAVFTATAAVARMPKRGGHISGDSAVTGPLSGGRFLLALSDGMGVGRE AAVQSGECVRLLQQLLDAGFNAEVAVKTVNSVLLLRGPGDTFATLDLAVLDLATGQAEFVKVGAAPSFVRRGGDVTVVRV PAPPAGAVPDVEVEPERRVLGDGDLIVMVSDGVLEAARDQEDKERWLLEQLSREQSADPEEVAERVLARALELTPAPEDD LTVVVARMALADGAAEAAPRPKPSGQWVPAMTAPRGGPGGNGGRRARRR >Mature_768_residues AFSRSSDRPEPSGRRWTGLQGWLQRRLSWAWRPLLYAGIVIAFLMGRAQPVSPAAPFSIAFYTAVRAAGFGGLAALPVAL ALLGGAALVQPLSVFATTAVAIGLVHTLGGLTQVSPRHSPLIGALLAAAVAAGQGILQNPAVGTVPLAFWSSLTGVLALL FTLAVSDLRQGRYPEGAPLDLPVPAIILLASALTGLQDLTLWGRLSLHGVFAGLAVLLCAHAGGMGWGAAAGAVIGMSSF LTVLAHPPGTGMFGPPTLSDSQAMAYVVAGFLGGAFRDLRKPGVGLAYALGFLSYSMATQGQGAVLEAMALSAGTATLLF WLLPSAWAVRLPQALRSERAAPPEPDAGAPVDGTVREARERLLAVAQALREIQRTYTQVAAVASPPAPVLERRLRSLKEQ VCQSCSLRAQCWERDADETRQLMDDLWRRIDLEGPLPLSPLPDQLEARCIHPAQVAVTLNHLYDLERSDRALARRLEEGR AVAGEYIHSVARMLDRMAEDIAAGGRPGRAMPAVFTATAAVARMPKRGGHISGDSAVTGPLSGGRFLLALSDGMGVGREA AVQSGECVRLLQQLLDAGFNAEVAVKTVNSVLLLRGPGDTFATLDLAVLDLATGQAEFVKVGAAPSFVRRGGDVTVVRVP APPAGAVPDVEVEPERRVLGDGDLIVMVSDGVLEAARDQEDKERWLLEQLSREQSADPEEVAERVLARALELTPAPEDDL TVVVARMALADGAAEAAPRPKPSGQWVPAMTAPRGGPGGNGGRRARRR
Specific function: Normally needed for pro-sigma E processing during sporulation but can be bypassed in vegetative cells. Activates spoIIAA by dephosphorylation [H]
COG id: COG2208
COG function: function code TK; Serine phosphatase RsbU, regulator of sigma subunit
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein. Note=Polar septum (By similarity) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PP2C-like domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001932 - InterPro: IPR014221 - InterPro: IPR010822 [H]
Pfam domain/function: PF07228 SpoIIE [H]
EC number: =3.1.3.16 [H]
Molecular weight: Translated: 80761; Mature: 80630
Theoretical pI: Translated: 7.56; Mature: 7.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFSRSSDRPEPSGRRWTGLQGWLQRRLSWAWRPLLYAGIVIAFLMGRAQPVSPAAPFSI CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH AFYTAVRAAGFGGLAALPVALALLGGAALVQPLSVFATTAVAIGLVHTLGGLTQVSPRHS HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC PLIGALLAAAVAAGQGILQNPAVGTVPLAFWSSLTGVLALLFTLAVSDLRQGRYPEGAPL HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC DLPVPAIILLASALTGLQDLTLWGRLSLHGVFAGLAVLLCAHAGGMGWGAAAGAVIGMSS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH FLTVLAHPPGTGMFGPPTLSDSQAMAYVVAGFLGGAFRDLRKPGVGLAYALGFLSYSMAT HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC QGQGAVLEAMALSAGTATLLFWLLPSAWAVRLPQALRSERAAPPEPDAGAPVDGTVREAR CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH ERLLAVAQALREIQRTYTQVAAVASPPAPVLERRLRSLKEQVCQSCSLRAQCWERDADET HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCCHHHH RQLMDDLWRRIDLEGPLPLSPLPDQLEARCIHPAQVAVTLNHLYDLERSDRALARRLEEG HHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH RAVAGEYIHSVARMLDRMAEDIAAGGRPGRAMPAVFTATAAVARMPKRGGHISGDSAVTG HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEC PLSGGRFLLALSDGMGVGREAAVQSGECVRLLQQLLDAGFNAEVAVKTVNSVLLLRGPGD CCCCCEEEEEECCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCEEEHEEECCEEEEECCCC TFATLDLAVLDLATGQAEFVKVGAAPSFVRRGGDVTVVRVPAPPAGAVPDVEVEPERRVL CHHHHHHHHHHHCCCCHHEEEECCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHEE GDGDLIVMVSDGVLEAARDQEDKERWLLEQLSREQSADPEEVAERVLARALELTPAPEDD CCCCEEEEECCCHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCH LTVVVARMALADGAAEAAPRPKPSGQWVPAMTAPRGGPGGNGGRRARRR HHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure AFSRSSDRPEPSGRRWTGLQGWLQRRLSWAWRPLLYAGIVIAFLMGRAQPVSPAAPFSI CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH AFYTAVRAAGFGGLAALPVALALLGGAALVQPLSVFATTAVAIGLVHTLGGLTQVSPRHS HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC PLIGALLAAAVAAGQGILQNPAVGTVPLAFWSSLTGVLALLFTLAVSDLRQGRYPEGAPL HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC DLPVPAIILLASALTGLQDLTLWGRLSLHGVFAGLAVLLCAHAGGMGWGAAAGAVIGMSS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH FLTVLAHPPGTGMFGPPTLSDSQAMAYVVAGFLGGAFRDLRKPGVGLAYALGFLSYSMAT HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC QGQGAVLEAMALSAGTATLLFWLLPSAWAVRLPQALRSERAAPPEPDAGAPVDGTVREAR CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH ERLLAVAQALREIQRTYTQVAAVASPPAPVLERRLRSLKEQVCQSCSLRAQCWERDADET HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCCHHHH RQLMDDLWRRIDLEGPLPLSPLPDQLEARCIHPAQVAVTLNHLYDLERSDRALARRLEEG HHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH RAVAGEYIHSVARMLDRMAEDIAAGGRPGRAMPAVFTATAAVARMPKRGGHISGDSAVTG HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEC PLSGGRFLLALSDGMGVGREAAVQSGECVRLLQQLLDAGFNAEVAVKTVNSVLLLRGPGD CCCCCEEEEEECCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCEEEHEEECCEEEEECCCC TFATLDLAVLDLATGQAEFVKVGAAPSFVRRGGDVTVVRVPAPPAGAVPDVEVEPERRVL CHHHHHHHHHHHCCCCHHEEEECCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHEE GDGDLIVMVSDGVLEAARDQEDKERWLLEQLSREQSADPEEVAERVLARALELTPAPEDD CCCCEEEEECCCHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCH LTVVVARMALADGAAEAAPRPKPSGQWVPAMTAPRGGPGGNGGRRARRR HHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8830262 [H]