| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is braD [H]
Identifier: 51893498
GI number: 51893498
Start: 2549576
End: 2551435
Strand: Reverse
Name: braD [H]
Synonym: STH2360
Alternate gene names: 51893498
Gene position: 2551435-2549576 (Counterclockwise)
Preceding gene: 51893499
Following gene: 51893497
Centisome position: 71.55
GC content: 71.83
Gene sequence:
>1860_bases GTGGCGGCGCCTTTGCGATCTGGAACCCGTAGGAGGGGGAGCATGCTGGACCAGCTGATCAACGGCCTGGTGGTTGGCAA CCTCTACGCCCTCACGGCGGTGGGCATCACCCAGATCTACGGCGTGGCCAACGTGATCAACTTCGCCCACGGCTCCCTCT ACATGGTCGGCGCCTTCGTGGGCTGGATGGCGGTCACCTGGCTGGGCCTGCCGCTACTGCCCACCCTGCTGCTCGTGCTC GTCGCCTCGGCCCTGCTGGGGCTGGCGGTGGAGCGGGTCGCCATCCGCCCCTTCGCCGGTTCTGGCCGGACGGTGCTGCT GCTCACCACCATCGCCGCGGGGCTCGTCCTGGAGCAGGCGGCCCAGCTGATATGGGGGCCGGAGACCAAGGCCTTCCACA CCCCCTTCGCCGACGTGCGGGTCCGGGTGGGCGGCGGCTTCCTCTCCTCCCTGGACCTGGTGATCCTGGCTGTGGGCTTG ACCACCGCTCTGGCGCTCTGGCTCTTCCTGAAGCGGTCCCGCCTGGGCTGGGCGGTCCGGGCCACCGCCCAGGACCGGGA GGCCGCCCTGCAGATGGGCGTCGACGTGAACCAGGTCAGCCGGGTCAGCTTCGCCATGGCCGGCGCCCTGGCCGGGGTGA GCGGGCTCCTGGTGGGGCTGTACTACCACAGCGTCTACCCCACCATGGGCTTCTCCGCGAGCCTGAAGGGATTCACGGCG GCCCTGCTGGGCGGATTGGGCAACATCCCCGGCGCGCTGGTGGGGGCGTACCTGCTGGGAACGGCGGAGTCGCTGGCGGT GGCCTGGCTGGGCTCCACCTGGCGCGACCTGGTGGGCATCGGACTGCTGCTCGGCGTGCTGCTTTTCCGCCCCAACGGCC TGTTCGCGGCCGCCCGGGCGCTGCTGCCCGAGCCCACTGCCGGCACTTTCATCCCGATCGGGCGGCCGCTGCCTATCCCC CGGTGGGCGCTGCCCGCGGCGGGGGCCGTCGCCCTGGCCCTGCCGCTGGTGGTGCGGAACGGGTACTGGCTGCAGGTGCT GGCGACCGCCTGGATCTTCGGCCTGCTGGCCATCAGCCTCAACCTGATTGCCGGGACGGCCGGGCAGATCTCCCTCGGGC ACGCCGGCTTCCTGGCCCTGGGGGCGTACGCCTCGGCCATCCTCACCACCCGGCTGCAGTGGCCCTTCCTGCTGTCGCTG GCTGTCGCGCCCGTCATCGCCGCCGCCGTCGGCGTGGTGCTTTGCTACCCGGCCCTGCGGCTCCGGGGGCAGTACCTGGC GGTGGCCACCATCGGCCTGGGCCAGGGGATCGCGCTGGTGGCGCTCAACTGGACGGCACTGACCCGGGGGCCCCTGGGCA TCAGCAACATCGCCCCGCCTGGCCTCTTCGGAGTGGAGATCACCTCGGCCGCGGGGTTCTACTGGCTGACCCTGACCCTG CTGCTGGGCGGCATCTGGGTGGCGGAGCGGCTCTCCGGCTCGTACCTGGGCCGGGCGCTGCGGGCCGTGCGGGAGGACGA GGTGGCCGCCCGGGCGTACGGGGTGGGGCTGGAGCGGTACAAGTCCATCGCCTTCGGCCTCAGCGCCTTCATCGCGGGCC TCGCCGGCGTCCTGCTGGCGCACGCCTACACCTACATCGCGCCGGACACGTTCACCCACGCGATGTCGCTGCAGGTGCTG ACGATGGTGGTGCTGGGCGGGCTGGACAACACCATCGGCGCCGTGGCGGGGGCCCTCGCCCTGATCGTCATCCCCGAGTC CGCCCGGTTCCTGGCGGAGTACCGGTTCCTGGTCTACGGCCTGCTGCTTCTGGTCATGCTCAGGTTCCGGCCCCGGGGCC TCCTGAGCGCCGCATCGTGA
Upstream 100 bases:
>100_bases CTGGAGCAGGCCGAGCACCTGGAGACCATCCTGCAGGGCGCCACCGCCTTCGGCGAGGACCGGCGGCTCCGCAACCCCCG CTTCGTACCGCTGGTGGTCC
Downstream 100 bases:
>100_bases GGAGGTGAACCCCCGTGCAGGTCCTTTCGGTCCGGAACCTGGCCAAGCGCTTCGGCGGCCTCGACGCCGTGCGGTCCGTG AGCCTGGACGTCGGGCCGGG
Product: ABC transporter permease protein
Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 619; Mature: 618
Protein sequence:
>619_residues MAAPLRSGTRRRGSMLDQLINGLVVGNLYALTAVGITQIYGVANVINFAHGSLYMVGAFVGWMAVTWLGLPLLPTLLLVL VASALLGLAVERVAIRPFAGSGRTVLLLTTIAAGLVLEQAAQLIWGPETKAFHTPFADVRVRVGGGFLSSLDLVILAVGL TTALALWLFLKRSRLGWAVRATAQDREAALQMGVDVNQVSRVSFAMAGALAGVSGLLVGLYYHSVYPTMGFSASLKGFTA ALLGGLGNIPGALVGAYLLGTAESLAVAWLGSTWRDLVGIGLLLGVLLFRPNGLFAAARALLPEPTAGTFIPIGRPLPIP RWALPAAGAVALALPLVVRNGYWLQVLATAWIFGLLAISLNLIAGTAGQISLGHAGFLALGAYASAILTTRLQWPFLLSL AVAPVIAAAVGVVLCYPALRLRGQYLAVATIGLGQGIALVALNWTALTRGPLGISNIAPPGLFGVEITSAAGFYWLTLTL LLGGIWVAERLSGSYLGRALRAVREDEVAARAYGVGLERYKSIAFGLSAFIAGLAGVLLAHAYTYIAPDTFTHAMSLQVL TMVVLGGLDNTIGAVAGALALIVIPESARFLAEYRFLVYGLLLLVMLRFRPRGLLSAAS
Sequences:
>Translated_619_residues MAAPLRSGTRRRGSMLDQLINGLVVGNLYALTAVGITQIYGVANVINFAHGSLYMVGAFVGWMAVTWLGLPLLPTLLLVL VASALLGLAVERVAIRPFAGSGRTVLLLTTIAAGLVLEQAAQLIWGPETKAFHTPFADVRVRVGGGFLSSLDLVILAVGL TTALALWLFLKRSRLGWAVRATAQDREAALQMGVDVNQVSRVSFAMAGALAGVSGLLVGLYYHSVYPTMGFSASLKGFTA ALLGGLGNIPGALVGAYLLGTAESLAVAWLGSTWRDLVGIGLLLGVLLFRPNGLFAAARALLPEPTAGTFIPIGRPLPIP RWALPAAGAVALALPLVVRNGYWLQVLATAWIFGLLAISLNLIAGTAGQISLGHAGFLALGAYASAILTTRLQWPFLLSL AVAPVIAAAVGVVLCYPALRLRGQYLAVATIGLGQGIALVALNWTALTRGPLGISNIAPPGLFGVEITSAAGFYWLTLTL LLGGIWVAERLSGSYLGRALRAVREDEVAARAYGVGLERYKSIAFGLSAFIAGLAGVLLAHAYTYIAPDTFTHAMSLQVL TMVVLGGLDNTIGAVAGALALIVIPESARFLAEYRFLVYGLLLLVMLRFRPRGLLSAAS >Mature_618_residues AAPLRSGTRRRGSMLDQLINGLVVGNLYALTAVGITQIYGVANVINFAHGSLYMVGAFVGWMAVTWLGLPLLPTLLLVLV ASALLGLAVERVAIRPFAGSGRTVLLLTTIAAGLVLEQAAQLIWGPETKAFHTPFADVRVRVGGGFLSSLDLVILAVGLT TALALWLFLKRSRLGWAVRATAQDREAALQMGVDVNQVSRVSFAMAGALAGVSGLLVGLYYHSVYPTMGFSASLKGFTAA LLGGLGNIPGALVGAYLLGTAESLAVAWLGSTWRDLVGIGLLLGVLLFRPNGLFAAARALLPEPTAGTFIPIGRPLPIPR WALPAAGAVALALPLVVRNGYWLQVLATAWIFGLLAISLNLIAGTAGQISLGHAGFLALGAYASAILTTRLQWPFLLSLA VAPVIAAAVGVVLCYPALRLRGQYLAVATIGLGQGIALVALNWTALTRGPLGISNIAPPGLFGVEITSAAGFYWLTLTLL LGGIWVAERLSGSYLGRALRAVREDEVAARAYGVGLERYKSIAFGLSAFIAGLAGVLLAHAYTYIAPDTFTHAMSLQVLT MVVLGGLDNTIGAVAGALALIVIPESARFLAEYRFLVYGLLLLVMLRFRPRGLLSAAS
Specific function: Component of the high affinity leucine, isoleucine, valine, transport system (LIV-I), which is operative without Na(+) and is specific for alanine and threonine, in addition to branched-chain amino acids [H]
COG id: COG0559
COG function: function code E; Branched-chain amino acid ABC-type transport system, permease components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the binding-protein-dependent transport system permease family. LivHM subfamily [H]
Homologues:
Organism=Escherichia coli, GI1789866, Length=293, Percent_Identity=37.542662116041, Blast_Score=170, Evalue=3e-43, Organism=Escherichia coli, GI1789865, Length=304, Percent_Identity=37.171052631579, Blast_Score=164, Evalue=1e-41,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001851 [H]
Pfam domain/function: PF02653 BPD_transp_2 [H]
EC number: NA
Molecular weight: Translated: 64649; Mature: 64517
Theoretical pI: Translated: 10.48; Mature: 10.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAPLRSGTRRRGSMLDQLINGLVVGNLYALTAVGITQIYGVANVINFAHGSLYMVGAFV CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH GWMAVTWLGLPLLPTLLLVLVASALLGLAVERVAIRPFAGSGRTVLLLTTIAAGLVLEQA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHH AQLIWGPETKAFHTPFADVRVRVGGGFLSSLDLVILAVGLTTALALWLFLKRSRLGWAVR HHHHCCCCCCCCCCCHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE ATAQDREAALQMGVDVNQVSRVSFAMAGALAGVSGLLVGLYYHSVYPTMGFSASLKGFTA ECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH ALLGGLGNIPGALVGAYLLGTAESLAVAWLGSTWRDLVGIGLLLGVLLFRPNGLFAAARA HHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH LLPEPTAGTFIPIGRPLPIPRWALPAAGAVALALPLVVRNGYWLQVLATAWIFGLLAISL HCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH NLIAGTAGQISLGHAGFLALGAYASAILTTRLQWPFLLSLAVAPVIAAAVGVVLCYPALR HHHCCCCCCEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LRGQYLAVATIGLGQGIALVALNWTALTRGPLGISNIAPPGLFGVEITSAAGFYWLTLTL HCCCEEEEEEEECCCCEEEEEEEEHHEECCCCCCCCCCCCCCCCEEECCCCHHHHHHHHH LLGGIWVAERLSGSYLGRALRAVREDEVAARAYGVGLERYKSIAFGLSAFIAGLAGVLLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH HAYTYIAPDTFTHAMSLQVLTMVVLGGLDNTIGAVAGALALIVIPESARFLAEYRFLVYG HHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEEECCCHHHHHHHHHHHHH LLLLVMLRFRPRGLLSAAS HHHHHHHHCCCCCCCCCCC >Mature Secondary Structure AAPLRSGTRRRGSMLDQLINGLVVGNLYALTAVGITQIYGVANVINFAHGSLYMVGAFV CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH GWMAVTWLGLPLLPTLLLVLVASALLGLAVERVAIRPFAGSGRTVLLLTTIAAGLVLEQA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHH AQLIWGPETKAFHTPFADVRVRVGGGFLSSLDLVILAVGLTTALALWLFLKRSRLGWAVR HHHHCCCCCCCCCCCHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE ATAQDREAALQMGVDVNQVSRVSFAMAGALAGVSGLLVGLYYHSVYPTMGFSASLKGFTA ECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH ALLGGLGNIPGALVGAYLLGTAESLAVAWLGSTWRDLVGIGLLLGVLLFRPNGLFAAARA HHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH LLPEPTAGTFIPIGRPLPIPRWALPAAGAVALALPLVVRNGYWLQVLATAWIFGLLAISL HCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH NLIAGTAGQISLGHAGFLALGAYASAILTTRLQWPFLLSLAVAPVIAAAVGVVLCYPALR HHHCCCCCCEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LRGQYLAVATIGLGQGIALVALNWTALTRGPLGISNIAPPGLFGVEITSAAGFYWLTLTL HCCCEEEEEEEECCCCEEEEEEEEHHEECCCCCCCCCCCCCCCCEEECCCCHHHHHHHHH LLGGIWVAERLSGSYLGRALRAVREDEVAARAYGVGLERYKSIAFGLSAFIAGLAGVLLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH HAYTYIAPDTFTHAMSLQVLTMVVLGGLDNTIGAVAGALALIVIPESARFLAEYRFLVYG HHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEEECCCHHHHHHHHHHHHH LLLLVMLRFRPRGLLSAAS HHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]
Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2120183; 10984043; 2509433 [H]