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The map label for this gene is yebC [C]

Identifier: 51892142

GI number: 51892142

Start: 1122772

End: 1123500

Strand: Reverse

Name: yebC [C]

Synonym: STH1004

Alternate gene names: 51892142

Gene position: 1123500-1122772 (Counterclockwise)

Preceding gene: 51892144

Following gene: 51892140

Centisome position: 31.5

GC content: 65.43

Gene sequence:

>729_bases
TTGGGCCGAAAGTGGGAGAACATCAAGCGATCGAAAGCCAAACTGGACCAGCAGCGAGGGGCGACCTTCTCCCGCATCAC
GAAGGACATCATGAAGGCCGCCCGAGAGGGAGGGCCCGATCCGGAGACCAACTTTCTGCTGAAGGTGGCGGTCGCCGCGG
CCCGCAAGGCCAACATGCCCAACGAGAACATCCAGCGGGCCATCGCCCGCGGGGCCGGGCTGGACAGCGCCGAGCGCTTC
GACGAGATCGTGTACGAGGGCTATGGCCCCGGCGGCGTCGCCATCATGATGAACATCGTCACCGACAACCGCAACCGCAC
CGCGGCAGACGTGCGCCACATCTTCTCCAAGCACGGCGGCTCGTTGGGTGAGACCGGCTGCGTCAGCTGGATGTTCAAGA
AGCGCGGCGTGATCGAGATCGACCGGGGCGAGACCCCCATCGGCGAGGACGACCTCATGATGATCGCCCTGGACGCCGGC
GCGGAGGACCTGGTCACGGAGGAGGACTCCTACGCGATCTACACCGCCCCGGATGCGCTCAACCAGGTGATGAAGCAACT
GGAGGCGGCGGGCGTCCCGGTGGAGAAGGGCGAGGTGGCCATGGTGCCCACCACGACCGTGGCCGTGTCGGGCGAGGAAG
CCGAACAGCTGATGCGCCTCCTGGACCTGCTGGAGGAGCACGACGACGTGCAGAACGTGTATACGAACGCCGATATCAGC
GAAGCGTAA

Upstream 100 bases:

>100_bases
AAAGACGTTTCGTGGACCACACCGCGGGATCCGCCTTGTCGCCCGATTTCGCTGCGTGCTACAATGTTCAGCGCCAATCT
AGTCGGAGGGGGTTTCACCC

Downstream 100 bases:

>100_bases
AGGTGCGGCGGCGCCCCCGGAGTCGGGGCGCCGCCGCGCGTCCGCGGGGCTCAGGCCATCCCCTCGGGTTCCCGGCCCCG
CCGGAGCAGGAGCGGCTCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MGRKWENIKRSKAKLDQQRGATFSRITKDIMKAAREGGPDPETNFLLKVAVAAARKANMPNENIQRAIARGAGLDSAERF
DEIVYEGYGPGGVAIMMNIVTDNRNRTAADVRHIFSKHGGSLGETGCVSWMFKKRGVIEIDRGETPIGEDDLMMIALDAG
AEDLVTEEDSYAIYTAPDALNQVMKQLEAAGVPVEKGEVAMVPTTTVAVSGEEAEQLMRLLDLLEEHDDVQNVYTNADIS
EA

Sequences:

>Translated_242_residues
MGRKWENIKRSKAKLDQQRGATFSRITKDIMKAAREGGPDPETNFLLKVAVAAARKANMPNENIQRAIARGAGLDSAERF
DEIVYEGYGPGGVAIMMNIVTDNRNRTAADVRHIFSKHGGSLGETGCVSWMFKKRGVIEIDRGETPIGEDDLMMIALDAG
AEDLVTEEDSYAIYTAPDALNQVMKQLEAAGVPVEKGEVAMVPTTTVAVSGEEAEQLMRLLDLLEEHDDVQNVYTNADIS
EA
>Mature_241_residues
GRKWENIKRSKAKLDQQRGATFSRITKDIMKAAREGGPDPETNFLLKVAVAAARKANMPNENIQRAIARGAGLDSAERFD
EIVYEGYGPGGVAIMMNIVTDNRNRTAADVRHIFSKHGGSLGETGCVSWMFKKRGVIEIDRGETPIGEDDLMMIALDAGA
EDLVTEEDSYAIYTAPDALNQVMKQLEAAGVPVEKGEVAMVPTTTVAVSGEEAEQLMRLLDLLEEHDDVQNVYTNADISE
A

Specific function: Unknown

COG id: COG0217

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TACO1 family

Homologues:

Organism=Homo sapiens, GI27545315, Length=241, Percent_Identity=29.4605809128631, Blast_Score=122, Evalue=2e-28,
Organism=Escherichia coli, GI1788171, Length=239, Percent_Identity=47.2803347280335, Blast_Score=223, Evalue=7e-60,
Organism=Escherichia coli, GI1788294, Length=241, Percent_Identity=39.4190871369295, Blast_Score=151, Evalue=4e-38,
Organism=Caenorhabditis elegans, GI17556100, Length=240, Percent_Identity=24.1666666666667, Blast_Score=72, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6321458, Length=260, Percent_Identity=30, Blast_Score=95, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24583305, Length=245, Percent_Identity=27.3469387755102, Blast_Score=78, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1004_SYMTH (Q67QQ4)

Other databases:

- EMBL:   AP006840
- RefSeq:   YP_074833.1
- ProteinModelPortal:   Q67QQ4
- SMR:   Q67QQ4
- GeneID:   2980950
- GenomeReviews:   AP006840_GR
- KEGG:   sth:STH1004
- NMPDR:   fig|292459.1.peg.962
- HOGENOM:   HBG715231
- OMA:   VYANFDI
- ProtClustDB:   PRK12378
- BioCyc:   STHE292459:STH1004-MONOMER
- HAMAP:   MF_00693
- InterPro:   IPR002876
- InterPro:   IPR017856
- Gene3D:   G3DSA:1.10.10.200
- PANTHER:   PTHR12532
- TIGRFAMs:   TIGR01033

Pfam domain/function: PF01709 DUF28; SSF75625 DUF28

EC number: NA

Molecular weight: Translated: 26416; Mature: 26285

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRKWENIKRSKAKLDQQRGATFSRITKDIMKAAREGGPDPETNFLLKVAVAAARKANMP
CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
NENIQRAIARGAGLDSAERFDEIVYEGYGPGGVAIMMNIVTDNRNRTAADVRHIFSKHGG
HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCC
SLGETGCVSWMFKKRGVIEIDRGETPIGEDDLMMIALDAGAEDLVTEEDSYAIYTAPDAL
CCCCHHHHHHHHHCCCEEEECCCCCCCCCCCEEEEEECCCCHHHHCCCCCEEEEECHHHH
NQVMKQLEAAGVPVEKGEVAMVPTTTVAVSGEEAEQLMRLLDLLEEHDDVQNVYTNADIS
HHHHHHHHHCCCCCCCCCEEEECCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
EA
CC
>Mature Secondary Structure 
GRKWENIKRSKAKLDQQRGATFSRITKDIMKAAREGGPDPETNFLLKVAVAAARKANMP
CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
NENIQRAIARGAGLDSAERFDEIVYEGYGPGGVAIMMNIVTDNRNRTAADVRHIFSKHGG
HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCC
SLGETGCVSWMFKKRGVIEIDRGETPIGEDDLMMIALDAGAEDLVTEEDSYAIYTAPDAL
CCCCHHHHHHHHHCCCEEEECCCCCCCCCCCEEEEEECCCCHHHHCCCCCEEEEECHHHH
NQVMKQLEAAGVPVEKGEVAMVPTTTVAVSGEEAEQLMRLLDLLEEHDDVQNVYTNADIS
HHHHHHHHHCCCCCCCCCEEEECCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
EA
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA