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The map label for this gene is yxjL [H]

Identifier: 51894297

GI number: 51894297

Start: 3359329

End: 3359994

Strand: Reverse

Name: yxjL [H]

Synonym: STH3162

Alternate gene names: 51894297

Gene position: 3359994-3359329 (Counterclockwise)

Preceding gene: 51894298

Following gene: 51894296

Centisome position: 94.22

GC content: 68.02

Gene sequence:

>666_bases
ATGGACGGACGGAAGATCCGCATCATGATCGTGGACGACCAGTCCCTGCTCAGGCGGGGGCTCGCCGCGTTGCTGAACCG
CAACCCGGACATGGAGGTGGTCGGCGAGGCGTCGAGCGGCGAGGAGGCCCTGCGGATGGCGGCCGAGCTGAAACCGGACG
TGATCCTGATGGACGTGCGCATGCCGGGGATGGACGGTGTCACGGCGACGCGGGAGCTGGTCCGCAGCGGCACCGCCGCG
GGGGTCATCATCCTGACCACCTTCGACGACGACGAGTACATCTTCGAAGGGCTGGCCGCCGGCGCGCGCGGGTACCTGCT
GAAGGACGCCGAGTACGACGAGCTCTCGCAGGCGATCCGCACCGTGGCCGCGGGGGAGTCGCTGCTGCAGCCGCAGATTA
CCACCCGCGTCCTGAAGGAGTTCAGCCGGCTCTCCTCCATGGCCGCCAGCCGGCCGAAAGCGCGGCCGCTGGTCGAGCCG
CTCACCGAGCGGGAGACCGAGGTCCTGCGCCTGATGGCCTCAGGCGCCTCCAACCAGGATATCGCGGAGAAGCTCTTCAT
CGGCCAGGGTACTGTAAAGCATCACGTGCGCTCCATCTTCGCCAAACTCGGGGCGCGGGACCGGGTGCACGCGATCCTGC
TGGCTCAGGAACTCAACCTGGTCTAG

Upstream 100 bases:

>100_bases
GCGCAGGCGCTCAACGGGGAGTTTGATGCAGGCCCGCGCAGTGATGGCGGCTTTCAGGTATCATTGAGCCTGCCGATCGG
TCTCTGATGGAGGGAGCCCC

Downstream 100 bases:

>100_bases
TCGGGGACAAGCCGGACTATCCCTTTGGGCAGAGGCGCCGCACACCGCGGCGCCCAAACTCTGCCCTGCGATCGGACCCG
TGGGCAGATGCGCCGCCGCC

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MDGRKIRIMIVDDQSLLRRGLAALLNRNPDMEVVGEASSGEEALRMAAELKPDVILMDVRMPGMDGVTATRELVRSGTAA
GVIILTTFDDDEYIFEGLAAGARGYLLKDAEYDELSQAIRTVAAGESLLQPQITTRVLKEFSRLSSMAASRPKARPLVEP
LTERETEVLRLMASGASNQDIAEKLFIGQGTVKHHVRSIFAKLGARDRVHAILLAQELNLV

Sequences:

>Translated_221_residues
MDGRKIRIMIVDDQSLLRRGLAALLNRNPDMEVVGEASSGEEALRMAAELKPDVILMDVRMPGMDGVTATRELVRSGTAA
GVIILTTFDDDEYIFEGLAAGARGYLLKDAEYDELSQAIRTVAAGESLLQPQITTRVLKEFSRLSSMAASRPKARPLVEP
LTERETEVLRLMASGASNQDIAEKLFIGQGTVKHHVRSIFAKLGARDRVHAILLAQELNLV
>Mature_221_residues
MDGRKIRIMIVDDQSLLRRGLAALLNRNPDMEVVGEASSGEEALRMAAELKPDVILMDVRMPGMDGVTATRELVRSGTAA
GVIILTTFDDDEYIFEGLAAGARGYLLKDAEYDELSQAIRTVAAGESLLQPQITTRVLKEFSRLSSMAASRPKARPLVEP
LTERETEVLRLMASGASNQDIAEKLFIGQGTVKHHVRSIFAKLGARDRVHAILLAQELNLV

Specific function: Probable member of the two-component regulatory system yxjM/yxjL [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=209, Percent_Identity=40.1913875598086, Blast_Score=133, Evalue=8e-33,
Organism=Escherichia coli, GI1787473, Length=210, Percent_Identity=36.6666666666667, Blast_Score=110, Evalue=5e-26,
Organism=Escherichia coli, GI1788222, Length=210, Percent_Identity=32.3809523809524, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1790102, Length=204, Percent_Identity=32.3529411764706, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1786747, Length=214, Percent_Identity=25.7009345794392, Blast_Score=91, Evalue=4e-20,
Organism=Escherichia coli, GI1788712, Length=209, Percent_Identity=28.2296650717703, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1788550, Length=111, Percent_Identity=38.7387387387387, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI87082052, Length=103, Percent_Identity=33.9805825242718, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788546, Length=209, Percent_Identity=25.3588516746411, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR011990
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 24184; Mature: 24184

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGRKIRIMIVDDQSLLRRGLAALLNRNPDMEVVGEASSGEEALRMAAELKPDVILMDVR
CCCCEEEEEEECCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEEE
MPGMDGVTATRELVRSGTAAGVIILTTFDDDEYIFEGLAAGARGYLLKDAEYDELSQAIR
CCCCCCHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHCCCCCCEECCCCHHHHHHHHH
TVAAGESLLQPQITTRVLKEFSRLSSMAASRPKARPLVEPLTERETEVLRLMASGASNQD
HHHHCHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHH
IAEKLFIGQGTVKHHVRSIFAKLGARDRVHAILLAQELNLV
HHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDGRKIRIMIVDDQSLLRRGLAALLNRNPDMEVVGEASSGEEALRMAAELKPDVILMDVR
CCCCEEEEEEECCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEEE
MPGMDGVTATRELVRSGTAAGVIILTTFDDDEYIFEGLAAGARGYLLKDAEYDELSQAIR
CCCCCCHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHCCCCCCEECCCCHHHHHHHHH
TVAAGESLLQPQITTRVLKEFSRLSSMAASRPKARPLVEPLTERETEVLRLMASGASNQD
HHHHCHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHH
IAEKLFIGQGTVKHHVRSIFAKLGARDRVHAILLAQELNLV
HHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8978088; 8969509; 9384377 [H]