| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is 51893620
Identifier: 51893620
GI number: 51893620
Start: 2664576
End: 2666384
Strand: Reverse
Name: 51893620
Synonym: STH2482
Alternate gene names: NA
Gene position: 2666384-2664576 (Counterclockwise)
Preceding gene: 51893621
Following gene: 51893619
Centisome position: 74.77
GC content: 74.3
Gene sequence:
>1809_bases ATGGCGATGAAGAGCGCGAAGCGGGCCTTCGTATGTGCGTGGCTCTGCCTGCTCCTTGTGGCAGGCTGCACCTTGCCGCT GTCCGCCCCGGTCGTGCAGGAGGCTGAACCGGCCACGGACAATGTGCGTCAGTCGGGCGCGCCCGCGCTCCCGGAGGAGC GTGCGGGCGCGCCGCCGCGCCTGGTCGACCGGCTGGTCTACCGGCAGACCCCCGTGCTGACCCGGGTCGTGGACGGCATC ACCGCCCTCCGCCTGGAGCCCTGGCAGCAGGAGGTGGCCGTCGGATCCGGCCCGGTGGAGCTGACCTGGCAGCTGGACAC CCACGACGCCAGGCCCTACCGCGGGCTGCTGCGCACCGAGGGGGCGGAGCCGGCCCAGGTGCGCACGGTGCTCGGCGTGA TCCAGGCCCGGTTTGAGCCGCCGCTGCCGGACCGGTGGACGGCATGGCTGGAGGGGGTCGCGGGCTCGCATACGCAGCTG GTCCGCCACCCGGAGCCGACGGTGGTCCTGGGCTACCGGGCGGCGGACGGTACGGTGGTTCCCCTGGAGGGGACCGAGGC GATCCTGCCTGCGGGGCCGCTCCGGCTGCTGCTGGAGTTTGACCAGGCGGTGGATGCGGACAGCCTGACTTCCTGGCTTT CCGGCGTGCGGCAGTGCACCGCCCTGCCCGTCGCGCTGGCCCAGGGGACCGGCGATCGCTGGTGGATCGAGACGGAGGAG GCGCCGGTCCGCCTTTACCTTGACCTGCGGACCGTTGTCGCGGCCGGGAGCGGGCTGCCTGTGGCCCGCTACCCCCTGAC GGTGTGGAGCGAGGCCGGGCTCCCTTACCTGGAGCGGGTGGACCTGGCGACGGGCAGGGCCGAGGAACTGCTCCGCCTGC CGCCGGAGATCCGCGAGGCCTGGCCTTCGCCCGACGGCGCCCGAATCGCCCTGCGGTCCTGGCGCAGCCACGGGGACCAG TGGCGGGACGACCGGGTGAGCGTGGTCGATCTGACCGGAAACCAGGTGATCGGCACAACGCTTCAGGGGGGCTCCCTCCA CTGGGTCGGCGGCCGGCTGGTCAACCGGGTGCCCGGGGGATCGGCGGAGGGGGCCTGGGAGCTCTGGGACCCCGACACGG GGGAGAAGACCGGCGGGGAGCCGCCGCTGTCGGCGTTGGCCGCCGGGATGCCGGAAGCCGTGGCTTTCTCGCCCGACGGA AGGGCCGCCGCCTACGTGGGGCCGGCCCCGGGTGCGGGCGCGGGCGGGGCCGAACCTGCCCCTTCCCCGCTGGTCCTGGT GGATCTGCGTACAGGCACGGTGCGCACCATCCCGGGGTTCGTCGAGACTGGCGGCCCGTCCGGGGAGGGCGCCGCGCTCG AGGTGGCCTGGAGCCCCGACGGGAACCGGCTTGCGGCGCTGGAACCCGTGACCGGGGCTCGGGGGAGCCGGGTCGTGGTC TACGACCTGGAGCGGGACGCGCGCACAACCGCCGCCGAGCTGCCGGTTCATGCCTGGCAGGCGCGGCTGGCCTGGAGTCC CCGGGGTGACCGGCTGCTGGCCTACGGCGGAGGGGGCGGGACCTGGATCATCGATCCGGAGGGCGGGGACGCCGTCCATG TGGCAGACTCAGGACACGCGCAGGCCTTCTGGGACCGGACAGGGGAACGGATCCTGGCGGCCAGGGGGCCCTGGGACGGG GTCTTCGTCCACACCCTCGCCGACGGCACCCGGGTGGAACTGGGGGATGGCCTGCCCGCCGGCTGGGCCGGAGACGCCGT GTACATCATCCGCCGGCCGTACGCCCCCTGCGGACTGCCCCTGCCCTGA
Upstream 100 bases:
>100_bases TCGATCTATTACTGCGACGGCTGCCGGCAGCCCTTCGAGCGGATGAAGCGGGTGTGAACCTCGGCCCGCTCTTCATCGTC AGACTTGTGACGGAAGGATG
Downstream 100 bases:
>100_bases CCCCCGACCGACACGGATCGAGGCGCCCCGCCGCGGCCATCGCCGGCGGGGCGCCCGCGTCCCTGCCGCCCAGGGATTTC CGGCCTCCCGCTCGGGACAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 602; Mature: 601
Protein sequence:
>602_residues MAMKSAKRAFVCAWLCLLLVAGCTLPLSAPVVQEAEPATDNVRQSGAPALPEERAGAPPRLVDRLVYRQTPVLTRVVDGI TALRLEPWQQEVAVGSGPVELTWQLDTHDARPYRGLLRTEGAEPAQVRTVLGVIQARFEPPLPDRWTAWLEGVAGSHTQL VRHPEPTVVLGYRAADGTVVPLEGTEAILPAGPLRLLLEFDQAVDADSLTSWLSGVRQCTALPVALAQGTGDRWWIETEE APVRLYLDLRTVVAAGSGLPVARYPLTVWSEAGLPYLERVDLATGRAEELLRLPPEIREAWPSPDGARIALRSWRSHGDQ WRDDRVSVVDLTGNQVIGTTLQGGSLHWVGGRLVNRVPGGSAEGAWELWDPDTGEKTGGEPPLSALAAGMPEAVAFSPDG RAAAYVGPAPGAGAGGAEPAPSPLVLVDLRTGTVRTIPGFVETGGPSGEGAALEVAWSPDGNRLAALEPVTGARGSRVVV YDLERDARTTAAELPVHAWQARLAWSPRGDRLLAYGGGGGTWIIDPEGGDAVHVADSGHAQAFWDRTGERILAARGPWDG VFVHTLADGTRVELGDGLPAGWAGDAVYIIRRPYAPCGLPLP
Sequences:
>Translated_602_residues MAMKSAKRAFVCAWLCLLLVAGCTLPLSAPVVQEAEPATDNVRQSGAPALPEERAGAPPRLVDRLVYRQTPVLTRVVDGI TALRLEPWQQEVAVGSGPVELTWQLDTHDARPYRGLLRTEGAEPAQVRTVLGVIQARFEPPLPDRWTAWLEGVAGSHTQL VRHPEPTVVLGYRAADGTVVPLEGTEAILPAGPLRLLLEFDQAVDADSLTSWLSGVRQCTALPVALAQGTGDRWWIETEE APVRLYLDLRTVVAAGSGLPVARYPLTVWSEAGLPYLERVDLATGRAEELLRLPPEIREAWPSPDGARIALRSWRSHGDQ WRDDRVSVVDLTGNQVIGTTLQGGSLHWVGGRLVNRVPGGSAEGAWELWDPDTGEKTGGEPPLSALAAGMPEAVAFSPDG RAAAYVGPAPGAGAGGAEPAPSPLVLVDLRTGTVRTIPGFVETGGPSGEGAALEVAWSPDGNRLAALEPVTGARGSRVVV YDLERDARTTAAELPVHAWQARLAWSPRGDRLLAYGGGGGTWIIDPEGGDAVHVADSGHAQAFWDRTGERILAARGPWDG VFVHTLADGTRVELGDGLPAGWAGDAVYIIRRPYAPCGLPLP >Mature_601_residues AMKSAKRAFVCAWLCLLLVAGCTLPLSAPVVQEAEPATDNVRQSGAPALPEERAGAPPRLVDRLVYRQTPVLTRVVDGIT ALRLEPWQQEVAVGSGPVELTWQLDTHDARPYRGLLRTEGAEPAQVRTVLGVIQARFEPPLPDRWTAWLEGVAGSHTQLV RHPEPTVVLGYRAADGTVVPLEGTEAILPAGPLRLLLEFDQAVDADSLTSWLSGVRQCTALPVALAQGTGDRWWIETEEA PVRLYLDLRTVVAAGSGLPVARYPLTVWSEAGLPYLERVDLATGRAEELLRLPPEIREAWPSPDGARIALRSWRSHGDQW RDDRVSVVDLTGNQVIGTTLQGGSLHWVGGRLVNRVPGGSAEGAWELWDPDTGEKTGGEPPLSALAAGMPEAVAFSPDGR AAAYVGPAPGAGAGGAEPAPSPLVLVDLRTGTVRTIPGFVETGGPSGEGAALEVAWSPDGNRLAALEPVTGARGSRVVVY DLERDARTTAAELPVHAWQARLAWSPRGDRLLAYGGGGGTWIIDPEGGDAVHVADSGHAQAFWDRTGERILAARGPWDGV FVHTLADGTRVELGDGLPAGWAGDAVYIIRRPYAPCGLPLP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63981; Mature: 63850
