| Definition | Symbiobacterium thermophilum IAM 14863 chromosome, complete genome. |
|---|---|
| Accession | NC_006177 |
| Length | 3,566,135 |
Click here to switch to the map view.
The map label for this gene is 51893143
Identifier: 51893143
GI number: 51893143
Start: 2144802
End: 2146319
Strand: Reverse
Name: 51893143
Synonym: STH2005
Alternate gene names: NA
Gene position: 2146319-2144802 (Counterclockwise)
Preceding gene: 51893144
Following gene: 51893138
Centisome position: 60.19
GC content: 71.74
Gene sequence:
>1518_bases GTGGAGATGAACCCGCGAAAGGAGCAGATGTCGATGAGCAAAGCCGGTCCAAAGGCCTTTGCCAGGGCCTTGCCCCTGAT GCTGGCCGTCCTGCTGGCCGCGTCCGGCTGTGCGGGCGTGAGGCCGCAGCCGTCCCCCGAGGGCGAGGCGCCGGTTTCTC CGTCCGTGCAGGTGGATCCCCCGGTGCAGACCACGACGGTGACCGTCTTTTACCCGGACTGGCAGGTGCAGCACCTGATC CCCGAGCAGCGGCAAGTGCCCGAGGGCAGCGCCGCCGAGCTGGCCACCCGGGTGGTGGAGGAGCTGCTGGCCGGGCCGGC GGACCCGCACCTGAAGCCTGCGTTCCCCGAAGGGACGCGGCTCCTGGAGCCCGTGAAGCTGGAGGGCGGGCAGGCGACCG TGAACTTCAGCGGGGAACTCGATCAGGTGCAGGGTTCGGCGGCCGTCATGGCCGCCCTCCACTCGCTCCGCCTGAGCCTC GGCGACATTCCCGGCATCGATGAGGTCCGGATCCAGGTCAGCGGCGGTTCCGGGGGCGAGCTGGACGGCATGGTGGTGGA GACGAAGAGCCCGTACCTCTACCTGTACCCGGTGTTCCCCAACCCGGAGCGGACCCGGTACCTGCAGTCCCGGGCGGACC AGGGGCTGGACACCTGGCGGCTGGACCCGGCGGCGGTGGCCCGGTTTGAGGGGCGCATGTTCGGCTTCACGGCCGCCGAG CTCCAACAGGCCACGGTCCGGCAGGACGGCGGTCGGGCCGAAGCCTACGTGACCCGCGACGGCACCACCTACCAGTTCAC GCTGGTGCGCAACCCGGCCGCCGGCGAGAAGGGCGTCTGGACCATCGACAGCCTGAACCCGATGCAGTGGCACGAGTACG ACGCGGTGCCGGCCGCCGTCCGGGAGCTGGCGGACCGCTACGCAGCGACCACCATCGGCGCGGCGGTCGCCCATTCCGAC CGGCTCTACCTGATCGCCTCCGTGGAGGAGGGCGAGGTGCGCATCACCTCGGCGGAGGCCGACGGCGATGCGCTGGTGGT GCGGGTGGCCGAGGATGGCGGCCAGCGGCTCTCCATCGCCTCGGTCCCCCTTCCCGGCGCTGCGCCGGACGTGGTCTTCC GCTGGGAGGCGGAGCCCACCGGGCCTGTCGCCCAGCACACGCCGGCTGAGGAATTGCCCCGGCTCTACACGGCGGAAGGG GTGGGGCACCCCGAGGTGAAGCTCACCGGCGACGCCGTGATCGCCTCGGCCGTCAGCGAGCCCGGGCGGATCGCGGTGAA GGGCTATGCCCGGCACCTCTTCGAGGCCACCGTGGTGGCCCGCATGCTGGACGGCCAGGGGCAGGAGGTGGCGGTCGCCC ACGCCACCGCCGCGGCGGCCATGTGGAACTGGGGGGAGTTCACCATCGTGCTGGAGCACCATGCTCCGCCCGGCGAGTAC CGGGTGGAGGTGGGCGACTACAGCATGCGGGACGGCGTCTGGCAGCCGCGGGCGGTGACGTACGTGACCGTGAGGTGA
Upstream 100 bases:
>100_bases AGGGCAGCCGGTTTACGCTGACGCTGCCGGTTTAACCGGCACGTCACACTTTCGTAAAACCTCGTCATCGGGGGGTCATA CTTCACCGGTAGACTCGGTC
Downstream 100 bases:
>100_bases ACGGGCTGCGCGTGGGGCCGGCCTGAGGATTCTCGTGCCAGGTGAATCCGCAGAACGGGGCTGTCCCAAGAGCAGATGAC TCTGCTTGGGGCAGCCCCGT
Product: hypothetical protein
Products: NA
Alternate protein names: Spore Germination Protein-Like Protein
Number of amino acids: Translated: 505; Mature: 505
Protein sequence:
>505_residues MEMNPRKEQMSMSKAGPKAFARALPLMLAVLLAASGCAGVRPQPSPEGEAPVSPSVQVDPPVQTTTVTVFYPDWQVQHLI PEQRQVPEGSAAELATRVVEELLAGPADPHLKPAFPEGTRLLEPVKLEGGQATVNFSGELDQVQGSAAVMAALHSLRLSL GDIPGIDEVRIQVSGGSGGELDGMVVETKSPYLYLYPVFPNPERTRYLQSRADQGLDTWRLDPAAVARFEGRMFGFTAAE LQQATVRQDGGRAEAYVTRDGTTYQFTLVRNPAAGEKGVWTIDSLNPMQWHEYDAVPAAVRELADRYAATTIGAAVAHSD RLYLIASVEEGEVRITSAEADGDALVVRVAEDGGQRLSIASVPLPGAAPDVVFRWEAEPTGPVAQHTPAEELPRLYTAEG VGHPEVKLTGDAVIASAVSEPGRIAVKGYARHLFEATVVARMLDGQGQEVAVAHATAAAAMWNWGEFTIVLEHHAPPGEY RVEVGDYSMRDGVWQPRAVTYVTVR
Sequences:
>Translated_505_residues MEMNPRKEQMSMSKAGPKAFARALPLMLAVLLAASGCAGVRPQPSPEGEAPVSPSVQVDPPVQTTTVTVFYPDWQVQHLI PEQRQVPEGSAAELATRVVEELLAGPADPHLKPAFPEGTRLLEPVKLEGGQATVNFSGELDQVQGSAAVMAALHSLRLSL GDIPGIDEVRIQVSGGSGGELDGMVVETKSPYLYLYPVFPNPERTRYLQSRADQGLDTWRLDPAAVARFEGRMFGFTAAE LQQATVRQDGGRAEAYVTRDGTTYQFTLVRNPAAGEKGVWTIDSLNPMQWHEYDAVPAAVRELADRYAATTIGAAVAHSD RLYLIASVEEGEVRITSAEADGDALVVRVAEDGGQRLSIASVPLPGAAPDVVFRWEAEPTGPVAQHTPAEELPRLYTAEG VGHPEVKLTGDAVIASAVSEPGRIAVKGYARHLFEATVVARMLDGQGQEVAVAHATAAAAMWNWGEFTIVLEHHAPPGEY RVEVGDYSMRDGVWQPRAVTYVTVR >Mature_505_residues MEMNPRKEQMSMSKAGPKAFARALPLMLAVLLAASGCAGVRPQPSPEGEAPVSPSVQVDPPVQTTTVTVFYPDWQVQHLI PEQRQVPEGSAAELATRVVEELLAGPADPHLKPAFPEGTRLLEPVKLEGGQATVNFSGELDQVQGSAAVMAALHSLRLSL GDIPGIDEVRIQVSGGSGGELDGMVVETKSPYLYLYPVFPNPERTRYLQSRADQGLDTWRLDPAAVARFEGRMFGFTAAE LQQATVRQDGGRAEAYVTRDGTTYQFTLVRNPAAGEKGVWTIDSLNPMQWHEYDAVPAAVRELADRYAATTIGAAVAHSD RLYLIASVEEGEVRITSAEADGDALVVRVAEDGGQRLSIASVPLPGAAPDVVFRWEAEPTGPVAQHTPAEELPRLYTAEG VGHPEVKLTGDAVIASAVSEPGRIAVKGYARHLFEATVVARMLDGQGQEVAVAHATAAAAMWNWGEFTIVLEHHAPPGEY RVEVGDYSMRDGVWQPRAVTYVTVR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54309; Mature: 54309
Theoretical pI: Translated: 4.67; Mature: 4.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEMNPRKEQMSMSKAGPKAFARALPLMLAVLLAASGCAGVRPQPSPEGEAPVSPSVQVDP CCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECC PVQTTTVTVFYPDWQVQHLIPEQRQVPEGSAAELATRVVEELLAGPADPHLKPAFPEGTR CCCEEEEEEECCCCEEECCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC LLEPVKLEGGQATVNFSGELDQVQGSAAVMAALHSLRLSLGDIPGIDEVRIQVSGGSGGE CCCCEEECCCEEEEEECCCHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCC LDGMVVETKSPYLYLYPVFPNPERTRYLQSRADQGLDTWRLDPAAVARFEGRMFGFTAAE CCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCEECCCHHHHHHHCCCEEECCHHH LQQATVRQDGGRAEAYVTRDGTTYQFTLVRNPAAGEKGVWTIDSLNPMQWHEYDAVPAAV HHHHHHHCCCCCEEEEEEECCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCHHHHH RELADRYAATTIGAAVAHSDRLYLIASVEEGEVRITSAEADGDALVVRVAEDGGQRLSIA HHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEECCCCCEEEEEEECCCCCEEEEE SVPLPGAAPDVVFRWEAEPTGPVAQHTPAEELPRLYTAEGVGHPEVKLTGDAVIASAVSE ECCCCCCCCCEEEEEECCCCCCCCCCCCHHHHCCEEECCCCCCCCEEEECCHHHHHHHCC PGRIAVKGYARHLFEATVVARMLDGQGQEVAVAHATAAAAMWNWGEFTIVLEHHAPPGEY CCEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHEECCCEEEEEEECCCCCCCE RVEVGDYSMRDGVWQPRAVTYVTVR EEEECCCHHHCCCCCCCEEEEEEEC >Mature Secondary Structure MEMNPRKEQMSMSKAGPKAFARALPLMLAVLLAASGCAGVRPQPSPEGEAPVSPSVQVDP CCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECC PVQTTTVTVFYPDWQVQHLIPEQRQVPEGSAAELATRVVEELLAGPADPHLKPAFPEGTR CCCEEEEEEECCCCEEECCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC LLEPVKLEGGQATVNFSGELDQVQGSAAVMAALHSLRLSLGDIPGIDEVRIQVSGGSGGE CCCCEEECCCEEEEEECCCHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCC LDGMVVETKSPYLYLYPVFPNPERTRYLQSRADQGLDTWRLDPAAVARFEGRMFGFTAAE CCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCEECCCHHHHHHHCCCEEECCHHH LQQATVRQDGGRAEAYVTRDGTTYQFTLVRNPAAGEKGVWTIDSLNPMQWHEYDAVPAAV HHHHHHHCCCCCEEEEEEECCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCHHHHH RELADRYAATTIGAAVAHSDRLYLIASVEEGEVRITSAEADGDALVVRVAEDGGQRLSIA HHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEECCCCCEEEEEEECCCCCEEEEE SVPLPGAAPDVVFRWEAEPTGPVAQHTPAEELPRLYTAEGVGHPEVKLTGDAVIASAVSE ECCCCCCCCCEEEEEECCCCCCCCCCCCHHHHCCEEECCCCCCCCEEEECCHHHHHHHCC PGRIAVKGYARHLFEATVVARMLDGQGQEVAVAHATAAAAMWNWGEFTIVLEHHAPPGEY CCEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHEECCCEEEEEEECCCCCCCE RVEVGDYSMRDGVWQPRAVTYVTVR EEEECCCHHHCCCCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA