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The map label for this gene is fliY [H]

Identifier: 51894129

GI number: 51894129

Start: 3213736

End: 3214116

Strand: Reverse

Name: fliY [H]

Synonym: STH2993

Alternate gene names: 51894129

Gene position: 3214116-3213736 (Counterclockwise)

Preceding gene: 51894130

Following gene: 51894128

Centisome position: 90.13

GC content: 69.82

Gene sequence:

>381_bases
ATGGCCAAGCACGGACTGACCCAGGAAGAGATCGCCGCCCTCTTCGCCCAGGCACGGCAGGGTGAGCAGAAGCCGGAGGC
GGCCGCCTTTCCCGACCTGAACCCGGAGGGGTCGGCCCAGGGGGACCCGTCGCCGCTGGGGCTGCTCGCCGACGTGGAAC
TGGAACTGACGGTGGAGCTCGGCCAGAGCCGGCGGAGCCTCAGGGAGATCCTGGCGATGGGCCCGGGCTCGGTCCTGGAG
CTGGACAAGCACGCGGGTGAGGCGGTGGATCTCCTGGTCAACGGTCAGCTGGTGGCCCGCGGGGAGGTCGTGGTGATCGG
CGAGAACTATGGCATCCGCATCACCGAGCTGATCAACCCCGAGGGGAGCGCCGGCCGATGA

Upstream 100 bases:

>100_bases
CCCAGGCGATCAAGAACGGGCTCGACGGCCTCCTGCCCGGCCACGTGACCCGGGTCTACGTGACCGACATGGTGATCCAG
TAGGGAAGGAGGGGCGATCG

Downstream 100 bases:

>100_bases
CCGGCACCGAGACCCCGGTCCAGGCCTGGCCCGGCGGCGGCTCGGGCAGTCTGCTGCTCTTCCTGTTCAGCGCGCTCCTG
GTCATCGCGCTGGCCTTCGT

Product: flagellar motor switch protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MAKHGLTQEEIAALFAQARQGEQKPEAAAFPDLNPEGSAQGDPSPLGLLADVELELTVELGQSRRSLREILAMGPGSVLE
LDKHAGEAVDLLVNGQLVARGEVVVIGENYGIRITELINPEGSAGR

Sequences:

>Translated_126_residues
MAKHGLTQEEIAALFAQARQGEQKPEAAAFPDLNPEGSAQGDPSPLGLLADVELELTVELGQSRRSLREILAMGPGSVLE
LDKHAGEAVDLLVNGQLVARGEVVVIGENYGIRITELINPEGSAGR
>Mature_125_residues
AKHGLTQEEIAALFAQARQGEQKPEAAAFPDLNPEGSAQGDPSPLGLLADVELELTVELGQSRRSLREILAMGPGSVLEL
DKHAGEAVDLLVNGQLVARGEVVVIGENYGIRITELINPEGSAGR

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=84, Percent_Identity=46.4285714285714, Blast_Score=87, Evalue=4e-19,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 13278; Mature: 13147

Theoretical pI: Translated: 4.24; Mature: 4.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKHGLTQEEIAALFAQARQGEQKPEAAAFPDLNPEGSAQGDPSPLGLLADVELELTVEL
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEEEC
GQSRRSLREILAMGPGSVLELDKHAGEAVDLLVNGQLVARGEVVVIGENYGIRITELINP
CHHHHHHHHHHHCCCCCEEEECCCCCCEEEEEECCEEEECCCEEEEECCCCEEEEEEECC
EGSAGR
CCCCCC
>Mature Secondary Structure 
AKHGLTQEEIAALFAQARQGEQKPEAAAFPDLNPEGSAQGDPSPLGLLADVELELTVEL
CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEEEC
GQSRRSLREILAMGPGSVLELDKHAGEAVDLLVNGQLVARGEVVVIGENYGIRITELINP
CHHHHHHHHHHHCCCCCEEEECCCCCCEEEEEECCEEEECCCEEEEECCCCEEEEEEECC
EGSAGR
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9403685 [H]