| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
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The map label for this gene is 51893408
Identifier: 51893408
GI number: 51893408
Start: 2439144
End: 2441930
Strand: Reverse
Name: 51893408
Synonym: STH2270
Alternate gene names: NA
Gene position: 2441930-2439144 (Counterclockwise)
Preceding gene: 51893414
Following gene: 51893407
Centisome position: 68.48
GC content: 60.06
Gene sequence:
>2787_bases GTGGTGAGTGTACGGCGCTTTCTGGCAGCCCTGACCGCGGCCGTGATGCTGGCGGTCAGCGGCACCCCGACACTGGCTGG GCCGAAACCGGCTCCGACCAACGGTTACTGGGAACCCAACAACCCGGCGTTTGCCCAGGTAGTTCCCCGCATCTATGGGG CATCACAACTCCCCGAGCTGAACGGATACGGCCAGACCATCGGCATCATCGGGATCTACCACGATTATGCTGAGGATGCC AAGGCGGATCTGGCCAAGGCCATTGAGGTGCTGGATCTGGCCCCCATGTACGGCCTGCCGGGGACGGAACCCTGCACCAT CGAAAACGGTCCCTGGCCTTGTTTTGAAGTGAAACTGGTGGAATCCGACCCGCGCAAGCCGCCGCTGTTTGCAGGGTCAT GTTCGATCTACTATGAGATGGCCCTGGATGTCCAAGCGGCCCACAAGATGGCTCCGGGTGCCAACATCCGGCTATATCTG GGTGAAACCCCGGATGTCTTTGACCTTTTCTACACGCTCCGCCGTGCTCTAGAAGACGACGTTCTTTCGGTGATTTCGCT GAGTTTCTCGACCAGTGAGGAGAACATCCTCACCAATCCTTACCTTGGCGAGGAGTTCCTCCGGGAATACAGCGAGGTGC TGGATCGGGCCAAAACCCTGATCGTGGCTGCTTCCGGTGACTGGGGAGATCGCCTGGAATTCCCGTCCACCCACCCCAAT GTGCTGGCGGTCGGTGGCACCACGTTCAAGCAGGAAGATCGTTCGTTCACGCCGTGGAACCCAGAGAGTGAACGGGCGTG GTCAACCTATGAACCGGGCCATTTGGTAGGTTCGGCCGGAGGGCCAAGCATGGTATTTGCCCGCCCCAGCTACCAAGATG GGTTCCATGATCTGCCGTTCCGTACCACTCCGGACATCGCCCTCAACGCCGATGGCCAACCCACGTTCACGTCCAACCAC TGGATTGATGCCGGGGCCACCTCGGTTGCCGCACCGATGATCGCCGGAGTTATCGCCCGCGCCAACCAAGCCCGTACGCA GATGGGGCTGCCCAAGATCAGCCATCCGGCAGAAATCTACGCGCTGGCCACAGGAGAGGGGTATCGCGAGAACTTCCGCG ACATCACACAGGGGCTTGGCGCATGCGTTTCGGAAACGTGTGCCGCCGGGCCGGGGTATGATTTTGCGACGGGGCTTGGC GTCCCGCGTATCGAGCGCTTTGTTCCGAATGCCGCCGGGATGACCCCCATCGACATCGCGGATCTCACCGTGTCGGCGGT AACAGAAGAGAGCATCCAGATTTCGTTCACAACAAACGTCCCCACAGAAGGGTTTATCTGCTATACCAATGCGCCCGAAC GGGACAACCTCGCCCTGCCGCTGGGAAGCGGGATGAACAAGGTGTGCGTCAGTGACGGCCAGTTTGGCACCCGCCATACG GTCACCATCAGCGGTCTTGCGGACAACACCCGCTACTCGATCTGGGCCGGGGCGAAATCCGCAGAGTACACCCGCCACGT CGAAGTCGGCAACATCACCACCCGCCCGCGCCTGACCGAAGTGGGGCTGACCGCCGCAGATGCGGTGGAACTGGAAGACG GCAAGACCTATCATCAGATGCTGGAACCGCACCAGAACCACTACTACCGCTTCAGCTTGAACGAGGGCGACAAGGTGGAT TTCCGCCGCACGACCACTGGGCAGATCACCTTCTACCTCCAAGATGCTGAAACAGGTAAGCTGGTGGATCTCATCGGGCC