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAMKSAKRAFVCAWLCLLLVAGCTLPLSAPVVQEAEPATDNVRQSGAPALPEERAGAPPR CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHCCCCHH LVDRLVYRQTPVLTRVVDGITALRLEPWQQEVAVGSGPVELTWQLDTHDARPYRGLLRTE HHHHHHHHCCHHHHHHHHCHHEEECCCCHHHHHCCCCCEEEEEEECCCCCCCHHHHHHCC GAEPAQVRTVLGVIQARFEPPLPDRWTAWLEGVAGSHTQLVRHPEPTVVLGYRAADGTVV CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEECCCCEEE PLEGTEAILPAGPLRLLLEFDQAVDADSLTSWLSGVRQCTALPVALAQGTGDRWWIETEE ECCCCCEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEECCC APVRLYLDLRTVVAAGSGLPVARYPLTVWSEAGLPYLERVDLATGRAEELLRLPPEIREA CCEEEEEEEEHHHHCCCCCCEEECCEEEECCCCCCHHHHHHCCCCCHHHHHHCCHHHHHH WPSPDGARIALRSWRSHGDQWRDDRVSVVDLTGNQVIGTTLQGGSLHWVGGRLVNRVPGG CCCCCCCEEHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEECCCCEEEECCHHHHCCCCC SAEGAWELWDPDTGEKTGGEPPLSALAAGMPEAVAFSPDGRAAAYVGPAPGAGAGGAEPA CCCCCEECCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCC PSPLVLVDLRTGTVRTIPGFVETGGPSGEGAALEVAWSPDGNRLAALEPVTGARGSRVVV CCCEEEEEECCCCEEECCCHHCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCEEEE YDLERDARTTAAELPVHAWQARLAWSPRGDRLLAYGGGGGTWIIDPEGGDAVHVADSGHA EECCCCCCCHHHHCCHHHHHEEEEECCCCCEEEEEECCCEEEEECCCCCCEEEEECCCCC QAFWDRTGERILAARGPWDGVFVHTLADGTRVELGDGLPAGWAGDAVYIIRRPYAPCGLP HHHHHCCCCEEEEECCCCCCEEEEEECCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCC LP CC >Mature Secondary Structure AMKSAKRAFVCAWLCLLLVAGCTLPLSAPVVQEAEPATDNVRQSGAPALPEERAGAPPR CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHCCCCHH LVDRLVYRQTPVLTRVVDGITALRLEPWQQEVAVGSGPVELTWQLDTHDARPYRGLLRTE HHHHHHHHCCHHHHHHHHCHHEEECCCCHHHHHCCCCCEEEEEEECCCCCCCHHHHHHCC GAEPAQVRTVLGVIQARFEPPLPDRWTAWLEGVAGSHTQLVRHPEPTVVLGYRAADGTVV CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEECCCCEEE PLEGTEAILPAGPLRLLLEFDQAVDADSLTSWLSGVRQCTALPVALAQGTGDRWWIETEE ECCCCCEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEECCC APVRLYLDLRTVVAAGSGLPVARYPLTVWSEAGLPYLERVDLATGRAEELLRLPPEIREA CCEEEEEEEEHHHHCCCCCCEEECCEEEECCCCCCHHHHHHCCCCCHHHHHHCCHHHHHH WPSPDGARIALRSWRSHGDQWRDDRVSVVDLTGNQVIGTTLQGGSLHWVGGRLVNRVPGG CCCCCCCEEHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEECCCCEEEECCHHHHCCCCC SAEGAWELWDPDTGEKTGGEPPLSALAAGMPEAVAFSPDGRAAAYVGPAPGAGAGGAEPA CCCCCEECCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCC PSPLVLVDLRTGTVRTIPGFVETGGPSGEGAALEVAWSPDGNRLAALEPVTGARGSRVVV CCCEEEEEECCCCEEECCCHHCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCEEEE YDLERDARTTAAELPVHAWQARLAWSPRGDRLLAYGGGGGTWIIDPEGGDAVHVADSGHA EECCCCCCCHHHHCCHHHHHEEEEECCCCCEEEEEECCCEEEEECCCCCCEEEEECCCCC QAFWDRTGERILAARGPWDGVFVHTLADGTRVELGDGLPAGWAGDAVYIIRRPYAPCGLP HHHHHCCCCEEEEECCCCCCEEEEEECCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCC LP CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA