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The map label for this gene is oppA [H]

Identifier: 51892181

GI number: 51892181

Start: 1162406

End: 1162765

Strand: Reverse

Name: oppA [H]

Synonym: STH1043

Alternate gene names: 51892181

Gene position: 1162765-1162406 (Counterclockwise)

Preceding gene: 51892182

Following gene: 51892176

Centisome position: 32.61

GC content: 65.0

Gene sequence:

>360_bases
ATGCGTCGTTTCGTTGCAGGCATGCTGGCGGTGCTGATGCTGGCAGCCGTCGGGTGCTCCGGCAGGTCCAGTTCGGGTTC
GCAAGAGATGGTTATCCGGATGAACATCGGCACGAACCCGCCGTCCCTCGACCCGCGGGTCACCACCGGCCTTCCCGAGT
CCCACGTGGAGATCGCCCTGTTCGAGGGCCTGATGCGGCTGGACGAGAAGGGCAACGCGATCCCGGGTGCGGCAGAGCGG
TACGAAGTCAACGACGACGCCACCGTCTTCACCTTCTACCTGCGTGACGGCCTGAAGTGGTCCAACGGCGACCCGCTGAC
CGCCGAGGATTTCGTCTGGACCTGGAAGTCCGTCCCCTGA

Upstream 100 bases:

>100_bases
GAACCGAGGACACCGGTCAGACAGGCGACCGCGATCCGACGAGTGTCCGGGAGCGAACGACTGAGAGAGACAGAGATGCG
CTGAGGGAGGTTTACACACG

Downstream 100 bases:

>100_bases
TCGCGAGCAAAACCGCCTGCCCGTTCGGCAGGCGGTTGCTCGTTTTCCCCTTCACGCCACCAGCGTCGTCTGCAGGGCCA
GCTGCCCCACCAGGGCGGCC

Product: oligopeptide ABC transporter substrate-binding protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 119; Mature: 119

Protein sequence:

>119_residues
MRRFVAGMLAVLMLAAVGCSGRSSSGSQEMVIRMNIGTNPPSLDPRVTTGLPESHVEIALFEGLMRLDEKGNAIPGAAER
YEVNDDATVFTFYLRDGLKWSNGDPLTAEDFVWTWKSVP

Sequences:

>Translated_119_residues
MRRFVAGMLAVLMLAAVGCSGRSSSGSQEMVIRMNIGTNPPSLDPRVTTGLPESHVEIALFEGLMRLDEKGNAIPGAAER
YEVNDDATVFTFYLRDGLKWSNGDPLTAEDFVWTWKSVP
>Mature_119_residues
MRRFVAGMLAVLMLAAVGCSGRSSSGSQEMVIRMNIGTNPPSLDPRVTTGLPESHVEIALFEGLMRLDEKGNAIPGAAER
YEVNDDATVFTFYLRDGLKWSNGDPLTAEDFVWTWKSVP

Specific function: This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, it binds peptides up to five amino acids long with high affinity [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787495, Length=114, Percent_Identity=42.1052631578947, Blast_Score=91, Evalue=1e-20,
Organism=Escherichia coli, GI87081878, Length=107, Percent_Identity=43.9252336448598, Blast_Score=87, Evalue=3e-19,
Organism=Escherichia coli, GI1789397, Length=88, Percent_Identity=42.0454545454545, Blast_Score=81, Evalue=2e-17,

Paralogues:

None

Copy number: 760 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2360 Molecules/Cell In: Stationary-Phase,

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 13036; Mature: 13036

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01040 SBP_BACTERIAL_5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRFVAGMLAVLMLAAVGCSGRSSSGSQEMVIRMNIGTNPPSLDPRVTTGLPESHVEIAL
CHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCEEECCCCCCHHHHHH
FEGLMRLDEKGNAIPGAAERYEVNDDATVFTFYLRDGLKWSNGDPLTAEDFVWTWKSVP
HHHHHHHHCCCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCC
>Mature Secondary Structure
MRRFVAGMLAVLMLAAVGCSGRSSSGSQEMVIRMNIGTNPPSLDPRVTTGLPESHVEIAL
CHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCEEECCCCCCHHHHHH
FEGLMRLDEKGNAIPGAAERYEVNDDATVFTFYLRDGLKWSNGDPLTAEDFVWTWKSVP
HHHHHHHHCCCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]