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The map label for this gene is fliR [H]

Identifier: 51894125

GI number: 51894125

Start: 3211483

End: 3212262

Strand: Reverse

Name: fliR [H]

Synonym: STH2989

Alternate gene names: 51894125

Gene position: 3212262-3211483 (Counterclockwise)

Preceding gene: 51894126

Following gene: 51894124

Centisome position: 90.08

GC content: 68.46

Gene sequence:

>780_bases
ATGGAACAGCTCTACGCGCAGCTCGCCGCCCTCCTGCTGGGCGCTTCCCGGGCCATGGGCGTCTTCACCGCAGCGCCCGT
CTTCTCCACCCGGTTCGTGCCGTTTCAGGTGCGGGTGGCCCTGAGCTTCGTGCTGGGATTCTTCCTCATGCCGGCCATCG
AAGTGGCCCCCGGGCGGACGGAGGGGGTGCACCTGCTCACTGCCGCCCTGGTGGAGATGGTGGTAGGCCTGGTCATCGGG
TTCCTGTGCCTGATGGTGATCAGCGTGCTGCAGATCGCCGGCGCGCTGATGGACCTGGAGATGGGCTTTGCGCTGGCGGG
CCTGTTCGACCCGATCACCGGCCAGGGCGCCACGGTGCTGGGCAACCTGTTTCAGACCACGGCCCTGGTGTTCTTCATCG
CCCTCGACGGCCACCACTGGCTGATCCGGGCGTTTGCGCAGAGCTACGCCCTGGTGCCGGCAGGCGGGCCGGTGGAGGGC
ACCGCCAGCGGTCTCTACGTCGCCCGGCTCTTCGGCGACCTGCTGGCGCTGGCTGTGCAGCTCGTCCTGCCCTTTGTGGC
GGTCATGCTGCTCACCATGGTGGCGTTCGCGGTGCTGAACCGGGCCGTGGCGCAGCTCAACATCTTCGCCATCGGTCTGG
GCACCAAGACCTTCGTAGGGCTTCTGCTCCTGGTGCTGCTGCTGCCGTTCTACGGGCGGCCGCTCACGGCCCTGTTCGAG
GCCGGCTTCCGGGAGGCCCTGCGGATACTCGAGCTCATGCGGGCCGTGCCGGGGGGGTAA

Upstream 100 bases:

>100_bases
GGCGGGTCTGGTCGTGTTCGGGCCCTGGATGCTCACCACCCTCATGGATTTCGCCCGGCGCGTGATGGACCTGCTGCCCC
GGATGGTGCGCTGACGGCCG

Downstream 100 bases:

>100_bases
GCCGTGGACCTGCAGCTCTTTGCGGAGCGCACCGAGGAGCCAACGCCACGAAGGCTCCAGAAGGCCCGTGAGGAGGGCCG
CGTCGCCCGGTCCACCGACC

Product: flagellar biosynthetic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MEQLYAQLAALLLGASRAMGVFTAAPVFSTRFVPFQVRVALSFVLGFFLMPAIEVAPGRTEGVHLLTAALVEMVVGLVIG
FLCLMVISVLQIAGALMDLEMGFALAGLFDPITGQGATVLGNLFQTTALVFFIALDGHHWLIRAFAQSYALVPAGGPVEG
TASGLYVARLFGDLLALAVQLVLPFVAVMLLTMVAFAVLNRAVAQLNIFAIGLGTKTFVGLLLLVLLLPFYGRPLTALFE
AGFREALRILELMRAVPGG

Sequences:

>Translated_259_residues
MEQLYAQLAALLLGASRAMGVFTAAPVFSTRFVPFQVRVALSFVLGFFLMPAIEVAPGRTEGVHLLTAALVEMVVGLVIG
FLCLMVISVLQIAGALMDLEMGFALAGLFDPITGQGATVLGNLFQTTALVFFIALDGHHWLIRAFAQSYALVPAGGPVEG
TASGLYVARLFGDLLALAVQLVLPFVAVMLLTMVAFAVLNRAVAQLNIFAIGLGTKTFVGLLLLVLLLPFYGRPLTALFE
AGFREALRILELMRAVPGG
>Mature_259_residues
MEQLYAQLAALLLGASRAMGVFTAAPVFSTRFVPFQVRVALSFVLGFFLMPAIEVAPGRTEGVHLLTAALVEMVVGLVIG
FLCLMVISVLQIAGALMDLEMGFALAGLFDPITGQGATVLGNLFQTTALVFFIALDGHHWLIRAFAQSYALVPAGGPVEG
TASGLYVARLFGDLLALAVQLVLPFVAVMLLTMVAFAVLNRAVAQLNIFAIGLGTKTFVGLLLLVLLLPFYGRPLTALFE
AGFREALRILELMRAVPGG

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=244, Percent_Identity=27.0491803278689, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 27456; Mature: 27456

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQLYAQLAALLLGASRAMGVFTAAPVFSTRFVPFQVRVALSFVLGFFLMPAIEVAPGRT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
EGVHLLTAALVEMVVGLVIGFLCLMVISVLQIAGALMDLEMGFALAGLFDPITGQGATVL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
GNLFQTTALVFFIALDGHHWLIRAFAQSYALVPAGGPVEGTASGLYVARLFGDLLALAVQ
HHHHHHHHHHHHHHCCCCHHHHHHHHHHCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LVLPFVAVMLLTMVAFAVLNRAVAQLNIFAIGLGTKTFVGLLLLVLLLPFYGRPLTALFE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHCCCHHHHHHH
AGFREALRILELMRAVPGG
HHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEQLYAQLAALLLGASRAMGVFTAAPVFSTRFVPFQVRVALSFVLGFFLMPAIEVAPGRT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
EGVHLLTAALVEMVVGLVIGFLCLMVISVLQIAGALMDLEMGFALAGLFDPITGQGATVL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
GNLFQTTALVFFIALDGHHWLIRAFAQSYALVPAGGPVEGTASGLYVARLFGDLLALAVQ
HHHHHHHHHHHHHHCCCCHHHHHHHHHHCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LVLPFVAVMLLTMVAFAVLNRAVAQLNIFAIGLGTKTFVGLLLLVLLLPFYGRPLTALFE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHCCCHHHHHHH
AGFREALRILELMRAVPGG
HHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8299954; 9384377 [H]