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The map label for this gene is yjcD

Identifier: 51597891

GI number: 51597891

Start: 4283573

End: 4284928

Strand: Reverse

Name: yjcD

Synonym: YPTB3600

Alternate gene names: 51597891

Gene position: 4284928-4283573 (Counterclockwise)

Preceding gene: 51597893

Following gene: 51597890

Centisome position: 90.31

GC content: 53.24

Gene sequence:

>1356_bases
ATGTCTAGCAGCAACCCTCAAGCACAGCCAAAGGGCACGCTTGATGCATTCTTTAAGCTTAGTGAACGTGGCAGTAATGT
ACGCCAAGAAGTGCTGGCCGGTCTGACGACTTTTCTGGCGATGGTTTATTCGGTGATTGTGGTACCGAGTATGCTAGGCA
AAGCCGGTTTCCCACCGACGGCGGTGTTTGTCGCGACCTGCCTGGTTGCGGGTCTCGGTTCTCTGTTGATGGGTCTGTGG
GCTAACCTGCCAATGGCTATCGGTTGTGCCATCTCACTGACAGCATTTACCGCGTTCAGTCTGGTATTGGGCCAGCAAAT
CAGTATCCCAGTGGCATTGGGTGCGGTCTTCCTGATGGGGGTGCTGTTTACCATTATCTCAGTAACCGGTATCCGTTCGT
GGATCCTGCGTAACTTGCCAATGGGGGTTGCGCACGGTACGGGCATCGGTATTGGTCTGTTCTTGCTGTTGATTGCCGCA
AACGGTGTCGGCTTGGTTATCAAAAACCCGATTGAAGGTTTACCGGTCGCGTTGGGGGCATTTACCTCTTTCCCGGTGAT
AATGACCTTGCTGGGTCTGGCCGTGATTTTTGGTCTGGAGAAACTGCGAGTGCCGGGGGGGATTTTACTGGTGATTATCG
CCATCTCGGTGATCGGCCTGATTTTTGATCCAAGCGTGACCTATCAGGGTCTGTTCGCGATGCCAAGTCTGGCGGATGCT
AACGGCGACTCTTTGATTTTCAGCCTTGATATCATGGGCGCTTTACAACCCGTGGTATTGCCAAGCGTACTGGCGTTAGT
GATGACCGCGGTATTTGATGCGACCGGGACTATCCGCGCGGTTGCGGGGCAGGCTAACTTGTTGGATAAAGACGGCCAAA
TCATCAGCGGTGGTAAAGCGCTGACCACTGACTCCGTCAGTAGCATTTTTGCGGGTTTGGTGGGGGCGGCACCGGCGGCG
GTTTATATTGAATCGGCTGCTGGCACTGCAGCGGGCGGCAAAACTGGTTTGACGGCGACGGTGGTCGGTATCCTGTTCCT
GTTGATTTTGTTCCTCTCGCCGCTGTCGTATTTGGTTCCGGCTTATGCCACCGCTCCGGCGCTGATGTATGTTGGCTTGC
TGATGCTAAGCAATGTATCCAAACTGGATTTCGAGGACTTTGTTGATGCCATGTCCGGCCTACTGTGTGCGGTATTTATC
GTACTGACCTGCAATATCGTCACCGGTATTATGTTGGGCTTTAGCTCACTGGTTATTGGCCGGGTTTGCTCTGGTGAATG
GCGCAAACTGAACGTCGGTACGGTGATTATTGCGGTTGCACTGGTTGCATTCTACGCAGGTGGTTGGGCAATTTAA

Upstream 100 bases:

>100_bases
GGAGAGTTAGTGAGTTCATCGACAGGAACGGAAACGATTACGTAGGGAAGGGCGCTTGGCTTGGCATGCTATTTTAAAAT
GACACACAGGGGACATCACC

Downstream 100 bases:

>100_bases
GCCCACAGGGATTGCGAATGTTTGTAATGGTGGATGTTTGTAATGGTGGATGTTTGTAATGGTAGATACTTGTAATGGTG
GATACTTGTCATCATGGCCA

Product: xanthine/uracil permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 451; Mature: 450

Protein sequence:

>451_residues
MSSSNPQAQPKGTLDAFFKLSERGSNVRQEVLAGLTTFLAMVYSVIVVPSMLGKAGFPPTAVFVATCLVAGLGSLLMGLW
ANLPMAIGCAISLTAFTAFSLVLGQQISIPVALGAVFLMGVLFTIISVTGIRSWILRNLPMGVAHGTGIGIGLFLLLIAA
NGVGLVIKNPIEGLPVALGAFTSFPVIMTLLGLAVIFGLEKLRVPGGILLVIIAISVIGLIFDPSVTYQGLFAMPSLADA
NGDSLIFSLDIMGALQPVVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDGQIISGGKALTTDSVSSIFAGLVGAAPAA
VYIESAAGTAAGGKTGLTATVVGILFLLILFLSPLSYLVPAYATAPALMYVGLLMLSNVSKLDFEDFVDAMSGLLCAVFI
VLTCNIVTGIMLGFSSLVIGRVCSGEWRKLNVGTVIIAVALVAFYAGGWAI

Sequences:

>Translated_451_residues
MSSSNPQAQPKGTLDAFFKLSERGSNVRQEVLAGLTTFLAMVYSVIVVPSMLGKAGFPPTAVFVATCLVAGLGSLLMGLW
ANLPMAIGCAISLTAFTAFSLVLGQQISIPVALGAVFLMGVLFTIISVTGIRSWILRNLPMGVAHGTGIGIGLFLLLIAA
NGVGLVIKNPIEGLPVALGAFTSFPVIMTLLGLAVIFGLEKLRVPGGILLVIIAISVIGLIFDPSVTYQGLFAMPSLADA
NGDSLIFSLDIMGALQPVVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDGQIISGGKALTTDSVSSIFAGLVGAAPAA
VYIESAAGTAAGGKTGLTATVVGILFLLILFLSPLSYLVPAYATAPALMYVGLLMLSNVSKLDFEDFVDAMSGLLCAVFI
VLTCNIVTGIMLGFSSLVIGRVCSGEWRKLNVGTVIIAVALVAFYAGGWAI
>Mature_450_residues
SSSNPQAQPKGTLDAFFKLSERGSNVRQEVLAGLTTFLAMVYSVIVVPSMLGKAGFPPTAVFVATCLVAGLGSLLMGLWA
NLPMAIGCAISLTAFTAFSLVLGQQISIPVALGAVFLMGVLFTIISVTGIRSWILRNLPMGVAHGTGIGIGLFLLLIAAN
GVGLVIKNPIEGLPVALGAFTSFPVIMTLLGLAVIFGLEKLRVPGGILLVIIAISVIGLIFDPSVTYQGLFAMPSLADAN
GDSLIFSLDIMGALQPVVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDGQIISGGKALTTDSVSSIFAGLVGAAPAAV
YIESAAGTAAGGKTGLTATVVGILFLLILFLSPLSYLVPAYATAPALMYVGLLMLSNVSKLDFEDFVDAMSGLLCAVFIV
LTCNIVTGIMLGFSSLVIGRVCSGEWRKLNVGTVIIAVALVAFYAGGWAI

Specific function: Unknown

COG id: COG2252

COG function: function code R; Permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine/uracil permease family. AzgA purine transporter (TC 2.A.1.40) subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790499, Length=448, Percent_Identity=85.2678571428571, Blast_Score=753, Evalue=0.0,
Organism=Escherichia coli, GI48994909, Length=449, Percent_Identity=86.8596881959911, Blast_Score=743, Evalue=0.0,
Organism=Escherichia coli, GI87082309, Length=440, Percent_Identity=38.8636363636364, Blast_Score=295, Evalue=5e-81,
Organism=Escherichia coli, GI1790150, Length=442, Percent_Identity=36.1990950226244, Blast_Score=254, Evalue=8e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006043 [H]

Pfam domain/function: PF00860 Xan_ur_permease [H]

EC number: NA

Molecular weight: Translated: 46263; Mature: 46132

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCCCCCEEECHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SSSNPQAQPKGTLDAFFKLSERGSNVRQEVLAGLTTFLAMVYSVIVVPSMLGKAGFPPT
CCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
AVFVATCLVAGLGSLLMGLWANLPMAIGCAISLTAFTAFSLVLGQQISIPVALGAVFLMG
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
VLFTIISVTGIRSWILRNLPMGVAHGTGIGIGLFLLLIAANGVGLVIKNPIEGLPVALGA
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHH
FTSFPVIMTLLGLAVIFGLEKLRVPGGILLVIIAISVIGLIFDPSVTYQGLFAMPSLADA
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCC
NGDSLIFSLDIMGALQPVVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDGQIISGGKA
CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCEEECCCE
LTTDSVSSIFAGLVGAAPAAVYIESAAGTAAGGKTGLTATVVGILFLLILFLSPLSYLVP
ECHHHHHHHHHHHHHCCCHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AYATAPALMYVGLLMLSNVSKLDFEDFVDAMSGLLCAVFIVLTCNIVTGIMLGFSSLVIG
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RVCSGEWRKLNVGTVIIAVALVAFYAGGWAI
HHCCCCCEEECHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]