| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is yceI [C]
Identifier: 51894086
GI number: 51894086
Start: 3174309
End: 3174839
Strand: Reverse
Name: yceI [C]
Synonym: STH2950
Alternate gene names: 51894086
Gene position: 3174839-3174309 (Counterclockwise)
Preceding gene: 51894089
Following gene: 51894085
Centisome position: 89.03
GC content: 64.03
Gene sequence:
>531_bases ATGGCCAAGAGCGTATGGGTAGTGGACAATTCGCACAGCCTGGTTGAGTTCGCCGTGCGGCACATGATGATCGCGACGGT GAAGGGCCGCTTCACGCAGGTGGAGGGCCGCATTGAGGTCGATCCCGCGGATATCACCGGTGCATACTTCGAGGGCAGCG TCCCGGTCGCATCCATCAACACCGCCGACTCCGCCCGCGACGACCATCTGCGTTCGGCCGACTTCTTCGATGCCCAGAAC TATCCGACTCTGACCTTCAAGAGCACGAAGGTGGAGCGCGCCGGCGACGGCTACAAGCTGACCGGCGACCTGACCATCCG CGGCGTCACCAAGCCGGTGACCTTCGACCTCGAGTTTGCCGGCGTGGGCAAGGACCCGTGGGGGAACGAGAAGATCGGCT TCTCGGCCACCGGCAAGATCAACCGCAAGGACTTCGGGCTCACCTGGAACGCGGTGCTGGAGACCGGCGGCGTCCTGGTG GGTGAAGAGGTGAAGATCGAACTGCACCTGGAGGCCGCCAGGCAGGCCTGA
Upstream 100 bases:
>100_bases GGCCCCGGTCATCTGCCCGTACCTACTTACGGTTTGACACCAACTAACGATATAGAAGGCACGGGCCTACCCCGGCCGAA CACACGGGAGGAGGAAGCTT
Downstream 100 bases:
>100_bases GGGCGGCTTCACCGGTTACCAGCATTTGGACGGGCGCAAGCTCGGCCCGGATCCCCGCCGCGGCCGCGAGGTCATGTATA CTGAACACAGATCATCAACG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 176; Mature: 175
Protein sequence:
>176_residues MAKSVWVVDNSHSLVEFAVRHMMIATVKGRFTQVEGRIEVDPADITGAYFEGSVPVASINTADSARDDHLRSADFFDAQN YPTLTFKSTKVERAGDGYKLTGDLTIRGVTKPVTFDLEFAGVGKDPWGNEKIGFSATGKINRKDFGLTWNAVLETGGVLV GEEVKIELHLEAARQA
Sequences:
>Translated_176_residues MAKSVWVVDNSHSLVEFAVRHMMIATVKGRFTQVEGRIEVDPADITGAYFEGSVPVASINTADSARDDHLRSADFFDAQN YPTLTFKSTKVERAGDGYKLTGDLTIRGVTKPVTFDLEFAGVGKDPWGNEKIGFSATGKINRKDFGLTWNAVLETGGVLV GEEVKIELHLEAARQA >Mature_175_residues AKSVWVVDNSHSLVEFAVRHMMIATVKGRFTQVEGRIEVDPADITGAYFEGSVPVASINTADSARDDHLRSADFFDAQNY PTLTFKSTKVERAGDGYKLTGDLTIRGVTKPVTFDLEFAGVGKDPWGNEKIGFSATGKINRKDFGLTWNAVLETGGVLVG EEVKIELHLEAARQA
Specific function: Unknown
COG id: COG2353
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0312 family [H]
Homologues:
Organism=Escherichia coli, GI1787295, Length=136, Percent_Identity=40.4411764705882, Blast_Score=115, Evalue=2e-27,
Paralogues:
None
Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007372 [H]
Pfam domain/function: PF04264 YceI [H]
EC number: NA
Molecular weight: Translated: 19208; Mature: 19077
Theoretical pI: Translated: 5.30; Mature: 5.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKSVWVVDNSHSLVEFAVRHMMIATVKGRFTQVEGRIEVDPADITGAYFEGSVPVASIN CCCEEEEEECCCHHHHHHHHHHHEEEECCCEEEECCEEEECCCCCCCEEEECCCCEEEEC TADSARDDHLRSADFFDAQNYPTLTFKSTKVERAGDGYKLTGDLTIRGVTKPVTFDLEFA CCCCCCCCCCCCCCCCCCCCCCEEEEECCEEECCCCCEEEEEEEEEEEECCCEEEEEEEE GVGKDPWGNEKIGFSATGKINRKDFGLTWNAVLETGGVLVGEEVKIELHLEAARQA ECCCCCCCCCEECEEECCCCCCCCCCEEEEHEECCCCEEECCEEEEEEEEEECCCC >Mature Secondary Structure AKSVWVVDNSHSLVEFAVRHMMIATVKGRFTQVEGRIEVDPADITGAYFEGSVPVASIN CCEEEEEECCCHHHHHHHHHHHEEEECCCEEEECCEEEECCCCCCCEEEECCCCEEEEC TADSARDDHLRSADFFDAQNYPTLTFKSTKVERAGDGYKLTGDLTIRGVTKPVTFDLEFA CCCCCCCCCCCCCCCCCCCCCCEEEEECCEEECCCCCEEEEEEEEEEEECCCEEEEEEEE GVGKDPWGNEKIGFSATGKINRKDFGLTWNAVLETGGVLVGEEVKIELHLEAARQA ECCCCCCCCCEECEEECCCCCCCCCCEEEEHEECCCCEEECCEEEEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11418146 [H]