GTCCAAGCACTTTGATAAACCCGGAAGCTACATCATCCGGGTCAGCAGCTACAGCGATCCGGTGCAGTACTCCCTGAAAG CGGATTTCACACGGGCCGATGAAGTAGTGCCCGAACCCGAACCGCCCACCCCCACGGTGCCGCACTACTCGCTGGAAACG GCACTGGTGCTCGAAGACGGCAAGACCTACACCTACTCCATCGGCCAGGGCGAAAGCCACTACTACAAGTTCGAAACCAA GCCTGGCGATATGCTGATCTTCAAGCGGTCAGGTACCGGACCGATCACGGTCTACCTGATGAACGCCCGCACGGGCAAAA TTCTGGACACCATGGGCACGCTGAAAAGCGTGAAGTTTGAAGGGGCAGGGACCTACGCGTTCTGGTTCGTCGGCAATCCC ACCCGACCAGAGTACACCTTCTCGGTGCGCTTCACACACAGCGGCGACAAGACCGAAGGCATCGTCATGACGGTTCCGGC CGACCCGGAAAGCACGGCCCCCATCGCTGAACCGGATACGGATACGCCGGATGAAGAGCTTGCGCCCCCAGAAGCGGAAT CCGTTGAAGTCCCCGAACAAGACGACAGTGATTCGGCCGTGGAACCCATTGTGGTCACCCCGATTGAGCGGCCCATCCCT GCGCGGGGAGTGGAGAAAAGCACCGCCCTGGATCTGGAGTTCGGCAAAACCTATCAGGTTCGGATGCGTGCGGGTGAGAC GCACAGCTATCGGTTTGTAGCGCAGAAGGGAGATACAGCCGGATTTACGGTGAGCAGCGACGCCCCTGTGTCCCTTTACC TCTTGGATGCTTCCGGGCGGCTTCTGGCCGATGTTGGAGCCAACCGCATCTATGCATTCACCGCCGAGGGAGAGTACAAG CTTCAGGTGGTGGCCGACCAGCCGCTCACCTATACCCTGCGCGTGGATATCGTGCGTCCAGCACCGAAGCCTGTCCCACC CGTGAAGCAACTCCTGCCGAATCCCTCCGATAACCTGATACCCAAGCCCACTCCGATTACACGATAA
Upstream 100 bases:
>100_bases ACCACATAAGGCCAAGACGGAATGGGGGTGGAATCACAGAAGCGAAGAGTCTTCCGCTGTCACCACGAACTCTAAAATCC GAAGAAAAAGGAGGACGATT
Downstream 100 bases:
>100_bases TGTTATTCTGCGGCCCTTGGCATACTCTGCCGAGGGCCGTTTGACATGGGTTTGGGACGCAGCGGGACACAGAGAGCGCC GAAACGAAGGGGGAGGGAGC
Product: hypothetical protein
Products: NA
Alternate protein names: Peptidase S8/S53 Subtilisin Kexin Sedolisin; Peptidase S8 And; Protease-Like Protein; Peptidase S8 And S; Physarolisin II; Serine-Carboxyl Peptidase; Kumamolisin; Pseudomonapepsin; Membrane Associated Serine Protease; Serine Protease Kumamolysin; Ig Family Protein; Serine Protease; Lipoprotein; Serine Protease Subtilase Family; Subtilase Family Serine Protease; Xanthomonapepsin Related Protein; Conserved Hypothethical Protein Peptidase S8 And; Protease; Neutral Zinc Metalloprotease
Number of amino acids: Translated: 928; Mature: 928
Protein sequence:
>928_residues MVSVRRFLAALTAAVMLAVSGTPTLAGPKPAPTNGYWEPNNPAFAQVVPRIYGASQLPELNGYGQTIGIIGIYHDYAEDA KADLAKAIEVLDLAPMYGLPGTEPCTIENGPWPCFEVKLVESDPRKPPLFAGSCSIYYEMALDVQAAHKMAPGANIRLYL GETPDVFDLFYTLRRALEDDVLSVISLSFSTSEENILTNPYLGEEFLREYSEVLDRAKTLIVAASGDWGDRLEFPSTHPN VLAVGGTTFKQEDRSFTPWNPESERAWSTYEPGHLVGSAGGPSMVFARPSYQDGFHDLPFRTTPDIALNADGQPTFTSNH WIDAGATSVAAPMIAGVIARANQARTQMGLPKISHPAEIYALATGEGYRENFRDITQGLGACVSETCAAGPGYDFATGLG VPRIERFVPNAAGMTPIDIADLTVSAVTEESIQISFTTNVPTEGFICYTNAPERDNLALPLGSGMNKVCVSDGQFGTRHT VTISGLADNTRYSIWAGAKSAEYTRHVEVGNITTRPRLTEVGLTAADAVELEDGKTYHQMLEPHQNHYYRFSLNEGDKVD FRRTTTGQITFYLQDAETGKLVDLIGPSKHFDKPGSYIIRVSSYSDPVQYSLKADFTRADEVVPEPEPPTPTVPHYSLET ALVLEDGKTYTYSIGQGESHYYKFETKPGDMLIFKRSGTGPITVYLMNARTGKILDTMGTLKSVKFEGAGTYAFWFVGNP TRPEYTFSVRFTHSGDKTEGIVMTVPADPESTAPIAEPDTDTPDEELAPPEAESVEVPEQDDSDSAVEPIVVTPIERPIP ARGVEKSTALDLEFGKTYQVRMRAGETHSYRFVAQKGDTAGFTVSSDAPVSLYLLDASGRLLADVGANRIYAFTAEGEYK LQVVADQPLTYTLRVDIVRPAPKPVPPVKQLLPNPSDNLIPKPTPITR
Sequences:
>Translated_928_residues MVSVRRFLAALTAAVMLAVSGTPTLAGPKPAPTNGYWEPNNPAFAQVVPRIYGASQLPELNGYGQTIGIIGIYHDYAEDA KADLAKAIEVLDLAPMYGLPGTEPCTIENGPWPCFEVKLVESDPRKPPLFAGSCSIYYEMALDVQAAHKMAPGANIRLYL GETPDVFDLFYTLRRALEDDVLSVISLSFSTSEENILTNPYLGEEFLREYSEVLDRAKTLIVAASGDWGDRLEFPSTHPN VLAVGGTTFKQEDRSFTPWNPESERAWSTYEPGHLVGSAGGPSMVFARPSYQDGFHDLPFRTTPDIALNADGQPTFTSNH WIDAGATSVAAPMIAGVIARANQARTQMGLPKISHPAEIYALATGEGYRENFRDITQGLGACVSETCAAGPGYDFATGLG VPRIERFVPNAAGMTPIDIADLTVSAVTEESIQISFTTNVPTEGFICYTNAPERDNLALPLGSGMNKVCVSDGQFGTRHT VTISGLADNTRYSIWAGAKSAEYTRHVEVGNITTRPRLTEVGLTAADAVELEDGKTYHQMLEPHQNHYYRFSLNEGDKVD FRRTTTGQITFYLQDAETGKLVDLIGPSKHFDKPGSYIIRVSSYSDPVQYSLKADFTRADEVVPEPEPPTPTVPHYSLET ALVLEDGKTYTYSIGQGESHYYKFETKPGDMLIFKRSGTGPITVYLMNARTGKILDTMGTLKSVKFEGAGTYAFWFVGNP TRPEYTFSVRFTHSGDKTEGIVMTVPADPESTAPIAEPDTDTPDEELAPPEAESVEVPEQDDSDSAVEPIVVTPIERPIP ARGVEKSTALDLEFGKTYQVRMRAGETHSYRFVAQKGDTAGFTVSSDAPVSLYLLDASGRLLADVGANRIYAFTAEGEYK LQVVADQPLTYTLRVDIVRPAPKPVPPVKQLLPNPSDNLIPKPTPITR >Mature_928_residues MVSVRRFLAALTAAVMLAVSGTPTLAGPKPAPTNGYWEPNNPAFAQVVPRIYGASQLPELNGYGQTIGIIGIYHDYAEDA KADLAKAIEVLDLAPMYGLPGTEPCTIENGPWPCFEVKLVESDPRKPPLFAGSCSIYYEMALDVQAAHKMAPGANIRLYL GETPDVFDLFYTLRRALEDDVLSVISLSFSTSEENILTNPYLGEEFLREYSEVLDRAKTLIVAASGDWGDRLEFPSTHPN VLAVGGTTFKQEDRSFTPWNPESERAWSTYEPGHLVGSAGGPSMVFARPSYQDGFHDLPFRTTPDIALNADGQPTFTSNH WIDAGATSVAAPMIAGVIARANQARTQMGLPKISHPAEIYALATGEGYRENFRDITQGLGACVSETCAAGPGYDFATGLG VPRIERFVPNAAGMTPIDIADLTVSAVTEESIQISFTTNVPTEGFICYTNAPERDNLALPLGSGMNKVCVSDGQFGTRHT VTISGLADNTRYSIWAGAKSAEYTRHVEVGNITTRPRLTEVGLTAADAVELEDGKTYHQMLEPHQNHYYRFSLNEGDKVD FRRTTTGQITFYLQDAETGKLVDLIGPSKHFDKPGSYIIRVSSYSDPVQYSLKADFTRADEVVPEPEPPTPTVPHYSLET ALVLEDGKTYTYSIGQGESHYYKFETKPGDMLIFKRSGTGPITVYLMNARTGKILDTMGTLKSVKFEGAGTYAFWFVGNP TRPEYTFSVRFTHSGDKTEGIVMTVPADPESTAPIAEPDTDTPDEELAPPEAESVEVPEQDDSDSAVEPIVVTPIERPIP ARGVEKSTALDLEFGKTYQVRMRAGETHSYRFVAQKGDTAGFTVSSDAPVSLYLLDASGRLLADVGANRIYAFTAEGEYK LQVVADQPLTYTLRVDIVRPAPKPVPPVKQLLPNPSDNLIPKPTPITR
Specific function: Unknown
COG id: COG4934
COG function: function code O; Predicted protease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 101139; Mature: 101139
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSVRRFLAALTAAVMLAVSGTPTLAGPKPAPTNGYWEPNNPAFAQVVPRIYGASQLPEL CCHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC NGYGQTIGIIGIYHDYAEDAKADLAKAIEVLDLAPMYGLPGTEPCTIENGPWPCFEVKLV CCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCEEEEEEE ESDPRKPPLFAGSCSIYYEMALDVQAAHKMAPGANIRLYLGETPDVFDLFYTLRRALEDD CCCCCCCCEEECCCEEEEEEEECHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH VLSVISLSFSTSEENILTNPYLGEEFLREYSEVLDRAKTLIVAASGDWGDRLEFPSTHPN HHHHHEEEECCCCCCEECCCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCC VLAVGGTTFKQEDRSFTPWNPESERAWSTYEPGHLVGSAGGPSMVFARPSYQDGFHDLPF EEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCC RTTPDIALNADGQPTFTSNHWIDAGATSVAAPMIAGVIARANQARTQMGLPKISHPAEIY CCCCCEEEECCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE ALATGEGYRENFRDITQGLGACVSETCAAGPGYDFATGLGVPRIERFVPNAAGMTPIDIA EEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCCCEEEHH DLTVSAVTEESIQISFTTNVPTEGFICYTNAPERDNLALPLGSGMNKVCVSDGQFGTRHT HEEEEEEECCEEEEEEEECCCCCCEEEECCCCCCCCEEEECCCCCCEEEECCCCCCCEEE VTISGLADNTRYSIWAGAKSAEYTRHVEVGNITTRPRLTEVGLTAADAVELEDGKTYHQM EEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCCCCEEECCCCEECEEEECCCCHHHHH LEPHQNHYYRFSLNEGDKVDFRRTTTGQITFYLQDAETGKLVDLIGPSKHFDKPGSYIIR HCCCCCCEEEEECCCCCCEEEEEECCCEEEEEEECCCCCCEEEECCCCCCCCCCCCEEEE VSSYSDPVQYSLKADFTRADEVVPEPEPPTPTVPHYSLETALVLEDGKTYTYSIGQGESH ECCCCCCEEEEEEECCCCHHCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCE YYKFETKPGDMLIFKRSGTGPITVYLMNARTGKILDTMGTLKSVKFEGAGTYAFWFVGNP EEEEECCCCCEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHEEECCCCEEEEEEECCC TRPEYTFSVRFTHSGDKTEGIVMTVPADPESTAPIAEPDTDTPDEELAPPEAESVEVPEQ CCCCEEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCC DDSDSAVEPIVVTPIERPIPARGVEKSTALDLEFGKTYQVRMRAGETHSYRFVAQKGDTA CCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCEEEEEEECCCCC GFTVSSDAPVSLYLLDASGRLLADVGANRIYAFTAEGEYKLQVVADQPLTYTLRVDIVRP CEEECCCCCEEEEEECCCCCEEEECCCCEEEEEEECCCEEEEEEECCCEEEEEEEEEECC APKPVPPVKQLLPNPSDNLIPKPTPITR CCCCCCHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure MVSVRRFLAALTAAVMLAVSGTPTLAGPKPAPTNGYWEPNNPAFAQVVPRIYGASQLPEL CCHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC NGYGQTIGIIGIYHDYAEDAKADLAKAIEVLDLAPMYGLPGTEPCTIENGPWPCFEVKLV CCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCEEEEEEE ESDPRKPPLFAGSCSIYYEMALDVQAAHKMAPGANIRLYLGETPDVFDLFYTLRRALEDD CCCCCCCCEEECCCEEEEEEEECHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH VLSVISLSFSTSEENILTNPYLGEEFLREYSEVLDRAKTLIVAASGDWGDRLEFPSTHPN HHHHHEEEECCCCCCEECCCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCC VLAVGGTTFKQEDRSFTPWNPESERAWSTYEPGHLVGSAGGPSMVFARPSYQDGFHDLPF EEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCC RTTPDIALNADGQPTFTSNHWIDAGATSVAAPMIAGVIARANQARTQMGLPKISHPAEIY CCCCCEEEECCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE ALATGEGYRENFRDITQGLGACVSETCAAGPGYDFATGLGVPRIERFVPNAAGMTPIDIA EEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHCCCCCCCCEEEHH DLTVSAVTEESIQISFTTNVPTEGFICYTNAPERDNLALPLGSGMNKVCVSDGQFGTRHT HEEEEEEECCEEEEEEEECCCCCCEEEECCCCCCCCEEEECCCCCCEEEECCCCCCCEEE VTISGLADNTRYSIWAGAKSAEYTRHVEVGNITTRPRLTEVGLTAADAVELEDGKTYHQM EEEEECCCCCEEEEEECCCCCCCEEEEEECCCCCCCCEEECCCCEECEEEECCCCHHHHH LEPHQNHYYRFSLNEGDKVDFRRTTTGQITFYLQDAETGKLVDLIGPSKHFDKPGSYIIR HCCCCCCEEEEECCCCCCEEEEEECCCEEEEEEECCCCCCEEEECCCCCCCCCCCCEEEE VSSYSDPVQYSLKADFTRADEVVPEPEPPTPTVPHYSLETALVLEDGKTYTYSIGQGESH ECCCCCCEEEEEEECCCCHHCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCE YYKFETKPGDMLIFKRSGTGPITVYLMNARTGKILDTMGTLKSVKFEGAGTYAFWFVGNP EEEEECCCCCEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHEEECCCCEEEEEEECCC TRPEYTFSVRFTHSGDKTEGIVMTVPADPESTAPIAEPDTDTPDEELAPPEAESVEVPEQ CCCCEEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCC DDSDSAVEPIVVTPIERPIPARGVEKSTALDLEFGKTYQVRMRAGETHSYRFVAQKGDTA CCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCEEEEEEECCCCC GFTVSSDAPVSLYLLDASGRLLADVGANRIYAFTAEGEYKLQVVADQPLTYTLRVDIVRP CEEECCCCCEEEEEECCCCCEEEECCCCEEEEEEECCCEEEEEEECCCEEEEEEEEEECC APKPVPPVKQLLPNPSDNLIPKPTPITR CCCCCCHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA