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The map label for this gene is dmsB [H]

Identifier: 51893193

GI number: 51893193

Start: 2192587

End: 2193237

Strand: Reverse

Name: dmsB [H]

Synonym: STH2055

Alternate gene names: 51893193

Gene position: 2193237-2192587 (Counterclockwise)

Preceding gene: 51893194

Following gene: 51893192

Centisome position: 61.5

GC content: 69.74

Gene sequence:

>651_bases
ATGACGACACAGCTCGGCTTTCACGTGGACATGGAGAAGTGCATCGGCTGCAAGGCATGCGAGGCGGCCTGCAAGGACTT
CTACCGGCTGCCGCCCGAGATCCGCTGGCGCCGGGTGCGCTCCTTCGAGACGGGCGAGTTTCCCAAGGCCATCCGGGTCC
ACCTGAGCCTGGCCTGCAACCACTGCGAGGATCCGGCCTGCATGAAGGGCTGCCCGGTGGAAGCGTACACCAAGCGGGCT
GACGGTCTGGTGATCCACGACCCCACCGCCTGCATCGGCTGCCAATACTGCACCTGGACCTGCCCGTATAGCGTGCCCCA
GTTCGACCCCGAGCAGGGCGTGGTCTCCAAGTGCAACGGCTGCTACCAACTGGTGGACCAGGGCCAGCTGCCCCGCTGCG
TCCAGGCCTGCCTGACCGGTGCGCTCAGCTTCGGCGAGGTGGTGGCCCACGAGGCGCAGAAGCGGCAGGCGGTGCGGCAG
GCGCCGGGCTTCCCGGACCCGTCGGTCACCCGGCCGGCAACCCGGTTCGCCTGGCCGGAGAAAGGGCCGCAGCCTGATCG
TCAGGTACGGGTCGCGCCACCTGCCGGTGACGGGACGAGCGTCGGGGGTGCGGCGGAAACCGTGGTGGCCGCGGCGGGGG
AGGTGCGGTAG

Upstream 100 bases:

>100_bases
GTGAACCGGCTGACCGTCTGGGCGGTCGACCCGTTCTCCAAGGAGCCCAACTACAAGCAGCAGGCCGTGCGCCTGCGCAG
GGTGTGAGGGGGGACCGCGG

Downstream 100 bases:

>100_bases
CATGGCGGCGTGGTTGCACGAAGCACAGTACAGTCTTGTGATCTTCACGGTCCTGATCCAGCTCACCGTCGGGGCCCTGT
GGGCCCTGGCCGCGGTCGAC

Product: oxidoreductase anaerobic dimethyl sulfoxide reductase subunit B

Products: NA

Alternate protein names: DMSO reductase iron-sulfur subunit [H]

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MTTQLGFHVDMEKCIGCKACEAACKDFYRLPPEIRWRRVRSFETGEFPKAIRVHLSLACNHCEDPACMKGCPVEAYTKRA
DGLVIHDPTACIGCQYCTWTCPYSVPQFDPEQGVVSKCNGCYQLVDQGQLPRCVQACLTGALSFGEVVAHEAQKRQAVRQ
APGFPDPSVTRPATRFAWPEKGPQPDRQVRVAPPAGDGTSVGGAAETVVAAAGEVR

Sequences:

>Translated_216_residues
MTTQLGFHVDMEKCIGCKACEAACKDFYRLPPEIRWRRVRSFETGEFPKAIRVHLSLACNHCEDPACMKGCPVEAYTKRA
DGLVIHDPTACIGCQYCTWTCPYSVPQFDPEQGVVSKCNGCYQLVDQGQLPRCVQACLTGALSFGEVVAHEAQKRQAVRQ
APGFPDPSVTRPATRFAWPEKGPQPDRQVRVAPPAGDGTSVGGAAETVVAAAGEVR
>Mature_215_residues
TTQLGFHVDMEKCIGCKACEAACKDFYRLPPEIRWRRVRSFETGEFPKAIRVHLSLACNHCEDPACMKGCPVEAYTKRAD
GLVIHDPTACIGCQYCTWTCPYSVPQFDPEQGVVSKCNGCYQLVDQGQLPRCVQACLTGALSFGEVVAHEAQKRQAVRQA
PGFPDPSVTRPATRFAWPEKGPQPDRQVRVAPPAGDGTSVGGAAETVVAAAGEVR

Specific function: Electron transfer subunit of the terminal reductase during anaerobic growth on various sulfoxide and N-oxide compounds [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787872, Length=216, Percent_Identity=39.8148148148148, Blast_Score=161, Evalue=4e-41,
Organism=Escherichia coli, GI1787122, Length=207, Percent_Identity=39.6135265700483, Blast_Score=156, Evalue=1e-39,
Organism=Escherichia coli, GI1787749, Length=183, Percent_Identity=34.4262295081967, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1790326, Length=184, Percent_Identity=34.7826086956522, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI2367345, Length=165, Percent_Identity=36.3636363636364, Blast_Score=103, Evalue=7e-24,
Organism=Escherichia coli, GI1789370, Length=238, Percent_Identity=28.9915966386555, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI226510944, Length=169, Percent_Identity=31.3609467455621, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI2367245, Length=162, Percent_Identity=32.7160493827161, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787740, Length=124, Percent_Identity=31.4516129032258, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787478, Length=154, Percent_Identity=27.9220779220779, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87082180, Length=137, Percent_Identity=30.6569343065693, Blast_Score=60, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR014297 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: NA

Molecular weight: Translated: 23487; Mature: 23356

Theoretical pI: Translated: 7.48; Mature: 7.48

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
8.8 %Cys+Met (Translated Protein)
7.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
8.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTQLGFHVDMEKCIGCKACEAACKDFYRLPPEIRWRRVRSFETGEFPKAIRVHLSLACN
CCCCCCCEECHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHC
HCEDPACMKGCPVEAYTKRADGLVIHDPTACIGCQYCTWTCPYSVPQFDPEQGVVSKCNG
CCCCCHHHCCCCHHHHHHCCCCEEEECCCHHHCCCCCEEECCCCCCCCCCCCCHHHHHHH
CYQLVDQGQLPRCVQACLTGALSFGEVVAHEAQKRQAVRQAPGFPDPSVTRPATRFAWPE
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCC
KGPQPDRQVRVAPPAGDGTSVGGAAETVVAAAGEVR
CCCCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCC
>Mature Secondary Structure 
TTQLGFHVDMEKCIGCKACEAACKDFYRLPPEIRWRRVRSFETGEFPKAIRVHLSLACN
CCCCCCEECHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHC
HCEDPACMKGCPVEAYTKRADGLVIHDPTACIGCQYCTWTCPYSVPQFDPEQGVVSKCNG
CCCCCHHHCCCCHHHHHHCCCCEEEECCCHHHCCCCCEEECCCCCCCCCCCCCHHHHHHH
CYQLVDQGQLPRCVQACLTGALSFGEVVAHEAQKRQAVRQAPGFPDPSVTRPATRFAWPE
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCC
KGPQPDRQVRVAPPAGDGTSVGGAAETVVAAAGEVR
CCCCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3062312; 8905232; 9278503; 2174699; 1653010 [H]