| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is 51894227
Identifier: 51894227
GI number: 51894227
Start: 3292813
End: 3293184
Strand: Reverse
Name: 51894227
Synonym: STH3092
Alternate gene names: NA
Gene position: 3293184-3292813 (Counterclockwise)
Preceding gene: 51894228
Following gene: 51894226
Centisome position: 92.35
GC content: 62.37
Gene sequence:
>372_bases GTGACCGGTACGGCGGTTCAGCGCTTCCCGGAGGCCGGAGACGACCGCAGGAAACTGTGCCCGCGCGCTTTACAACCCGT GCGCGGCCGTGCTACAATTTGTACACTGGTCGCGCTGCCAGGTTTTATTTGTGTTGGGGCATTTTCTATCTCGAGGGTGG TCGTGATCATGGAACGCATCAAAGCCTTCTTTGAGGGGATTCGTACGTACCTGCGCGAGGTCGTCGGCGAACTCCGGAAG GTCGTCTGGCCGAGCCGTGAGCGCGTCATCAAGGCGACCGGCATCGTGGTGGCCATGGTCGCGCTGGTCGCCGGGTTTCT CTACCTCTGGGACCTGGGCATCGGGGCGCTGATGGAGCTGCTCCTCGCCTAG
Upstream 100 bases:
>100_bases CCCTCACAGGGGCGTAGCTCAACTGGTAGAGCAACGGTCTCCAAAACCGTAGGTTGCGGGTTCGAGTCCTGCCGCCCCTG CCACCTGAACCGCCGCACCG
Downstream 100 bases:
>100_bases GTCGCAACCCACGCAAAGGCAGGTGTTGGGGGCCTGGCCTGCCCCCCGGCTCATGGCAGAGAAGCACTGGTATGTCGTCC ACACCTACTCCGGGTATGAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 123; Mature: 122
Protein sequence:
>123_residues MTGTAVQRFPEAGDDRRKLCPRALQPVRGRATICTLVALPGFICVGAFSISRVVVIMERIKAFFEGIRTYLREVVGELRK VVWPSRERVIKATGIVVAMVALVAGFLYLWDLGIGALMELLLA
Sequences:
>Translated_123_residues MTGTAVQRFPEAGDDRRKLCPRALQPVRGRATICTLVALPGFICVGAFSISRVVVIMERIKAFFEGIRTYLREVVGELRK VVWPSRERVIKATGIVVAMVALVAGFLYLWDLGIGALMELLLA >Mature_122_residues TGTAVQRFPEAGDDRRKLCPRALQPVRGRATICTLVALPGFICVGAFSISRVVVIMERIKAFFEGIRTYLREVVGELRKV VWPSRERVIKATGIVVAMVALVAGFLYLWDLGIGALMELLLA
Specific function: Unknown
COG id: COG0690
COG function: function code U; Preprotein translocase subunit SecE
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13577; Mature: 13445
Theoretical pI: Translated: 10.54; Mature: 10.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGTAVQRFPEAGDDRRKLCPRALQPVRGRATICTLVALPGFICVGAFSISRVVVIMERI CCCHHHHHCCCCCCHHHHHCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KAFFEGIRTYLREVVGELRKVVWPSRERVIKATGIVVAMVALVAGFLYLWDLGIGALMEL HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLA HHC >Mature Secondary Structure TGTAVQRFPEAGDDRRKLCPRALQPVRGRATICTLVALPGFICVGAFSISRVVVIMERI CCHHHHHCCCCCCHHHHHCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KAFFEGIRTYLREVVGELRKVVWPSRERVIKATGIVVAMVALVAGFLYLWDLGIGALMEL HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLA HHC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA