| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is perR [H]
Identifier: 51894012
GI number: 51894012
Start: 3100558
End: 3101028
Strand: Reverse
Name: perR [H]
Synonym: STH2876
Alternate gene names: 51894012
Gene position: 3101028-3100558 (Counterclockwise)
Preceding gene: 51894016
Following gene: 51894011
Centisome position: 86.96
GC content: 69.21
Gene sequence:
>471_bases ATGACCGAGAGCGGGCACCAGGTCGCGGAACAGCACCGGGAGGATCCGTTCACCGCGGGCCTGCGCGCCGCCGGGCTGAA GCTCACGGCCCAGCGCGCCGCCATCTGCGCGGCCCTCGCGGACATGGCGGGGAAGCAGCACCCCACCGTGCAGGAGATCT TCGAAGCCGCCCGGAAGCACCACCCCGGCGTCAGCCTTGCCACGGTGTACAATACCCTGACCGTCCTGAAGGAGCGGGGC CTGGTCTATGAGCTGGGGCCGGACGCGGCGGGCGCCGTCCACTACGAGCTGGACGTCGACACGCACGTCAACGTCATCTG CATCCGCTGCAAGCAGGTGATCGACCTGCACCACATCTCCACCGGACTGGAGGAAATGGTGCAGGCCGAGACCGGATACC GGCTGGTGGGCGCCCAGATGCTCTACTACGGCATCTGCCCGGCCTGCGCCCGCGACGGTGCCGCCGACTGA
Upstream 100 bases:
>100_bases AAAACTGGTGATGGGAGGTTCCGGGCAAAAGACTATTGCAGTCACGCGGGATCTGATATACTGTTAACTGGAATGATTCT CGCTGTGGGGGGTGAACGCC
Downstream 100 bases:
>100_bases TTCCCCTCCGTCTGCCGATCCCTTTCGCCACGGCTCGGGCCGTGGCGTATATTTTTGTGTTCGGGCCCATCATCCTCTTG CCAACCGCCCTGGAGAGAGT
Product: Fur family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 156; Mature: 155
Protein sequence:
>156_residues MTESGHQVAEQHREDPFTAGLRAAGLKLTAQRAAICAALADMAGKQHPTVQEIFEAARKHHPGVSLATVYNTLTVLKERG LVYELGPDAAGAVHYELDVDTHVNVICIRCKQVIDLHHISTGLEEMVQAETGYRLVGAQMLYYGICPACARDGAAD
Sequences:
>Translated_156_residues MTESGHQVAEQHREDPFTAGLRAAGLKLTAQRAAICAALADMAGKQHPTVQEIFEAARKHHPGVSLATVYNTLTVLKERG LVYELGPDAAGAVHYELDVDTHVNVICIRCKQVIDLHHISTGLEEMVQAETGYRLVGAQMLYYGICPACARDGAAD >Mature_155_residues TESGHQVAEQHREDPFTAGLRAAGLKLTAQRAAICAALADMAGKQHPTVQEIFEAARKHHPGVSLATVYNTLTVLKERGL VYELGPDAAGAVHYELDVDTHVNVICIRCKQVIDLHHISTGLEEMVQAETGYRLVGAQMLYYGICPACARDGAAD
Specific function: Manganese-dependent repressor that controls a regulon of oxidative stress resistance and iron-storage proteins. May act as a hydrogen peroxide and organic hydroperoxide sensor [H]
COG id: COG0735
COG function: function code P; Fe2+/Zn2+ uptake regulation proteins
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Fur family [H]
Homologues:
None
Paralogues:
None
Copy number: 3432 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002481 [H]
Pfam domain/function: PF01475 FUR [H]
EC number: NA
Molecular weight: Translated: 16850; Mature: 16719
Theoretical pI: Translated: 6.22; Mature: 6.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTESGHQVAEQHREDPFTAGLRAAGLKLTAQRAAICAALADMAGKQHPTVQEIFEAARKH CCCCHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC HPGVSLATVYNTLTVLKERGLVYELGPDAAGAVHYELDVDTHVNVICIRCKQVIDLHHIS CCCCHHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHH TGLEEMVQAETGYRLVGAQMLYYGICPACARDGAAD HHHHHHHHHHCCCHHHHHHHHHHHCCHHHCCCCCCC >Mature Secondary Structure TESGHQVAEQHREDPFTAGLRAAGLKLTAQRAAICAALADMAGKQHPTVQEIFEAARKH CCCHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC HPGVSLATVYNTLTVLKERGLVYELGPDAAGAVHYELDVDTHVNVICIRCKQVIDLHHIS CCCCHHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHH TGLEEMVQAETGYRLVGAQMLYYGICPACARDGAAD HHHHHHHHHHCCCHHHHHHHHHHHCCHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA