Definition Symbiobacterium thermophilum IAM 14863 chromosome, complete genome.
Accession NC_006177
Length 3,566,135

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The map label for this gene is 51893143

Identifier: 51893143

GI number: 51893143

Start: 2144802

End: 2146319

Strand: Reverse

Name: 51893143

Synonym: STH2005

Alternate gene names: NA

Gene position: 2146319-2144802 (Counterclockwise)

Preceding gene: 51893144

Following gene: 51893138

Centisome position: 60.19

GC content: 71.74

Gene sequence:

>1518_bases
GTGGAGATGAACCCGCGAAAGGAGCAGATGTCGATGAGCAAAGCCGGTCCAAAGGCCTTTGCCAGGGCCTTGCCCCTGAT
GCTGGCCGTCCTGCTGGCCGCGTCCGGCTGTGCGGGCGTGAGGCCGCAGCCGTCCCCCGAGGGCGAGGCGCCGGTTTCTC
CGTCCGTGCAGGTGGATCCCCCGGTGCAGACCACGACGGTGACCGTCTTTTACCCGGACTGGCAGGTGCAGCACCTGATC
CCCGAGCAGCGGCAAGTGCCCGAGGGCAGCGCCGCCGAGCTGGCCACCCGGGTGGTGGAGGAGCTGCTGGCCGGGCCGGC
GGACCCGCACCTGAAGCCTGCGTTCCCCGAAGGGACGCGGCTCCTGGAGCCCGTGAAGCTGGAGGGCGGGCAGGCGACCG
TGAACTTCAGCGGGGAACTCGATCAGGTGCAGGGTTCGGCGGCCGTCATGGCCGCCCTCCACTCGCTCCGCCTGAGCCTC
GGCGACATTCCCGGCATCGATGAGGTCCGGATCCAGGTCAGCGGCGGTTCCGGGGGCGAGCTGGACGGCATGGTGGTGGA
GACGAAGAGCCCGTACCTCTACCTGTACCCGGTGTTCCCCAACCCGGAGCGGACCCGGTACCTGCAGTCCCGGGCGGACC
AGGGGCTGGACACCTGGCGGCTGGACCCGGCGGCGGTGGCCCGGTTTGAGGGGCGCATGTTCGGCTTCACGGCCGCCGAG
CTCCAACAGGCCACGGTCCGGCAGGACGGCGGTCGGGCCGAAGCCTACGTGACCCGCGACGGCACCACCTACCAGTTCAC
GCTGGTGCGCAACCCGGCCGCCGGCGAGAAGGGCGTCTGGACCATCGACAGCCTGAACCCGATGCAGTGGCACGAGTACG
ACGCGGTGCCGGCCGCCGTCCGGGAGCTGGCGGACCGCTACGCAGCGACCACCATCGGCGCGGCGGTCGCCCATTCCGAC
CGGCTCTACCTGATCGCCTCCGTGGAGGAGGGCGAGGTGCGCATCACCTCGGCGGAGGCCGACGGCGATGCGCTGGTGGT
GCGGGTGGCCGAGGATGGCGGCCAGCGGCTCTCCATCGCCTCGGTCCCCCTTCCCGGCGCTGCGCCGGACGTGGTCTTCC
GCTGGGAGGCGGAGCCCACCGGGCCTGTCGCCCAGCACACGCCGGCTGAGGAATTGCCCCGGCTCTACACGGCGGAAGGG
GTGGGGCACCCCGAGGTGAAGCTCACCGGCGACGCCGTGATCGCCTCGGCCGTCAGCGAGCCCGGGCGGATCGCGGTGAA
GGGCTATGCCCGGCACCTCTTCGAGGCCACCGTGGTGGCCCGCATGCTGGACGGCCAGGGGCAGGAGGTGGCGGTCGCCC
ACGCCACCGCCGCGGCGGCCATGTGGAACTGGGGGGAGTTCACCATCGTGCTGGAGCACCATGCTCCGCCCGGCGAGTAC
CGGGTGGAGGTGGGCGACTACAGCATGCGGGACGGCGTCTGGCAGCCGCGGGCGGTGACGTACGTGACCGTGAGGTGA

Upstream 100 bases:

>100_bases
AGGGCAGCCGGTTTACGCTGACGCTGCCGGTTTAACCGGCACGTCACACTTTCGTAAAACCTCGTCATCGGGGGGTCATA
CTTCACCGGTAGACTCGGTC

Downstream 100 bases:

>100_bases
ACGGGCTGCGCGTGGGGCCGGCCTGAGGATTCTCGTGCCAGGTGAATCCGCAGAACGGGGCTGTCCCAAGAGCAGATGAC
TCTGCTTGGGGCAGCCCCGT

Product: hypothetical protein

Products: NA

Alternate protein names: Spore Germination Protein-Like Protein

Number of amino acids: Translated: 505; Mature: 505

Protein sequence:

>505_residues
MEMNPRKEQMSMSKAGPKAFARALPLMLAVLLAASGCAGVRPQPSPEGEAPVSPSVQVDPPVQTTTVTVFYPDWQVQHLI
PEQRQVPEGSAAELATRVVEELLAGPADPHLKPAFPEGTRLLEPVKLEGGQATVNFSGELDQVQGSAAVMAALHSLRLSL
GDIPGIDEVRIQVSGGSGGELDGMVVETKSPYLYLYPVFPNPERTRYLQSRADQGLDTWRLDPAAVARFEGRMFGFTAAE
LQQATVRQDGGRAEAYVTRDGTTYQFTLVRNPAAGEKGVWTIDSLNPMQWHEYDAVPAAVRELADRYAATTIGAAVAHSD
RLYLIASVEEGEVRITSAEADGDALVVRVAEDGGQRLSIASVPLPGAAPDVVFRWEAEPTGPVAQHTPAEELPRLYTAEG
VGHPEVKLTGDAVIASAVSEPGRIAVKGYARHLFEATVVARMLDGQGQEVAVAHATAAAAMWNWGEFTIVLEHHAPPGEY
RVEVGDYSMRDGVWQPRAVTYVTVR

Sequences:

>Translated_505_residues
MEMNPRKEQMSMSKAGPKAFARALPLMLAVLLAASGCAGVRPQPSPEGEAPVSPSVQVDPPVQTTTVTVFYPDWQVQHLI
PEQRQVPEGSAAELATRVVEELLAGPADPHLKPAFPEGTRLLEPVKLEGGQATVNFSGELDQVQGSAAVMAALHSLRLSL
GDIPGIDEVRIQVSGGSGGELDGMVVETKSPYLYLYPVFPNPERTRYLQSRADQGLDTWRLDPAAVARFEGRMFGFTAAE
LQQATVRQDGGRAEAYVTRDGTTYQFTLVRNPAAGEKGVWTIDSLNPMQWHEYDAVPAAVRELADRYAATTIGAAVAHSD
RLYLIASVEEGEVRITSAEADGDALVVRVAEDGGQRLSIASVPLPGAAPDVVFRWEAEPTGPVAQHTPAEELPRLYTAEG
VGHPEVKLTGDAVIASAVSEPGRIAVKGYARHLFEATVVARMLDGQGQEVAVAHATAAAAMWNWGEFTIVLEHHAPPGEY
RVEVGDYSMRDGVWQPRAVTYVTVR
>Mature_505_residues
MEMNPRKEQMSMSKAGPKAFARALPLMLAVLLAASGCAGVRPQPSPEGEAPVSPSVQVDPPVQTTTVTVFYPDWQVQHLI
PEQRQVPEGSAAELATRVVEELLAGPADPHLKPAFPEGTRLLEPVKLEGGQATVNFSGELDQVQGSAAVMAALHSLRLSL
GDIPGIDEVRIQVSGGSGGELDGMVVETKSPYLYLYPVFPNPERTRYLQSRADQGLDTWRLDPAAVARFEGRMFGFTAAE
LQQATVRQDGGRAEAYVTRDGTTYQFTLVRNPAAGEKGVWTIDSLNPMQWHEYDAVPAAVRELADRYAATTIGAAVAHSD
RLYLIASVEEGEVRITSAEADGDALVVRVAEDGGQRLSIASVPLPGAAPDVVFRWEAEPTGPVAQHTPAEELPRLYTAEG
VGHPEVKLTGDAVIASAVSEPGRIAVKGYARHLFEATVVARMLDGQGQEVAVAHATAAAAMWNWGEFTIVLEHHAPPGEY
RVEVGDYSMRDGVWQPRAVTYVTVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54309; Mature: 54309

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEMNPRKEQMSMSKAGPKAFARALPLMLAVLLAASGCAGVRPQPSPEGEAPVSPSVQVDP
CCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECC
PVQTTTVTVFYPDWQVQHLIPEQRQVPEGSAAELATRVVEELLAGPADPHLKPAFPEGTR
CCCEEEEEEECCCCEEECCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
LLEPVKLEGGQATVNFSGELDQVQGSAAVMAALHSLRLSLGDIPGIDEVRIQVSGGSGGE
CCCCEEECCCEEEEEECCCHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCC
LDGMVVETKSPYLYLYPVFPNPERTRYLQSRADQGLDTWRLDPAAVARFEGRMFGFTAAE
CCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCEECCCHHHHHHHCCCEEECCHHH
LQQATVRQDGGRAEAYVTRDGTTYQFTLVRNPAAGEKGVWTIDSLNPMQWHEYDAVPAAV
HHHHHHHCCCCCEEEEEEECCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCHHHHH
RELADRYAATTIGAAVAHSDRLYLIASVEEGEVRITSAEADGDALVVRVAEDGGQRLSIA
HHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEECCCCCEEEEEEECCCCCEEEEE
SVPLPGAAPDVVFRWEAEPTGPVAQHTPAEELPRLYTAEGVGHPEVKLTGDAVIASAVSE
ECCCCCCCCCEEEEEECCCCCCCCCCCCHHHHCCEEECCCCCCCCEEEECCHHHHHHHCC
PGRIAVKGYARHLFEATVVARMLDGQGQEVAVAHATAAAAMWNWGEFTIVLEHHAPPGEY
CCEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHEECCCEEEEEEECCCCCCCE
RVEVGDYSMRDGVWQPRAVTYVTVR
EEEECCCHHHCCCCCCCEEEEEEEC
>Mature Secondary Structure
MEMNPRKEQMSMSKAGPKAFARALPLMLAVLLAASGCAGVRPQPSPEGEAPVSPSVQVDP
CCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECC
PVQTTTVTVFYPDWQVQHLIPEQRQVPEGSAAELATRVVEELLAGPADPHLKPAFPEGTR
CCCEEEEEEECCCCEEECCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
LLEPVKLEGGQATVNFSGELDQVQGSAAVMAALHSLRLSLGDIPGIDEVRIQVSGGSGGE
CCCCEEECCCEEEEEECCCHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCC
LDGMVVETKSPYLYLYPVFPNPERTRYLQSRADQGLDTWRLDPAAVARFEGRMFGFTAAE
CCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCEECCCHHHHHHHCCCEEECCHHH
LQQATVRQDGGRAEAYVTRDGTTYQFTLVRNPAAGEKGVWTIDSLNPMQWHEYDAVPAAV
HHHHHHHCCCCCEEEEEEECCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCHHHHH
RELADRYAATTIGAAVAHSDRLYLIASVEEGEVRITSAEADGDALVVRVAEDGGQRLSIA
HHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEECCCCCEEEEEEECCCCCEEEEE
SVPLPGAAPDVVFRWEAEPTGPVAQHTPAEELPRLYTAEGVGHPEVKLTGDAVIASAVSE
ECCCCCCCCCEEEEEECCCCCCCCCCCCHHHHCCEEECCCCCCCCEEEECCHHHHHHHCC
PGRIAVKGYARHLFEATVVARMLDGQGQEVAVAHATAAAAMWNWGEFTIVLEHHAPPGEY
CCEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHEECCCEEEEEEECCCCCCCE
RVEVGDYSMRDGVWQPRAVTYVTVR
EEEECCCHHHCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA