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The map label for this gene is yhjK

Identifier: 51598126

GI number: 51598126

Start: 4579817

End: 4582003

Strand: Reverse

Name: yhjK

Synonym: YPTB3836

Alternate gene names: 51598126

Gene position: 4582003-4579817 (Counterclockwise)

Preceding gene: 51598127

Following gene: 51598125

Centisome position: 96.57

GC content: 47.69

Gene sequence:

>2187_bases
ATGGCGTTCCTAATAGGAAAAGACCGAAACCCACATTATTCTTGCCTTCCATTAGAGTATCGCAAGATAAAATCGGCAAG
CGATCGAGTATACTCAGACAGAATCGACGAGTGGTTAGAGGATAGTAACAACCACCTTATTTTATGCAGTCGGAATTGGC
GGAGAACGAGTTTGCGGGTAAGGCGCTCATTAACGATTAAACAAATGGCAGCGGTGGCAGTAGTTGCACTGGTGACTATC
TGTATTTTTATCATCCTTCAGTTGTTCCACTTTGTGCAACAGCGTAAAGATGATTATGCCAACCAGTTGGAAAGTATTGC
TTATTCGGTTCGCCAACCCCTATCTGAGGCCATACTCAGCGTTGATATTCCACAAGCTAAAAAAATCCTCAACAGCCTAT
TACCTATTGGTATTCTTAGCCGTGCTGAAGTGATATTACCGAACCAAATACAGGTATTGCACGCAAATTTTCCAACAGAG
CGGCCCATTCCACACTGGGCCAAGCGGGTTTTCTCCTTGCCCGTACAGATAACCGTGCCTTTATATGCGTTGGAACGGGT
ACCCGCAAACCCTCAGCCCTTAGCGCATTTAGTCCTGCGTGCTGACTCTTTCCGTATGTATCAATTTATTCTCAGCGCTC
TGTCAGCCATGCTCTCAACATATTTGTTACTGGCATTGGTGTTATCGGTATCTATCGCTTGGTGTATTAATCGCCTGATT
ATTCACCCGCTGCGGGCAATGGCCAAAGAGCTGGAGGATATTGGTGACCACGGGGTGCTGCATCATCAACTGACGCTACC
GGCGCATCATCAGGATGATGAACTGGGTGTGTTGGTGCGTAATTACAACCGCAATCAGCAACTGTTAGCGGATGCCTATG
CTGATATGGGCCGCATTAGTCACCGTTTCCCGGTGACTGAATTGCCCAATCGGTCATTATTTATCAGCCTGCTGGAGAAA
GAAATTGCCTCCAGTACGCGTACAGATCACTTTCATCTGTTGGTGATTGGTATTGAAACCCTGCAAGAGGTTTCTGGCGC
CATGAGTGAAGCCCAGCACCAACAGTTATTGTTGACGATAGTACAGCGGATCGAGCAGTGCATTGATGACAGCAACCTGT
TAGCGCAACTGAGTAAAACTGAATTTGCCGTGTTAGCCAGAGGTACCCCCCGCTCATTCCCAGCCATGCAATTGGCTCGG
CGGATTATGTCGCAAGTGACCCAACCGCTGTTTTTCGACGAGATAACATTGCGCCCCAGTGCCAGTATTGGTATCACCCG
CTATCAGGCTCAACAGGACACTGCCGAATCCATGATGCGCAATGCCAGTACAGCAATGATGGCGGCTCATCATGAGGGGC
GTAATCAGATAATGGTATTTGAGCCTCATTTGATTGAAAAAACGCACAAGCGGCTGACGCAGGAAAATGACCTCTTACAG
GCGATTGAAAACCACGATTTCACGTTATTCTTACAACCTCAATGGGATATGAAGCGCCAGCAGGTTATCGGTGCGGAGGC
GCTACTGCGTTGGTGCCAACCAGATGGCAGCTACGTTTTACCGTCAGGCTTTGTTCACTTCGCCGAAGAGGAGGGGATGA
TGGTGCCACTGGGGAACTGGGTGCTAGAAGAAGCCTGCCGTATTCTGGCTGATTGGAAAGCACGCGGTGTTAGCCTGCCG
TTATCGGTGAATATATCGGGCTTACAGGTACAAAATAAACAGTTCTTGCCGCATTTGAAAACGCTCATTAGCCACTATCA
TATTGATCCACAAAAATTGTTACTGGAAATTACCGAAACTGCCCAGATTCAGGATCTCGATGAAGCATTGAGGCTACTGC
GTGAGTTACAGGGGCTGGGGTTATTGATCGCGTTAGATGATTTTGGTATTGGCTACTCAAGCTTACGGTATCTTAACCAC
CTGAAAAGCTTGCCTATCCATATGATTAAGTTGGATAAGAGCTTTGTGAAAAATTTGCCAGAGGATGACGCGATAGCGCG
CATTATTAGCTGTGTTTCTGATGTACTAAAGGTACGTGTGATGGCCGAAGGGGTCGAAACAGAAGAGCAGCGCCAATGGT
TGCTAGAGCATGGCATTCAATGCTGCCAAGGCTTCCTTTTCTCTCCGCCACTGCCACGTGCAGAATTTGAAGCCCAGTAT
TTCAGCAGCGCTCACCACGTAAGTTAA

Upstream 100 bases:

>100_bases
CTTAAGGGATCACAACTTACTCGATGGGGACTAAAAAGGGGCGTCTAAACACCAAGCACTTGAACACCAAACGTCTGAAC
ACCAAAAACAGTACTGCGAA

Downstream 100 bases:

>100_bases
CTCTTTGTATGGCGGTGTCCACCAGCAGTACTTAACTCGCCGAGAATCTGCAGTGAATGACCGCCTACCCACCGTCAATT
CTGACGACAGCCGATGACGC

Product: biofilm formation regulator HmsP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 728; Mature: 727

Protein sequence:

>728_residues
MAFLIGKDRNPHYSCLPLEYRKIKSASDRVYSDRIDEWLEDSNNHLILCSRNWRRTSLRVRRSLTIKQMAAVAVVALVTI
CIFIILQLFHFVQQRKDDYANQLESIAYSVRQPLSEAILSVDIPQAKKILNSLLPIGILSRAEVILPNQIQVLHANFPTE
RPIPHWAKRVFSLPVQITVPLYALERVPANPQPLAHLVLRADSFRMYQFILSALSAMLSTYLLLALVLSVSIAWCINRLI
IHPLRAMAKELEDIGDHGVLHHQLTLPAHHQDDELGVLVRNYNRNQQLLADAYADMGRISHRFPVTELPNRSLFISLLEK
EIASSTRTDHFHLLVIGIETLQEVSGAMSEAQHQQLLLTIVQRIEQCIDDSNLLAQLSKTEFAVLARGTPRSFPAMQLAR
RIMSQVTQPLFFDEITLRPSASIGITRYQAQQDTAESMMRNASTAMMAAHHEGRNQIMVFEPHLIEKTHKRLTQENDLLQ
AIENHDFTLFLQPQWDMKRQQVIGAEALLRWCQPDGSYVLPSGFVHFAEEEGMMVPLGNWVLEEACRILADWKARGVSLP
LSVNISGLQVQNKQFLPHLKTLISHYHIDPQKLLLEITETAQIQDLDEALRLLRELQGLGLLIALDDFGIGYSSLRYLNH
LKSLPIHMIKLDKSFVKNLPEDDAIARIISCVSDVLKVRVMAEGVETEEQRQWLLEHGIQCCQGFLFSPPLPRAEFEAQY
FSSAHHVS

Sequences:

>Translated_728_residues
MAFLIGKDRNPHYSCLPLEYRKIKSASDRVYSDRIDEWLEDSNNHLILCSRNWRRTSLRVRRSLTIKQMAAVAVVALVTI
CIFIILQLFHFVQQRKDDYANQLESIAYSVRQPLSEAILSVDIPQAKKILNSLLPIGILSRAEVILPNQIQVLHANFPTE
RPIPHWAKRVFSLPVQITVPLYALERVPANPQPLAHLVLRADSFRMYQFILSALSAMLSTYLLLALVLSVSIAWCINRLI
IHPLRAMAKELEDIGDHGVLHHQLTLPAHHQDDELGVLVRNYNRNQQLLADAYADMGRISHRFPVTELPNRSLFISLLEK
EIASSTRTDHFHLLVIGIETLQEVSGAMSEAQHQQLLLTIVQRIEQCIDDSNLLAQLSKTEFAVLARGTPRSFPAMQLAR
RIMSQVTQPLFFDEITLRPSASIGITRYQAQQDTAESMMRNASTAMMAAHHEGRNQIMVFEPHLIEKTHKRLTQENDLLQ
AIENHDFTLFLQPQWDMKRQQVIGAEALLRWCQPDGSYVLPSGFVHFAEEEGMMVPLGNWVLEEACRILADWKARGVSLP
LSVNISGLQVQNKQFLPHLKTLISHYHIDPQKLLLEITETAQIQDLDEALRLLRELQGLGLLIALDDFGIGYSSLRYLNH
LKSLPIHMIKLDKSFVKNLPEDDAIARIISCVSDVLKVRVMAEGVETEEQRQWLLEHGIQCCQGFLFSPPLPRAEFEAQY
FSSAHHVS
>Mature_727_residues
AFLIGKDRNPHYSCLPLEYRKIKSASDRVYSDRIDEWLEDSNNHLILCSRNWRRTSLRVRRSLTIKQMAAVAVVALVTIC
IFIILQLFHFVQQRKDDYANQLESIAYSVRQPLSEAILSVDIPQAKKILNSLLPIGILSRAEVILPNQIQVLHANFPTER
PIPHWAKRVFSLPVQITVPLYALERVPANPQPLAHLVLRADSFRMYQFILSALSAMLSTYLLLALVLSVSIAWCINRLII
HPLRAMAKELEDIGDHGVLHHQLTLPAHHQDDELGVLVRNYNRNQQLLADAYADMGRISHRFPVTELPNRSLFISLLEKE
IASSTRTDHFHLLVIGIETLQEVSGAMSEAQHQQLLLTIVQRIEQCIDDSNLLAQLSKTEFAVLARGTPRSFPAMQLARR
IMSQVTQPLFFDEITLRPSASIGITRYQAQQDTAESMMRNASTAMMAAHHEGRNQIMVFEPHLIEKTHKRLTQENDLLQA
IENHDFTLFLQPQWDMKRQQVIGAEALLRWCQPDGSYVLPSGFVHFAEEEGMMVPLGNWVLEEACRILADWKARGVSLPL
SVNISGLQVQNKQFLPHLKTLISHYHIDPQKLLLEITETAQIQDLDEALRLLRELQGLGLLIALDDFGIGYSSLRYLNHL
KSLPIHMIKLDKSFVKNLPEDDAIARIISCVSDVLKVRVMAEGVETEEQRQWLLEHGIQCCQGFLFSPPLPRAEFEAQYF
SSAHHVS

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HAMP domain [H]

Homologues:

Organism=Escherichia coli, GI226510982, Length=664, Percent_Identity=48.4939759036145, Blast_Score=627, Evalue=0.0,
Organism=Escherichia coli, GI1787541, Length=422, Percent_Identity=32.2274881516588, Blast_Score=226, Evalue=5e-60,
Organism=Escherichia coli, GI87081921, Length=417, Percent_Identity=31.4148681055156, Blast_Score=196, Evalue=4e-51,
Organism=Escherichia coli, GI1790496, Length=244, Percent_Identity=35.655737704918, Blast_Score=160, Evalue=3e-40,
Organism=Escherichia coli, GI87081743, Length=252, Percent_Identity=33.7301587301587, Blast_Score=153, Evalue=3e-38,
Organism=Escherichia coli, GI87081845, Length=251, Percent_Identity=34.6613545816733, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI87081980, Length=258, Percent_Identity=32.9457364341085, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI1786507, Length=251, Percent_Identity=31.0756972111554, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1788502, Length=250, Percent_Identity=31.2, Blast_Score=125, Evalue=1e-29,
Organism=Escherichia coli, GI1788849, Length=425, Percent_Identity=25.8823529411765, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI87082096, Length=422, Percent_Identity=24.4075829383886, Blast_Score=108, Evalue=2e-24,
Organism=Escherichia coli, GI1787055, Length=241, Percent_Identity=28.6307053941909, Blast_Score=99, Evalue=7e-22,
Organism=Escherichia coli, GI1787410, Length=123, Percent_Identity=31.7073170731707, Blast_Score=66, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003660 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF00672 HAMP [H]

EC number: NA

Molecular weight: Translated: 82951; Mature: 82820

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: PS50885 HAMP ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFLIGKDRNPHYSCLPLEYRKIKSASDRVYSDRIDEWLEDSNNHLILCSRNWRRTSLRV
CEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
RRSLTIKQMAAVAVVALVTICIFIILQLFHFVQQRKDDYANQLESIAYSVRQPLSEAILS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VDIPQAKKILNSLLPIGILSRAEVILPNQIQVLHANFPTERPIPHWAKRVFSLPVQITVP
CCCHHHHHHHHHHCCHHHHCCCCEECCCCEEEEECCCCCCCCCHHHHHHHHCCCCEEEEH
LYALERVPANPQPLAHLVLRADSFRMYQFILSALSAMLSTYLLLALVLSVSIAWCINRLI
HHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IHPLRAMAKELEDIGDHGVLHHQLTLPAHHQDDELGVLVRNYNRNQQLLADAYADMGRIS
HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHC
HRFPVTELPNRSLFISLLEKEIASSTRTDHFHLLVIGIETLQEVSGAMSEAQHQQLLLTI
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
VQRIEQCIDDSNLLAQLSKTEFAVLARGTPRSFPAMQLARRIMSQVTQPLFFDEITLRPS
HHHHHHHHCCHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHCCCHHHHCEEECCC
ASIGITRYQAQQDTAESMMRNASTAMMAAHHEGRNQIMVFEPHLIEKTHKRLTQENDLLQ
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHH
AIENHDFTLFLQPQWDMKRQQVIGAEALLRWCQPDGSYVLPSGFVHFAEEEGMMVPLGNW
HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCEEECCCCCCEEECHHH
VLEEACRILADWKARGVSLPLSVNISGLQVQNKQFLPHLKTLISHYHIDPQKLLLEITET
HHHHHHHHHHHHHHCCCCCEEEECCCCEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
AQIQDLDEALRLLRELQGLGLLIALDDFGIGYSSLRYLNHLKSLPIHMIKLDKSFVKNLP
HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHCCHHEEEECHHHHHCCC
EDDAIARIISCVSDVLKVRVMAEGVETEEQRQWLLEHGIQCCQGFLFSPPLPRAEFEAQY
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
FSSAHHVS
HCCCCCCC
>Mature Secondary Structure 
AFLIGKDRNPHYSCLPLEYRKIKSASDRVYSDRIDEWLEDSNNHLILCSRNWRRTSLRV
EEEEECCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
RRSLTIKQMAAVAVVALVTICIFIILQLFHFVQQRKDDYANQLESIAYSVRQPLSEAILS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VDIPQAKKILNSLLPIGILSRAEVILPNQIQVLHANFPTERPIPHWAKRVFSLPVQITVP
CCCHHHHHHHHHHCCHHHHCCCCEECCCCEEEEECCCCCCCCCHHHHHHHHCCCCEEEEH
LYALERVPANPQPLAHLVLRADSFRMYQFILSALSAMLSTYLLLALVLSVSIAWCINRLI
HHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IHPLRAMAKELEDIGDHGVLHHQLTLPAHHQDDELGVLVRNYNRNQQLLADAYADMGRIS
HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHC
HRFPVTELPNRSLFISLLEKEIASSTRTDHFHLLVIGIETLQEVSGAMSEAQHQQLLLTI
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
VQRIEQCIDDSNLLAQLSKTEFAVLARGTPRSFPAMQLARRIMSQVTQPLFFDEITLRPS
HHHHHHHHCCHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHCCCHHHHCEEECCC
ASIGITRYQAQQDTAESMMRNASTAMMAAHHEGRNQIMVFEPHLIEKTHKRLTQENDLLQ
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHH
AIENHDFTLFLQPQWDMKRQQVIGAEALLRWCQPDGSYVLPSGFVHFAEEEGMMVPLGNW
HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCEEECCCCCCEEECHHH
VLEEACRILADWKARGVSLPLSVNISGLQVQNKQFLPHLKTLISHYHIDPQKLLLEITET
HHHHHHHHHHHHHHCCCCCEEEECCCCEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
AQIQDLDEALRLLRELQGLGLLIALDDFGIGYSSLRYLNHLKSLPIHMIKLDKSFVKNLP
HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHCCHHEEEECHHHHHCCC
EDDAIARIISCVSDVLKVRVMAEGVETEEQRQWLLEHGIQCCQGFLFSPPLPRAEFEAQY
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
FSSAHHVS
HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 10493123 [H]