| Definition | Yersinia pseudotuberculosis IP 32953, complete genome. |
|---|---|
| Accession | NC_006155 |
| Length | 4,744,671 |
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The map label for this gene is rhsD [C]
Identifier: 51597848
GI number: 51597848
Start: 4230131
End: 4232989
Strand: Direct
Name: rhsD [C]
Synonym: YPTB3557
Alternate gene names: 51597848
Gene position: 4230131-4232989 (Clockwise)
Preceding gene: 51597847
Following gene: 51597858
Centisome position: 89.16
GC content: 47.64
Gene sequence:
>2859_bases ATGCCTAATACGTCACCCACTGATCTGTGCGCCAACACCCCCAGTATCACCATCCACGATAACCGGGGGTTCGCTATCAT CGCACTAGCCTATAATCGTACCGATACCCACCAAACGCCCGAACAACTCATTAACTGCAATCGCTATAACGCCTTCGGTC AGCTAATCGCCAGCCGCGATCCGCGCCTTGAGGTGGATAATTTCCGCTATCAATACAGCCTCAGCGGTGTTCCACTGCGT ACCGACAGCGTCGATAGCGGCAGTACGCTGCAACTGGCAGATAGTGCTGGCCGCACGGTGCTCTCGCAGGATGCACACCA CACCCACCGCTGGGTAGAGTATGAGACCGGTGAACACAGTTTAGGCCGCCCGCTAAGTTACAGCGAGCAAGCCAACGGCG GCCTGAAAACGGTTACCGACCGCTTTTTCTATGGCGAAAATAGCGAGCAGGATAAAAGCGGCAATCTGAACGGCCAGTGT GTACGCCATTACGACAGCGCCGGTTTACGGGCACTGATTAGCCAGTCGATTATTGGCGTGCCATTGCAGCAACAGCGCCG TCTGTTGACGGATATCAAAGGCCCGGTTGACTGGTTTGGCGAAAAGGAGAACTGGGGCGTTCGCCTGAATGAACAGCCGT TTGTTAGCCATAGCACCACCGATGCTCTCGGCCAGTTAATCACGCAAACCGATGCCAAAGGCCATATCCAGCGCATGGCC TATAACCGCGCCGGACAACTTATCGGTTCGTGGCTAACAGTAAAAAATGGTGCTGAACAGGTGATCCTCCGTTCACTCAC CTATTCGGCCGCCGGGCAAAAACTGCGTGAAGAGAGCGGCAACGGGGTAATTACCGAATACCGTTATGAACCCCAGACTC AGCGTTTAATCGGCATTAAAACCACCCGCCCGGCGAAGAAAGACCGCCCCCCCCTGTTACAAGACCTGCGTTACGATTAT GACCCGGTCGGGAATATTCTCGCCATCCATAATGACGCCGAAGCCACCCGCTTCTACCGTAATCAGAAAATCGTACCGGA AACCACTTACCGCTACGATGCACTGTATCAGCTTATCGAGGCCACTGGCCGTGAAGCGGATACCAACGGCATACAAAATA GCCAGTTACCCGCGCTGGCGTTACTGAACGACAGCAACCAGTTTGTCAACTACACCCGCCGCTACCACTATGACCGCGCC GGTAATCTGCTGAAGATACAGCATACCGGTGCCAGCCAATACAGTACCCATATCACGGTGTCCGATTCATCCAATCACGG CATTCAGCAACAAGATGGCATCACCGCCCGTGATATTCGCTCCCAGTTTGATGCGGCGGGTAATCAGCAACAACTGCAAC CCGGTCAGCCCCTGCGCTGGAACAGCCGCAATCAGTTACAGCAGGTGGAACCCGTGCCCCGCAACGATGGCATCAGTGAC AGCGAAAGTTATCTCTATGATGGTGGCGGTAGCCGGGTGGTCAAAACCAGTCTCCATAAAACCCATAACGCAATCCAAAC CCGTTCAGTCATTTATTTAGCGGGACTGGAACTGCGTAGCCAATATAATGGCAATAATCTGACAGAAGATTTTCAGGTGA TAACAGTGGGTGCCGCGGGCCGTGCTCAGGTACGGGTATTACACTGGGAGAGCGGCCAACCCGTTGATATCGTCAATGAC CAACTGCGTTACAGTTTCGATAATCACATTGGCTCGGCGTTAATCGAATTAGACAGCGACGGAGATATTATCAGCCAGGA AGAATATTACCCATTTGGCGGCACCGCGGTTTTGGCCTCCCGTAATACCGTGGAAGCCAAATATAAAACCGTTCGTTATT CCGGTAAAGAGCGCGATGCCACCGGGCTGTATTATTATGGTTACCGTTATTACCAACCGTGGCTGGGCCGATGGTTAAGC GCTGACCCCGCAGGCACTATAGACGGACTGAATTTATACCGAATGGTGAGGAATAATCCAATCAGATTGCGCGATAACAA TGGGCTGTTAACCGAAGAGCAAATTGATATGTACGTTAATTTGCTTAGTAATATTGGATTAAAAAATGATGATGAATTAA AGAGTGAACTATTAAGATATGGTTTGAGCGAAGAAGAGCAAGACCAGATATATTTAAATATGCCAATGTTTACGCAGCCT GGATCATCAAGCTCATCAGCCACGTCCCTTTCTGAGAATAGTTCCAGTTCTGGGAGCACGCAAAGTGCTGATTCAGGTTA TCTCAGTCCAGTAAGAAACTATCATTTTTTTGAAGATATTAATTTAGTGACAATGCACCGCCCCTATCCAAAAGAAAAAG TCTCTAGTGAAGAAATAATATCTGCAGCAGCAGAGTTAAAAGAAGTTAGTCCTATAGATACTCTAATTAGTTTGGATTTG ACCAGTGAAAACCTCCAATCGTATCAATCAGCGCTTGCCGATGAAGGAATTGACTATATCACTAAAGAAAAATATGAAAT AAAGGATTTTTTTGAAGAAGGAGATTTATCGACTGAACAAATAGATCTGACAGTAAATAAAATATTAACATTACAAGAAA GTGCTATTGTTGGGGTTCATTGTGGAGCAGGTAATGGAAGAAGTGGGATTATTGCATCAGCATTAGCCATTAATAAACTG TATGCAACAAATGAAGTAAGTAGTTTTGACGCAACTCATTCATTAGGAGGGACAATGCATTTAAAAACAGACACATACCA AGTTGATATTGTAACAGCCAGTGCGGTTGGGATTATCAGAAAAATAAATCCTAAAGCAGTGGAACGTGATGAGGATGTTT CCGTCCTATATGACTATTCTTATTTGTTATATACAAGACAACACTCTACATCATTATAA
Upstream 100 bases:
>100_bases GATTTCACAACGATAGACTTAGCAACGACAGACTTAACAACGACAGGCTCCACAACGTTAGATTTCACAACAGTAAAATA ACTCGTTAAGGAATAATTTT
Downstream 100 bases:
>100_bases TTTATTAATTCGAGGCACCTTCCCTACTTGAATAGGGAAGGTGTCTATACCCGTAATACTGATTTTTAAAATCGCTGATA CTGACAGCAGCATTGGCGAA
Product: insecticidal toxin
Products: NA
Alternate protein names: Insecticidal xin Complex; Insecticidal xin Protein; Insecticidal xin Complex Protein; C Component Of Insecticidal xin Complex; Rhs Family Protein-Like Protein; YD Repeat Protein; Insecticidal xin; Zinc Finger C2H2-Type Domain-Containing Protein; FG-GAP Repeat Protein; Insecticidal xin SepC/Tcc Class; Insecticidal xin SepC/TccC; Rhs Family Protein; Insecticial xin; Insecticidal xin Complex Protein TcaC; Insecticidal xin Complex TccC; Insecticidal xin Complex-Like Protein; Insecticial xin Complex; Insecticidal xin Complex Protein Tccc
Number of amino acids: Translated: 952; Mature: 951
Protein sequence:
>952_residues MPNTSPTDLCANTPSITIHDNRGFAIIALAYNRTDTHQTPEQLINCNRYNAFGQLIASRDPRLEVDNFRYQYSLSGVPLR TDSVDSGSTLQLADSAGRTVLSQDAHHTHRWVEYETGEHSLGRPLSYSEQANGGLKTVTDRFFYGENSEQDKSGNLNGQC VRHYDSAGLRALISQSIIGVPLQQQRRLLTDIKGPVDWFGEKENWGVRLNEQPFVSHSTTDALGQLITQTDAKGHIQRMA YNRAGQLIGSWLTVKNGAEQVILRSLTYSAAGQKLREESGNGVITEYRYEPQTQRLIGIKTTRPAKKDRPPLLQDLRYDY DPVGNILAIHNDAEATRFYRNQKIVPETTYRYDALYQLIEATGREADTNGIQNSQLPALALLNDSNQFVNYTRRYHYDRA GNLLKIQHTGASQYSTHITVSDSSNHGIQQQDGITARDIRSQFDAAGNQQQLQPGQPLRWNSRNQLQQVEPVPRNDGISD SESYLYDGGGSRVVKTSLHKTHNAIQTRSVIYLAGLELRSQYNGNNLTEDFQVITVGAAGRAQVRVLHWESGQPVDIVND QLRYSFDNHIGSALIELDSDGDIISQEEYYPFGGTAVLASRNTVEAKYKTVRYSGKERDATGLYYYGYRYYQPWLGRWLS ADPAGTIDGLNLYRMVRNNPIRLRDNNGLLTEEQIDMYVNLLSNIGLKNDDELKSELLRYGLSEEEQDQIYLNMPMFTQP GSSSSSATSLSENSSSSGSTQSADSGYLSPVRNYHFFEDINLVTMHRPYPKEKVSSEEIISAAAELKEVSPIDTLISLDL TSENLQSYQSALADEGIDYITKEKYEIKDFFEEGDLSTEQIDLTVNKILTLQESAIVGVHCGAGNGRSGIIASALAINKL YATNEVSSFDATHSLGGTMHLKTDTYQVDIVTASAVGIIRKINPKAVERDEDVSVLYDYSYLLYTRQHSTSL
Sequences:
>Translated_952_residues MPNTSPTDLCANTPSITIHDNRGFAIIALAYNRTDTHQTPEQLINCNRYNAFGQLIASRDPRLEVDNFRYQYSLSGVPLR TDSVDSGSTLQLADSAGRTVLSQDAHHTHRWVEYETGEHSLGRPLSYSEQANGGLKTVTDRFFYGENSEQDKSGNLNGQC VRHYDSAGLRALISQSIIGVPLQQQRRLLTDIKGPVDWFGEKENWGVRLNEQPFVSHSTTDALGQLITQTDAKGHIQRMA YNRAGQLIGSWLTVKNGAEQVILRSLTYSAAGQKLREESGNGVITEYRYEPQTQRLIGIKTTRPAKKDRPPLLQDLRYDY DPVGNILAIHNDAEATRFYRNQKIVPETTYRYDALYQLIEATGREADTNGIQNSQLPALALLNDSNQFVNYTRRYHYDRA GNLLKIQHTGASQYSTHITVSDSSNHGIQQQDGITARDIRSQFDAAGNQQQLQPGQPLRWNSRNQLQQVEPVPRNDGISD SESYLYDGGGSRVVKTSLHKTHNAIQTRSVIYLAGLELRSQYNGNNLTEDFQVITVGAAGRAQVRVLHWESGQPVDIVND QLRYSFDNHIGSALIELDSDGDIISQEEYYPFGGTAVLASRNTVEAKYKTVRYSGKERDATGLYYYGYRYYQPWLGRWLS ADPAGTIDGLNLYRMVRNNPIRLRDNNGLLTEEQIDMYVNLLSNIGLKNDDELKSELLRYGLSEEEQDQIYLNMPMFTQP GSSSSSATSLSENSSSSGSTQSADSGYLSPVRNYHFFEDINLVTMHRPYPKEKVSSEEIISAAAELKEVSPIDTLISLDL TSENLQSYQSALADEGIDYITKEKYEIKDFFEEGDLSTEQIDLTVNKILTLQESAIVGVHCGAGNGRSGIIASALAINKL YATNEVSSFDATHSLGGTMHLKTDTYQVDIVTASAVGIIRKINPKAVERDEDVSVLYDYSYLLYTRQHSTSL >Mature_951_residues PNTSPTDLCANTPSITIHDNRGFAIIALAYNRTDTHQTPEQLINCNRYNAFGQLIASRDPRLEVDNFRYQYSLSGVPLRT DSVDSGSTLQLADSAGRTVLSQDAHHTHRWVEYETGEHSLGRPLSYSEQANGGLKTVTDRFFYGENSEQDKSGNLNGQCV RHYDSAGLRALISQSIIGVPLQQQRRLLTDIKGPVDWFGEKENWGVRLNEQPFVSHSTTDALGQLITQTDAKGHIQRMAY NRAGQLIGSWLTVKNGAEQVILRSLTYSAAGQKLREESGNGVITEYRYEPQTQRLIGIKTTRPAKKDRPPLLQDLRYDYD PVGNILAIHNDAEATRFYRNQKIVPETTYRYDALYQLIEATGREADTNGIQNSQLPALALLNDSNQFVNYTRRYHYDRAG NLLKIQHTGASQYSTHITVSDSSNHGIQQQDGITARDIRSQFDAAGNQQQLQPGQPLRWNSRNQLQQVEPVPRNDGISDS ESYLYDGGGSRVVKTSLHKTHNAIQTRSVIYLAGLELRSQYNGNNLTEDFQVITVGAAGRAQVRVLHWESGQPVDIVNDQ LRYSFDNHIGSALIELDSDGDIISQEEYYPFGGTAVLASRNTVEAKYKTVRYSGKERDATGLYYYGYRYYQPWLGRWLSA DPAGTIDGLNLYRMVRNNPIRLRDNNGLLTEEQIDMYVNLLSNIGLKNDDELKSELLRYGLSEEEQDQIYLNMPMFTQPG SSSSSATSLSENSSSSGSTQSADSGYLSPVRNYHFFEDINLVTMHRPYPKEKVSSEEIISAAAELKEVSPIDTLISLDLT SENLQSYQSALADEGIDYITKEKYEIKDFFEEGDLSTEQIDLTVNKILTLQESAIVGVHCGAGNGRSGIIASALAINKLY ATNEVSSFDATHSLGGTMHLKTDTYQVDIVTASAVGIIRKINPKAVERDEDVSVLYDYSYLLYTRQHSTSL
Specific function: Rhs Elements Have A Nonessential Function. They May Play An Important Role In The Natural Ecology Of The Cell. [C]
COG id: COG3209
COG function: function code M; Rhs family protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 106507; Mature: 106376
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: PS00383 TYR_PHOSPHATASE_1 ; PS50056 TYR_PHOSPHATASE_2 ; PS00213 LIPOCALIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNTSPTDLCANTPSITIHDNRGFAIIALAYNRTDTHQTPEQLINCNRYNAFGQLIASRD CCCCCCCHHHCCCCEEEEECCCCEEEEEEEECCCCCCCCHHHHHCCCCHHHHHHHHHCCC PRLEVDNFRYQYSLSGVPLRTDSVDSGSTLQLADSAGRTVLSQDAHHTHRWVEYETGEHS CCEEECCEEEEEEECCCEEECCCCCCCCEEEEECCCCCCHHHCCCCCCCEEEEEECCCCC LGRPLSYSEQANGGLKTVTDRFFYGENSEQDKSGNLNGQCVRHYDSAGLRALISQSIIGV CCCCCCCCHHCCCCHHHHHHHEEECCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCC PLQQQRRLLTDIKGPVDWFGEKENWGVRLNEQPFVSHSTTDALGQLITQTDAKGHIQRMA CHHHHHHHHHHCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHH YNRAGQLIGSWLTVKNGAEQVILRSLTYSAAGQKLREESGNGVITEYRYEPQTQRLIGIK HHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEE TTRPAKKDRPPLLQDLRYDYDPVGNILAIHNDAEATRFYRNQKIVPETTYRYDALYQLIE CCCCCCCCCCCHHHHHCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCHHHHHHHHHHHH ATGREADTNGIQNSQLPALALLNDSNQFVNYTRRYHYDRAGNLLKIQHTGASQYSTHITV HCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEE SDSSNHGIQQQDGITARDIRSQFDAAGNQQQLQPGQPLRWNSRNQLQQVEPVPRNDGISD ECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCC SESYLYDGGGSRVVKTSLHKTHNAIQTRSVIYLAGLELRSQYNGNNLTEDFQVITVGAAG CCCEEEECCCCEEEEHHHHHHHHHHHHCCEEEEECCHHHHCCCCCCCCCCEEEEEEECCC RAQVRVLHWESGQPVDIVNDQLRYSFDNHIGSALIELDSDGDIISQEEYYPFGGTAVLAS CEEEEEEEECCCCCHHHHCHHHHHHHHHCCCCEEEEECCCCCEECCCCCCCCCCEEEEEC RNTVEAKYKTVRYSGKERDATGLYYYGYRYYQPWLGRWLSADPAGTIDGLNLYRMVRNNP CCCCEEEEEEEEECCCCCCCCEEEEECEEEECHHHHHHCCCCCCCCCCCHHHHHHHCCCC IRLRDNNGLLTEEQIDMYVNLLSNIGLKNDDELKSELLRYGLSEEEQDQIYLNMPMFTQP EEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCEEECC GSSSSSATSLSENSSSSGSTQSADSGYLSPVRNYHFFEDINLVTMHRPYPKEKVSSEEII CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEECCCEEEEECCCCHHHCCHHHHH SAAAELKEVSPIDTLISLDLTSENLQSYQSALADEGIDYITKEKYEIKDFFEEGDLSTEQ HHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHCCCCCCEE IDLTVNKILTLQESAIVGVHCGAGNGRSGIIASALAINKLYATNEVSSFDATHSLGGTMH EEEEEHHEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHCCCCEEE LKTDTYQVDIVTASAVGIIRKINPKAVERDEDVSVLYDYSYLLYTRQHSTSL EECCEEEEEEEEEHHHHHHHCCCHHHCCCCCCCEEEEEEEEEEEEECCCCCC >Mature Secondary Structure PNTSPTDLCANTPSITIHDNRGFAIIALAYNRTDTHQTPEQLINCNRYNAFGQLIASRD CCCCCCHHHCCCCEEEEECCCCEEEEEEEECCCCCCCCHHHHHCCCCHHHHHHHHHCCC PRLEVDNFRYQYSLSGVPLRTDSVDSGSTLQLADSAGRTVLSQDAHHTHRWVEYETGEHS CCEEECCEEEEEEECCCEEECCCCCCCCEEEEECCCCCCHHHCCCCCCCEEEEEECCCCC LGRPLSYSEQANGGLKTVTDRFFYGENSEQDKSGNLNGQCVRHYDSAGLRALISQSIIGV CCCCCCCCHHCCCCHHHHHHHEEECCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCC PLQQQRRLLTDIKGPVDWFGEKENWGVRLNEQPFVSHSTTDALGQLITQTDAKGHIQRMA CHHHHHHHHHHCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHH YNRAGQLIGSWLTVKNGAEQVILRSLTYSAAGQKLREESGNGVITEYRYEPQTQRLIGIK HHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEE TTRPAKKDRPPLLQDLRYDYDPVGNILAIHNDAEATRFYRNQKIVPETTYRYDALYQLIE CCCCCCCCCCCHHHHHCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCHHHHHHHHHHHH ATGREADTNGIQNSQLPALALLNDSNQFVNYTRRYHYDRAGNLLKIQHTGASQYSTHITV HCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEE SDSSNHGIQQQDGITARDIRSQFDAAGNQQQLQPGQPLRWNSRNQLQQVEPVPRNDGISD ECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCC SESYLYDGGGSRVVKTSLHKTHNAIQTRSVIYLAGLELRSQYNGNNLTEDFQVITVGAAG CCCEEEECCCCEEEEHHHHHHHHHHHHCCEEEEECCHHHHCCCCCCCCCCEEEEEEECCC RAQVRVLHWESGQPVDIVNDQLRYSFDNHIGSALIELDSDGDIISQEEYYPFGGTAVLAS CEEEEEEEECCCCCHHHHCHHHHHHHHHCCCCEEEEECCCCCEECCCCCCCCCCEEEEEC RNTVEAKYKTVRYSGKERDATGLYYYGYRYYQPWLGRWLSADPAGTIDGLNLYRMVRNNP CCCCEEEEEEEEECCCCCCCCEEEEECEEEECHHHHHHCCCCCCCCCCCHHHHHHHCCCC IRLRDNNGLLTEEQIDMYVNLLSNIGLKNDDELKSELLRYGLSEEEQDQIYLNMPMFTQP EEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCEEECC GSSSSSATSLSENSSSSGSTQSADSGYLSPVRNYHFFEDINLVTMHRPYPKEKVSSEEII CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEECCCEEEEECCCCHHHCCHHHHH SAAAELKEVSPIDTLISLDLTSENLQSYQSALADEGIDYITKEKYEIKDFFEEGDLSTEQ HHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHCCCCCCEE IDLTVNKILTLQESAIVGVHCGAGNGRSGIIASALAINKLYATNEVSSFDATHSLGGTMH EEEEEHHEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHCCCCEEE LKTDTYQVDIVTASAVGIIRKINPKAVERDEDVSVLYDYSYLLYTRQHSTSL EECCEEEEEEEEEHHHHHHHCCCHHHCCCCCCCEEEEEEEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA