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The map label for this gene is yqhC [H]

Identifier: 51597684

GI number: 51597684

Start: 4019251

End: 4020144

Strand: Reverse

Name: yqhC [H]

Synonym: YPTB3386

Alternate gene names: 51597684

Gene position: 4020144-4019251 (Counterclockwise)

Preceding gene: 51597687

Following gene: 51597681

Centisome position: 84.73

GC content: 48.99

Gene sequence:

>894_bases
ATGGTTGATGTGATTGATATTCAAGCACAAATGGCAGATAAAATTGCGCGTCTGGCTCAAGGTGATGGTTTAACCCCCTC
AACGGTATCCGGGGTGAAAATTTTGTACTCTACAGTGCATCAACCGCGAACACCGGTAATGTACACCCCCAGTGTGGTGA
TTATATTTCAGGGACACAAAGTGGGTTATCTGGGCAGTAAAGTGTTTCAGTATGATCCCAAAAACTACCTCATCCTGAGT
GTTCCGCTGCCGTTTGAGTGTGAAACGTTTGCCAGCCCTGAAATACCATTGGCCGGGATTTCCATTCAAGTAGACAGCCA
GATGTTACAAGATTTGATGATGACCATGGGGGATGACGAGCTGGAAAAACCGCCGGGCAATACCTCGGGTGTGAACTCTG
CCCCTCTGACTGAAGAGATGCTGTGTGCAACAGAACGGCTCTTGGATGTGATGTCCATTGCCCGTGATGCCCGCGTCCTT
GGTCCGCAAATTGTGCGAGAAATTCTCTACTACGTCTTGTGTGGGTCATGCGGTGGGGCCTTGCAGGCGTTAGTTAACCG
CCATGGGCACTTTAACCAGATCACCAAAACATTGCGGCGCATCGAAAATCATTTTGCCGATAACCTCAGTGTCGAGCAAT
TAGCGGCGGAGGTGAATATGAGTGTTTCAGCATTCCACCACAACTTTAAAGCGGTAACCAACACCTCTCCACTGCAATAT
CTGAAGTCTTACCGATTGCATCGGGCGCGCATGATGATGTTACATGATGGGCTGAAAGCCAGCACTGCGGCGATCAAGGT
GGGTTACGAGAGTGCCTCACAATTCAGCCGTGAGTTTAAACGCTACTTTGGTCATACGCCGAGTGAAGGTGTTGCCAAAC
AGCGTATTAATTGA

Upstream 100 bases:

>100_bases
ATTGTTTTGAACAATAGGATTTTTGGTAATCGATCACTTGGGGCAATAAATAGCATGGTCTCTATTATTCAAAGTCATAC
AAAAAGCGGACGAGGACGTA

Downstream 100 bases:

>100_bases
CCCTTGGCCGAGGGGCGATAGCTGTAACCAAGGCTTCATAGAAACGGCGTATTAGATGCCGTTTTATTCACCTGGATGGT
GCCTATTTACGCTATTCGGT

Product: AraC family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MVDVIDIQAQMADKIARLAQGDGLTPSTVSGVKILYSTVHQPRTPVMYTPSVVIIFQGHKVGYLGSKVFQYDPKNYLILS
VPLPFECETFASPEIPLAGISIQVDSQMLQDLMMTMGDDELEKPPGNTSGVNSAPLTEEMLCATERLLDVMSIARDARVL
GPQIVREILYYVLCGSCGGALQALVNRHGHFNQITKTLRRIENHFADNLSVEQLAAEVNMSVSAFHHNFKAVTNTSPLQY
LKSYRLHRARMMMLHDGLKASTAAIKVGYESASQFSREFKRYFGHTPSEGVAKQRIN

Sequences:

>Translated_297_residues
MVDVIDIQAQMADKIARLAQGDGLTPSTVSGVKILYSTVHQPRTPVMYTPSVVIIFQGHKVGYLGSKVFQYDPKNYLILS
VPLPFECETFASPEIPLAGISIQVDSQMLQDLMMTMGDDELEKPPGNTSGVNSAPLTEEMLCATERLLDVMSIARDARVL
GPQIVREILYYVLCGSCGGALQALVNRHGHFNQITKTLRRIENHFADNLSVEQLAAEVNMSVSAFHHNFKAVTNTSPLQY
LKSYRLHRARMMMLHDGLKASTAAIKVGYESASQFSREFKRYFGHTPSEGVAKQRIN
>Mature_297_residues
MVDVIDIQAQMADKIARLAQGDGLTPSTVSGVKILYSTVHQPRTPVMYTPSVVIIFQGHKVGYLGSKVFQYDPKNYLILS
VPLPFECETFASPEIPLAGISIQVDSQMLQDLMMTMGDDELEKPPGNTSGVNSAPLTEEMLCATERLLDVMSIARDARVL
GPQIVREILYYVLCGSCGGALQALVNRHGHFNQITKTLRRIENHFADNLSVEQLAAEVNMSVSAFHHNFKAVTNTSPLQY
LKSYRLHRARMMMLHDGLKASTAAIKVGYESASQFSREFKRYFGHTPSEGVAKQRIN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=290, Percent_Identity=60.6896551724138, Blast_Score=382, Evalue=1e-107,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32936; Mature: 32936

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDVIDIQAQMADKIARLAQGDGLTPSTVSGVKILYSTVHQPRTPVMYTPSVVIIFQGHK
CCCEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCEEEEECCCE
VGYLGSKVFQYDPKNYLILSVPLPFECETFASPEIPLAGISIQVDSQMLQDLMMTMGDDE
ECCCCCHHEEECCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHCCCCH
LEKPPGNTSGVNSAPLTEEMLCATERLLDVMSIARDARVLGPQIVREILYYVLCGSCGGA
HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHH
LQALVNRHGHFNQITKTLRRIENHFADNLSVEQLAAEVNMSVSAFHHNFKAVTNTSPLQY
HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCHHHH
LKSYRLHRARMMMLHDGLKASTAAIKVGYESASQFSREFKRYFGHTPSEGVAKQRIN
HHHHHHHHHHHHHHHCCCCHHHHEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHCCC
>Mature Secondary Structure
MVDVIDIQAQMADKIARLAQGDGLTPSTVSGVKILYSTVHQPRTPVMYTPSVVIIFQGHK
CCCEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCEEEEECCCE
VGYLGSKVFQYDPKNYLILSVPLPFECETFASPEIPLAGISIQVDSQMLQDLMMTMGDDE
ECCCCCHHEEECCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHCCCCH
LEKPPGNTSGVNSAPLTEEMLCATERLLDVMSIARDARVLGPQIVREILYYVLCGSCGGA
HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHH
LQALVNRHGHFNQITKTLRRIENHFADNLSVEQLAAEVNMSVSAFHHNFKAVTNTSPLQY
HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCHHHH
LKSYRLHRARMMMLHDGLKASTAAIKVGYESASQFSREFKRYFGHTPSEGVAKQRIN
HHHHHHHHHHHHHHHCCCCHHHHEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]