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The map label for this gene is ycdF [H]

Identifier: 51893013

GI number: 51893013

Start: 2016599

End: 2017441

Strand: Reverse

Name: ycdF [H]

Synonym: STH1875

Alternate gene names: 51893013

Gene position: 2017441-2016599 (Counterclockwise)

Preceding gene: 51893017

Following gene: 51893011

Centisome position: 56.57

GC content: 72.84

Gene sequence:

>843_bases
ATGAACGGGATGGGCACGCCAGCGCGCGAGGTCGTGGTCATCACCGGCGCGGGAGGCATGGGCGTCGCCATTGCGCGCCG
TCTGGGGCCCGGCCGGCGGGTGCTGCTGGCCGACTACTCGGAGACCGTGCTGCAGCAGGCCGTCAAACAGCTTGAGGGCG
AGGGCTTCGACGTGCACGCCCAGCAGACCGACGTGTCGGATCCGGCCGCGGTGAAGAGCCTGGCCGACACGGCCGAGACG
CTGGGCACGTTCCGGATTCTGGTCCACACCGCCGGCGTCTCGCCGGTCCAGGCGCCGCCCGAGCGGGTGATCGCCGTGGA
CGTGGTCGGCACAGCGCTGGTGCTGGACGAGTTCCTCCGGCTCGCGGGGCCGCAGAGCGTCGCCGTGTGCATCGCGAGCA
TGGCCGGGGCCATGGCCACCCTGCCGCCGGAGGTGGAGCGGGCCCTGGCCGCCACGCCCACCGACCAGCTGGCCTCGCTT
CCGGTGCTCGACCCGCAGAAGCTGGACCGGGGCGCCGCCTACAGTATTGCCAAGCGGGCGAACCAGTTGCGGGTGCAGTG
GGCGTCCCTGGCGTGGGGGCGCAAGGGCGCGCGGGTCGTCTCGGTGAGCCCGGGCATCATCTCGACGCCCATGGGACAGG
AGGAGCTCAGCGGCCCGTCCGGGGACATGATTCGCGCGATGATCGCCGCCTCAGGCACCGGGCGCATCGGCACGCCGGAC
GACATCGCCGCCGCGGTCGAGTTCCTGGTCAGCCCCGCTGCCTCGTTCATCACCGGGACGGACCTGCTGGTGGACGGCGG
GGCCATCGCGGGCATGCGCTACGCCCTGTCCCGGGGCGAGTAG

Upstream 100 bases:

>100_bases
CTATATGGTAGAATTGGAAGCAAGGAACCAGTCATGCCGTCGTGGGTTGTGCCCGCGGTGTGGAGGGAATCCTGGTGTGT
ACGAAAGGGGAGGAATGCAC

Downstream 100 bases:

>100_bases
CGGATCGTGGGCGCCCGGTGAGCCGCGCCTACCGATTATTGGAGATGGCCGCGGACAGATCGTGAGCCGCGCGGCGGAGC
CGCTCCACGCCGGCGCTGGA

Product: short chain dehydrogenase

Products: NA

Alternate protein names: GLCDH-II; GDH-II; General stress protein 74; GSP74 [H]

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MNGMGTPAREVVVITGAGGMGVAIARRLGPGRRVLLADYSETVLQQAVKQLEGEGFDVHAQQTDVSDPAAVKSLADTAET
LGTFRILVHTAGVSPVQAPPERVIAVDVVGTALVLDEFLRLAGPQSVAVCIASMAGAMATLPPEVERALAATPTDQLASL
PVLDPQKLDRGAAYSIAKRANQLRVQWASLAWGRKGARVVSVSPGIISTPMGQEELSGPSGDMIRAMIAASGTGRIGTPD
DIAAAVEFLVSPAASFITGTDLLVDGGAIAGMRYALSRGE

Sequences:

>Translated_280_residues
MNGMGTPAREVVVITGAGGMGVAIARRLGPGRRVLLADYSETVLQQAVKQLEGEGFDVHAQQTDVSDPAAVKSLADTAET
LGTFRILVHTAGVSPVQAPPERVIAVDVVGTALVLDEFLRLAGPQSVAVCIASMAGAMATLPPEVERALAATPTDQLASL
PVLDPQKLDRGAAYSIAKRANQLRVQWASLAWGRKGARVVSVSPGIISTPMGQEELSGPSGDMIRAMIAASGTGRIGTPD
DIAAAVEFLVSPAASFITGTDLLVDGGAIAGMRYALSRGE
>Mature_280_residues
MNGMGTPAREVVVITGAGGMGVAIARRLGPGRRVLLADYSETVLQQAVKQLEGEGFDVHAQQTDVSDPAAVKSLADTAET
LGTFRILVHTAGVSPVQAPPERVIAVDVVGTALVLDEFLRLAGPQSVAVCIASMAGAMATLPPEVERALAATPTDQLASL
PVLDPQKLDRGAAYSIAKRANQLRVQWASLAWGRKGARVVSVSPGIISTPMGQEELSGPSGDMIRAMIAASGTGRIGTPD
DIAAAVEFLVSPAASFITGTDLLVDGGAIAGMRYALSRGE

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI5031737, Length=277, Percent_Identity=28.158844765343, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.47 [H]

Molecular weight: Translated: 28790; Mature: 28790

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGMGTPAREVVVITGAGGMGVAIARRLGPGRRVLLADYSETVLQQAVKQLEGEGFDVHA
CCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCCEEEE
QQTDVSDPAAVKSLADTAETLGTFRILVHTAGVSPVQAPPERVIAVDVVGTALVLDEFLR
CCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHH
LAGPQSVAVCIASMAGAMATLPPEVERALAATPTDQLASLPVLDPQKLDRGAAYSIAKRA
HCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHCCCCCCHHHHCCCHHHHHHHHH
NQLRVQWASLAWGRKGARVVSVSPGIISTPMGQEELSGPSGDMIRAMIAASGTGRIGTPD
HHHHEEHHHHHCCCCCCEEEEECCCCEECCCCHHHCCCCCHHHHHHHHHHCCCCCCCCCH
DIAAAVEFLVSPAASFITGTDLLVDGGAIAGMRYALSRGE
HHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHCCCC
>Mature Secondary Structure
MNGMGTPAREVVVITGAGGMGVAIARRLGPGRRVLLADYSETVLQQAVKQLEGEGFDVHA
CCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCCEEEE
QQTDVSDPAAVKSLADTAETLGTFRILVHTAGVSPVQAPPERVIAVDVVGTALVLDEFLR
CCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHH
LAGPQSVAVCIASMAGAMATLPPEVERALAATPTDQLASLPVLDPQKLDRGAAYSIAKRA
HCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHCCCCCCHHHHCCCHHHHHHHHH
NQLRVQWASLAWGRKGARVVSVSPGIISTPMGQEELSGPSGDMIRAMIAASGTGRIGTPD
HHHHEEHHHHHCCCCCCEEEEECCCCEECCCCHHHCCCCCHHHHHHHHHHCCCCCCCCCH
DIAAAVEFLVSPAASFITGTDLLVDGGAIAGMRYALSRGE
HHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274031; 9384377; 9298659 [H]