Definition Symbiobacterium thermophilum IAM 14863 chromosome, complete genome.
Accession NC_006177
Length 3,566,135

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The map label for this gene is 51893620

Identifier: 51893620

GI number: 51893620

Start: 2664576

End: 2666384

Strand: Reverse

Name: 51893620

Synonym: STH2482

Alternate gene names: NA

Gene position: 2666384-2664576 (Counterclockwise)

Preceding gene: 51893621

Following gene: 51893619

Centisome position: 74.77

GC content: 74.3

Gene sequence:

>1809_bases
ATGGCGATGAAGAGCGCGAAGCGGGCCTTCGTATGTGCGTGGCTCTGCCTGCTCCTTGTGGCAGGCTGCACCTTGCCGCT
GTCCGCCCCGGTCGTGCAGGAGGCTGAACCGGCCACGGACAATGTGCGTCAGTCGGGCGCGCCCGCGCTCCCGGAGGAGC
GTGCGGGCGCGCCGCCGCGCCTGGTCGACCGGCTGGTCTACCGGCAGACCCCCGTGCTGACCCGGGTCGTGGACGGCATC
ACCGCCCTCCGCCTGGAGCCCTGGCAGCAGGAGGTGGCCGTCGGATCCGGCCCGGTGGAGCTGACCTGGCAGCTGGACAC
CCACGACGCCAGGCCCTACCGCGGGCTGCTGCGCACCGAGGGGGCGGAGCCGGCCCAGGTGCGCACGGTGCTCGGCGTGA
TCCAGGCCCGGTTTGAGCCGCCGCTGCCGGACCGGTGGACGGCATGGCTGGAGGGGGTCGCGGGCTCGCATACGCAGCTG
GTCCGCCACCCGGAGCCGACGGTGGTCCTGGGCTACCGGGCGGCGGACGGTACGGTGGTTCCCCTGGAGGGGACCGAGGC
GATCCTGCCTGCGGGGCCGCTCCGGCTGCTGCTGGAGTTTGACCAGGCGGTGGATGCGGACAGCCTGACTTCCTGGCTTT
CCGGCGTGCGGCAGTGCACCGCCCTGCCCGTCGCGCTGGCCCAGGGGACCGGCGATCGCTGGTGGATCGAGACGGAGGAG
GCGCCGGTCCGCCTTTACCTTGACCTGCGGACCGTTGTCGCGGCCGGGAGCGGGCTGCCTGTGGCCCGCTACCCCCTGAC
GGTGTGGAGCGAGGCCGGGCTCCCTTACCTGGAGCGGGTGGACCTGGCGACGGGCAGGGCCGAGGAACTGCTCCGCCTGC
CGCCGGAGATCCGCGAGGCCTGGCCTTCGCCCGACGGCGCCCGAATCGCCCTGCGGTCCTGGCGCAGCCACGGGGACCAG
TGGCGGGACGACCGGGTGAGCGTGGTCGATCTGACCGGAAACCAGGTGATCGGCACAACGCTTCAGGGGGGCTCCCTCCA
CTGGGTCGGCGGCCGGCTGGTCAACCGGGTGCCCGGGGGATCGGCGGAGGGGGCCTGGGAGCTCTGGGACCCCGACACGG
GGGAGAAGACCGGCGGGGAGCCGCCGCTGTCGGCGTTGGCCGCCGGGATGCCGGAAGCCGTGGCTTTCTCGCCCGACGGA
AGGGCCGCCGCCTACGTGGGGCCGGCCCCGGGTGCGGGCGCGGGCGGGGCCGAACCTGCCCCTTCCCCGCTGGTCCTGGT
GGATCTGCGTACAGGCACGGTGCGCACCATCCCGGGGTTCGTCGAGACTGGCGGCCCGTCCGGGGAGGGCGCCGCGCTCG
AGGTGGCCTGGAGCCCCGACGGGAACCGGCTTGCGGCGCTGGAACCCGTGACCGGGGCTCGGGGGAGCCGGGTCGTGGTC
TACGACCTGGAGCGGGACGCGCGCACAACCGCCGCCGAGCTGCCGGTTCATGCCTGGCAGGCGCGGCTGGCCTGGAGTCC
CCGGGGTGACCGGCTGCTGGCCTACGGCGGAGGGGGCGGGACCTGGATCATCGATCCGGAGGGCGGGGACGCCGTCCATG
TGGCAGACTCAGGACACGCGCAGGCCTTCTGGGACCGGACAGGGGAACGGATCCTGGCGGCCAGGGGGCCCTGGGACGGG
GTCTTCGTCCACACCCTCGCCGACGGCACCCGGGTGGAACTGGGGGATGGCCTGCCCGCCGGCTGGGCCGGAGACGCCGT
GTACATCATCCGCCGGCCGTACGCCCCCTGCGGACTGCCCCTGCCCTGA

Upstream 100 bases:

>100_bases
TCGATCTATTACTGCGACGGCTGCCGGCAGCCCTTCGAGCGGATGAAGCGGGTGTGAACCTCGGCCCGCTCTTCATCGTC
AGACTTGTGACGGAAGGATG

Downstream 100 bases:

>100_bases
CCCCCGACCGACACGGATCGAGGCGCCCCGCCGCGGCCATCGCCGGCGGGGCGCCCGCGTCCCTGCCGCCCAGGGATTTC
CGGCCTCCCGCTCGGGACAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 602; Mature: 601

Protein sequence:

>602_residues
MAMKSAKRAFVCAWLCLLLVAGCTLPLSAPVVQEAEPATDNVRQSGAPALPEERAGAPPRLVDRLVYRQTPVLTRVVDGI
TALRLEPWQQEVAVGSGPVELTWQLDTHDARPYRGLLRTEGAEPAQVRTVLGVIQARFEPPLPDRWTAWLEGVAGSHTQL
VRHPEPTVVLGYRAADGTVVPLEGTEAILPAGPLRLLLEFDQAVDADSLTSWLSGVRQCTALPVALAQGTGDRWWIETEE
APVRLYLDLRTVVAAGSGLPVARYPLTVWSEAGLPYLERVDLATGRAEELLRLPPEIREAWPSPDGARIALRSWRSHGDQ
WRDDRVSVVDLTGNQVIGTTLQGGSLHWVGGRLVNRVPGGSAEGAWELWDPDTGEKTGGEPPLSALAAGMPEAVAFSPDG
RAAAYVGPAPGAGAGGAEPAPSPLVLVDLRTGTVRTIPGFVETGGPSGEGAALEVAWSPDGNRLAALEPVTGARGSRVVV
YDLERDARTTAAELPVHAWQARLAWSPRGDRLLAYGGGGGTWIIDPEGGDAVHVADSGHAQAFWDRTGERILAARGPWDG
VFVHTLADGTRVELGDGLPAGWAGDAVYIIRRPYAPCGLPLP

Sequences:

>Translated_602_residues
MAMKSAKRAFVCAWLCLLLVAGCTLPLSAPVVQEAEPATDNVRQSGAPALPEERAGAPPRLVDRLVYRQTPVLTRVVDGI
TALRLEPWQQEVAVGSGPVELTWQLDTHDARPYRGLLRTEGAEPAQVRTVLGVIQARFEPPLPDRWTAWLEGVAGSHTQL
VRHPEPTVVLGYRAADGTVVPLEGTEAILPAGPLRLLLEFDQAVDADSLTSWLSGVRQCTALPVALAQGTGDRWWIETEE
APVRLYLDLRTVVAAGSGLPVARYPLTVWSEAGLPYLERVDLATGRAEELLRLPPEIREAWPSPDGARIALRSWRSHGDQ
WRDDRVSVVDLTGNQVIGTTLQGGSLHWVGGRLVNRVPGGSAEGAWELWDPDTGEKTGGEPPLSALAAGMPEAVAFSPDG
RAAAYVGPAPGAGAGGAEPAPSPLVLVDLRTGTVRTIPGFVETGGPSGEGAALEVAWSPDGNRLAALEPVTGARGSRVVV
YDLERDARTTAAELPVHAWQARLAWSPRGDRLLAYGGGGGTWIIDPEGGDAVHVADSGHAQAFWDRTGERILAARGPWDG
VFVHTLADGTRVELGDGLPAGWAGDAVYIIRRPYAPCGLPLP
>Mature_601_residues
AMKSAKRAFVCAWLCLLLVAGCTLPLSAPVVQEAEPATDNVRQSGAPALPEERAGAPPRLVDRLVYRQTPVLTRVVDGIT
ALRLEPWQQEVAVGSGPVELTWQLDTHDARPYRGLLRTEGAEPAQVRTVLGVIQARFEPPLPDRWTAWLEGVAGSHTQLV
RHPEPTVVLGYRAADGTVVPLEGTEAILPAGPLRLLLEFDQAVDADSLTSWLSGVRQCTALPVALAQGTGDRWWIETEEA
PVRLYLDLRTVVAAGSGLPVARYPLTVWSEAGLPYLERVDLATGRAEELLRLPPEIREAWPSPDGARIALRSWRSHGDQW
RDDRVSVVDLTGNQVIGTTLQGGSLHWVGGRLVNRVPGGSAEGAWELWDPDTGEKTGGEPPLSALAAGMPEAVAFSPDGR
AAAYVGPAPGAGAGGAEPAPSPLVLVDLRTGTVRTIPGFVETGGPSGEGAALEVAWSPDGNRLAALEPVTGARGSRVVVY
DLERDARTTAAELPVHAWQARLAWSPRGDRLLAYGGGGGTWIIDPEGGDAVHVADSGHAQAFWDRTGERILAARGPWDGV
FVHTLADGTRVELGDGLPAGWAGDAVYIIRRPYAPCGLPLP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 63981; Mature: 63850

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMKSAKRAFVCAWLCLLLVAGCTLPLSAPVVQEAEPATDNVRQSGAPALPEERAGAPPR
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHCCCCHH
LVDRLVYRQTPVLTRVVDGITALRLEPWQQEVAVGSGPVELTWQLDTHDARPYRGLLRTE
HHHHHHHHCCHHHHHHHHCHHEEECCCCHHHHHCCCCCEEEEEEECCCCCCCHHHHHHCC
GAEPAQVRTVLGVIQARFEPPLPDRWTAWLEGVAGSHTQLVRHPEPTVVLGYRAADGTVV
CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEECCCCEEE
PLEGTEAILPAGPLRLLLEFDQAVDADSLTSWLSGVRQCTALPVALAQGTGDRWWIETEE
ECCCCCEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEECCC
APVRLYLDLRTVVAAGSGLPVARYPLTVWSEAGLPYLERVDLATGRAEELLRLPPEIREA
CCEEEEEEEEHHHHCCCCCCEEECCEEEECCCCCCHHHHHHCCCCCHHHHHHCCHHHHHH
WPSPDGARIALRSWRSHGDQWRDDRVSVVDLTGNQVIGTTLQGGSLHWVGGRLVNRVPGG
CCCCCCCEEHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEECCCCEEEECCHHHHCCCCC
SAEGAWELWDPDTGEKTGGEPPLSALAAGMPEAVAFSPDGRAAAYVGPAPGAGAGGAEPA
CCCCCEECCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCC
PSPLVLVDLRTGTVRTIPGFVETGGPSGEGAALEVAWSPDGNRLAALEPVTGARGSRVVV
CCCEEEEEECCCCEEECCCHHCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCEEEE
YDLERDARTTAAELPVHAWQARLAWSPRGDRLLAYGGGGGTWIIDPEGGDAVHVADSGHA
EECCCCCCCHHHHCCHHHHHEEEEECCCCCEEEEEECCCEEEEECCCCCCEEEEECCCCC
QAFWDRTGERILAARGPWDGVFVHTLADGTRVELGDGLPAGWAGDAVYIIRRPYAPCGLP
HHHHHCCCCEEEEECCCCCCEEEEEECCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCC
LP
CC
>Mature Secondary Structure 
AMKSAKRAFVCAWLCLLLVAGCTLPLSAPVVQEAEPATDNVRQSGAPALPEERAGAPPR
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHCCCCHH
LVDRLVYRQTPVLTRVVDGITALRLEPWQQEVAVGSGPVELTWQLDTHDARPYRGLLRTE
HHHHHHHHCCHHHHHHHHCHHEEECCCCHHHHHCCCCCEEEEEEECCCCCCCHHHHHHCC
GAEPAQVRTVLGVIQARFEPPLPDRWTAWLEGVAGSHTQLVRHPEPTVVLGYRAADGTVV
CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEECCCCEEE
PLEGTEAILPAGPLRLLLEFDQAVDADSLTSWLSGVRQCTALPVALAQGTGDRWWIETEE
ECCCCCEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEECCC
APVRLYLDLRTVVAAGSGLPVARYPLTVWSEAGLPYLERVDLATGRAEELLRLPPEIREA
CCEEEEEEEEHHHHCCCCCCEEECCEEEECCCCCCHHHHHHCCCCCHHHHHHCCHHHHHH
WPSPDGARIALRSWRSHGDQWRDDRVSVVDLTGNQVIGTTLQGGSLHWVGGRLVNRVPGG
CCCCCCCEEHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEECCCCEEEECCHHHHCCCCC
SAEGAWELWDPDTGEKTGGEPPLSALAAGMPEAVAFSPDGRAAAYVGPAPGAGAGGAEPA
CCCCCEECCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCC
PSPLVLVDLRTGTVRTIPGFVETGGPSGEGAALEVAWSPDGNRLAALEPVTGARGSRVVV
CCCEEEEEECCCCEEECCCHHCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCEEEE
YDLERDARTTAAELPVHAWQARLAWSPRGDRLLAYGGGGGTWIIDPEGGDAVHVADSGHA
EECCCCCCCHHHHCCHHHHHEEEEECCCCCEEEEEECCCEEEEECCCCCCEEEEECCCCC
QAFWDRTGERILAARGPWDGVFVHTLADGTRVELGDGLPAGWAGDAVYIIRRPYAPCGLP
HHHHHCCCCEEEEECCCCCCEEEEEECCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCC
LP
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA