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The map label for this gene is papC [H]

Identifier: 51597662

GI number: 51597662

Start: 3994683

End: 3997163

Strand: Reverse

Name: papC [H]

Synonym: YPTB3363

Alternate gene names: 51597662

Gene position: 3997163-3994683 (Counterclockwise)

Preceding gene: 51597663

Following gene: 51597661

Centisome position: 84.25

GC content: 50.38

Gene sequence:

>2481_bases
ATGAGAATAATTAAAAAAATTCCTATAGCAATGACTACATCATTGATCATGCTCAGTGGAGCAGTCAGTGCTATTGATTT
TAATACTGATGCAATGGATGCTAACGACAAACAGAATATTGATCTTTCTCATTTTACGAACGTTGGCTATATCATGCCGG
GTGAGTATCGGTTGGAGATCAACGTCAATAATCACCGTATTCCCGAGCAGGTGATCGCTTTTTATGCCCGTGATGATGAA
CCGAATAGCAGTGAGGTGTGCCTACCGGAAGCGGTGGTGGAACAGTTTGGTCTGAAGCCTGATGTGCTGCAAAAGATCAC
ATTCTGGCATGAGGGGCAATGCGCAGATTTGCGTGAGCTGGCGGGATTAACCACGGAGGTTGATTTAGCGACCAGCACGT
TAGCTATCAATGTTCCGCAAGACTGGATGGAATACAGTGACAGCAATTGGGTGCCGTCTTCTCAATGGGATGAGGGGATC
CCTGGGTTTCTGTTGGATTACAACGTGAACTCGCTGTTTAGTAAGCCGAAAGAGAGTGGTTCCACCCGGAATATCAGCCT
CAACGGTACGTCGGGTCTGAATGCGGGCCCTTGGCGGTTACGGGGCGATTATCAAGGGAACTACAGCCACAGCAGTGGCG
AGCAGAATTCGTCTACCAGTACATTTGACTGGAGCCGGATCTATATGTATCGGGCGATCAAGTCACTGGCAGCTACCTTG
AGCGTTGGTGAAAACTATTTCGCCTCCAGCCTTTTCGATACGTTCCGTTATGCCGGAGCCAGTTTGTCCAGCGATGAACG
TATGTTGCCACCTAATTTACGCGGTTATGCCCCTGAGGTTAGCGGGATAGCCAGAACCAACGCCAAAGTGACGGTCTCCC
AGCAGGGGCGCATACTGTATCAAACCACGGTGGCCTCCGGTCCTTTTCGTATTCAGGAACTGAGTGATTCTGTTTCCGGG
CGGCTGGATGTCAGCGTGGAGGAGCAGGATGGCACGGTACAAACTTTTCAGGTGGAGACGGCTGCGGTTCCCTATCTGAC
CCGCCCTGGTGCAATCCGCTATAAAACGTCGGTGGGCCAGCCCTCAACGCTGAATCATGGGACGGAAGGCCCGGTCTTTG
CCAGTGGCGAATTCTCTTGGGGGGTCAGTAATCGCTGGTCACTGTTTGGCGGGGCCATTGGCTCGGGTGATTACAATGCC
GTGTCGGTTGGGGTTGGCCGTGATTTATATGCATTTGGTGCCATTTCAACGGATATCACCCAAACCCGTGCATCGGGCCT
TCCCAACCAAGAGACGCAGAGCGGGAAATCGTTGCGCGTCAGGTATGCCAAGCGCTTTGATGAACTGAACAGTGATATCT
CGCTGGCGGGGAACCGTTTTTTTGAACGTGAATTCATGTCGATGAATCAGTATCTCGGCACCCGTTATTTCGATAATGAC
CTTGGGCGCAACAAGGAAATGTATACGGTGACGGCGAGTAAAAATTTTCCTGATATCCAGACCAATATCAATTTTTCATA
CAGTTACCAGAATTATTGGGATCAGCCCACGTCCAACAGCTACAGCGCGACGGTCAGCCACGCTTTTGATGCTTTTTCTC
TCAAAGATATGACGGTCAACCTTTCTGCCAGCCGTAGCAAAAATAACGGCGTGAATGATGATGTGCTGTATCTGAGTTTT
TCGGTGCCATTAGGCAATCAACAAACCCTCAGCTACAGCGGGCAACATAATGGTCAAGGGAACAACCAGACCGTGAATTA
TTCTAACAGCTCGGCTATCGATAGCAGCTACCGGTTATCCGCAGGGGTTAACAACAGCAATGATAATGGTGCGCGCGGCC
AGTTCAGCGGTTTTTATATTCATCGCAGCAGCATTGCTGAAACCAGCCTTAATGTCGCTTATGTGCAGGATGATTTTACC
TCGACCGGGGTTTCTATGCGCGGGGGCGCGACGGTTACTGCGAAAGGTGCGGCATTACACGGCCCCGGTATGAGTGGCGG
CACCCGCCTGATGGTCAATACCGATGATATTGCTGGCGTCCCACTGGAAGAGCGGAATATTCGTTCAAACCGTTTTGGTA
TTGCTGTGCTGAATAATATTAACAGCTACTACCGTACAGATACGCGTATCGATATCAATCAGTTGGCTGATGATGTTGAA
GTTAAGCAGTCTGCGGTGGAGTTCGCCCTGACCGAAGGGGCTATTGGTTATCGCCGTTTCGCCATGATGAAAGGGGAGAA
GGTACTGGCAACCATCAGCCTGACCGACAGTAGCCATCCGCCTTTTGGTAGTTTGGTCATCAGTGCCAAAGGGCAGGAAC
TGGGGATCGTTAGCGATGACGGTTTTACTTACCTGAGTGGAGTGGAGCCAGGAGAAACACTGGATGTCGTTTGGAGTGGT
GCTAAGCAGTGCCAGGTGGCGATCCCAGCAGTAATACAGCCGCAGGCGCAAATATTATTACCCTGCATATCCGTTAACTA
A

Upstream 100 bases:

>100_bases
AGTAGGGAAAATCATCACACATAACATGATGATTTTTAGCTATTCTTACAACATATCCAGTTGATGTTATTACGGGCAGA
TTTTTCTGGTGAGTAACTGA

Downstream 100 bases:

>100_bases
TATTGAGGTGATATACCATGAAGAAGCTCTCATTAATCGCGTTGACCAGCACAGTGGTATTCACCAGTTATACCGCCAAT
GCTGCGATTGCATTAGACCG

Product: outer membrane fimbrial usher porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 826; Mature: 826

Protein sequence:

>826_residues
MRIIKKIPIAMTTSLIMLSGAVSAIDFNTDAMDANDKQNIDLSHFTNVGYIMPGEYRLEINVNNHRIPEQVIAFYARDDE
PNSSEVCLPEAVVEQFGLKPDVLQKITFWHEGQCADLRELAGLTTEVDLATSTLAINVPQDWMEYSDSNWVPSSQWDEGI
PGFLLDYNVNSLFSKPKESGSTRNISLNGTSGLNAGPWRLRGDYQGNYSHSSGEQNSSTSTFDWSRIYMYRAIKSLAATL
SVGENYFASSLFDTFRYAGASLSSDERMLPPNLRGYAPEVSGIARTNAKVTVSQQGRILYQTTVASGPFRIQELSDSVSG
RLDVSVEEQDGTVQTFQVETAAVPYLTRPGAIRYKTSVGQPSTLNHGTEGPVFASGEFSWGVSNRWSLFGGAIGSGDYNA
VSVGVGRDLYAFGAISTDITQTRASGLPNQETQSGKSLRVRYAKRFDELNSDISLAGNRFFEREFMSMNQYLGTRYFDND
LGRNKEMYTVTASKNFPDIQTNINFSYSYQNYWDQPTSNSYSATVSHAFDAFSLKDMTVNLSASRSKNNGVNDDVLYLSF
SVPLGNQQTLSYSGQHNGQGNNQTVNYSNSSAIDSSYRLSAGVNNSNDNGARGQFSGFYIHRSSIAETSLNVAYVQDDFT
STGVSMRGGATVTAKGAALHGPGMSGGTRLMVNTDDIAGVPLEERNIRSNRFGIAVLNNINSYYRTDTRIDINQLADDVE
VKQSAVEFALTEGAIGYRRFAMMKGEKVLATISLTDSSHPPFGSLVISAKGQELGIVSDDGFTYLSGVEPGETLDVVWSG
AKQCQVAIPAVIQPQAQILLPCISVN

Sequences:

>Translated_826_residues
MRIIKKIPIAMTTSLIMLSGAVSAIDFNTDAMDANDKQNIDLSHFTNVGYIMPGEYRLEINVNNHRIPEQVIAFYARDDE
PNSSEVCLPEAVVEQFGLKPDVLQKITFWHEGQCADLRELAGLTTEVDLATSTLAINVPQDWMEYSDSNWVPSSQWDEGI
PGFLLDYNVNSLFSKPKESGSTRNISLNGTSGLNAGPWRLRGDYQGNYSHSSGEQNSSTSTFDWSRIYMYRAIKSLAATL
SVGENYFASSLFDTFRYAGASLSSDERMLPPNLRGYAPEVSGIARTNAKVTVSQQGRILYQTTVASGPFRIQELSDSVSG
RLDVSVEEQDGTVQTFQVETAAVPYLTRPGAIRYKTSVGQPSTLNHGTEGPVFASGEFSWGVSNRWSLFGGAIGSGDYNA
VSVGVGRDLYAFGAISTDITQTRASGLPNQETQSGKSLRVRYAKRFDELNSDISLAGNRFFEREFMSMNQYLGTRYFDND
LGRNKEMYTVTASKNFPDIQTNINFSYSYQNYWDQPTSNSYSATVSHAFDAFSLKDMTVNLSASRSKNNGVNDDVLYLSF
SVPLGNQQTLSYSGQHNGQGNNQTVNYSNSSAIDSSYRLSAGVNNSNDNGARGQFSGFYIHRSSIAETSLNVAYVQDDFT
STGVSMRGGATVTAKGAALHGPGMSGGTRLMVNTDDIAGVPLEERNIRSNRFGIAVLNNINSYYRTDTRIDINQLADDVE
VKQSAVEFALTEGAIGYRRFAMMKGEKVLATISLTDSSHPPFGSLVISAKGQELGIVSDDGFTYLSGVEPGETLDVVWSG
AKQCQVAIPAVIQPQAQILLPCISVN
>Mature_826_residues
MRIIKKIPIAMTTSLIMLSGAVSAIDFNTDAMDANDKQNIDLSHFTNVGYIMPGEYRLEINVNNHRIPEQVIAFYARDDE
PNSSEVCLPEAVVEQFGLKPDVLQKITFWHEGQCADLRELAGLTTEVDLATSTLAINVPQDWMEYSDSNWVPSSQWDEGI
PGFLLDYNVNSLFSKPKESGSTRNISLNGTSGLNAGPWRLRGDYQGNYSHSSGEQNSSTSTFDWSRIYMYRAIKSLAATL
SVGENYFASSLFDTFRYAGASLSSDERMLPPNLRGYAPEVSGIARTNAKVTVSQQGRILYQTTVASGPFRIQELSDSVSG
RLDVSVEEQDGTVQTFQVETAAVPYLTRPGAIRYKTSVGQPSTLNHGTEGPVFASGEFSWGVSNRWSLFGGAIGSGDYNA
VSVGVGRDLYAFGAISTDITQTRASGLPNQETQSGKSLRVRYAKRFDELNSDISLAGNRFFEREFMSMNQYLGTRYFDND
LGRNKEMYTVTASKNFPDIQTNINFSYSYQNYWDQPTSNSYSATVSHAFDAFSLKDMTVNLSASRSKNNGVNDDVLYLSF
SVPLGNQQTLSYSGQHNGQGNNQTVNYSNSSAIDSSYRLSAGVNNSNDNGARGQFSGFYIHRSSIAETSLNVAYVQDDFT
STGVSMRGGATVTAKGAALHGPGMSGGTRLMVNTDDIAGVPLEERNIRSNRFGIAVLNNINSYYRTDTRIDINQLADDVE
VKQSAVEFALTEGAIGYRRFAMMKGEKVLATISLTDSSHPPFGSLVISAKGQELGIVSDDGFTYLSGVEPGETLDVVWSG
AKQCQVAIPAVIQPQAQILLPCISVN

Specific function: Involved in the export and assembly of pili subunits across the outer membrane. Forms a hexameric ring-shaped pore in the outer bacterial membrane. The 2 nanometer-diameter pore allows the passage of the thin tip fibrillum. As for the rod, it probably unw

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI87081778, Length=821, Percent_Identity=35.5663824604141, Blast_Score=500, Evalue=1e-142,
Organism=Escherichia coli, GI1790772, Length=831, Percent_Identity=29.482551143201, Blast_Score=284, Evalue=2e-77,
Organism=Escherichia coli, GI1789533, Length=824, Percent_Identity=28.0339805825243, Blast_Score=271, Evalue=2e-73,
Organism=Escherichia coli, GI1786332, Length=863, Percent_Identity=27.694090382387, Blast_Score=266, Evalue=4e-72,
Organism=Escherichia coli, GI1786744, Length=854, Percent_Identity=26.6978922716628, Blast_Score=246, Evalue=4e-66,
Organism=Escherichia coli, GI1787172, Length=836, Percent_Identity=28.11004784689, Blast_Score=244, Evalue=2e-65,
Organism=Escherichia coli, GI1788427, Length=764, Percent_Identity=26.3089005235602, Blast_Score=231, Evalue=1e-61,
Organism=Escherichia coli, GI1789610, Length=808, Percent_Identity=23.8861386138614, Blast_Score=98, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 90259; Mature: 90259

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIIKKIPIAMTTSLIMLSGAVSAIDFNTDAMDANDKQNIDLSHFTNVGYIMPGEYRLEI
CCCHHHCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCHHHHCCCCEEECCCEEEEE
NVNNHRIPEQVIAFYARDDEPNSSEVCLPEAVVEQFGLKPDVLQKITFWHEGQCADLREL
ECCCCCCHHHHHEEEECCCCCCCCCEECHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHH
AGLTTEVDLATSTLAINVPQDWMEYSDSNWVPSSQWDEGIPGFLLDYNVNSLFSKPKESG
CCCCEEEEEEEEEEEEECCHHHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHCCCCCCC
STRNISLNGTSGLNAGPWRLRGDYQGNYSHSSGEQNSSTSTFDWSRIYMYRAIKSLAATL
CEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
SVGENYFASSLFDTFRYAGASLSSDERMLPPNLRGYAPEVSGIARTNAKVTVSQQGRILY
HCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEECCCEEEE
QTTVASGPFRIQELSDSVSGRLDVSVEEQDGTVQTFQVETAAVPYLTRPGAIRYKTSVGQ
EEEECCCCEEEHHHHHCCCCEEEEEEECCCCEEEEEEEEEECCCEEECCCCEEEEECCCC
PSTLNHGTEGPVFASGEFSWGVSNRWSLFGGAIGSGDYNAVSVGVGRDLYAFGAISTDIT
CCCCCCCCCCCEEECCCCCCCCCCCCEEECCCCCCCCCCEEEEECCCCEEEECCCCCCHH
QTRASGLPNQETQSGKSLRVRYAKRFDELNSDISLAGNRFFEREFMSMNQYLGTRYFDND
HHHHCCCCCCCCCCCCCEEHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHCCEECCHH
LGRNKEMYTVTASKNFPDIQTNINFSYSYQNYWDQPTSNSYSATVSHAFDAFSLKDMTVN
CCCCCEEEEEEECCCCCCCEECEEEEEECHHHCCCCCCCCCEEEHHHHCCCEEEEEEEEE
LSASRSKNNGVNDDVLYLSFSVPLGNQQTLSYSGQHNGQGNNQTVNYSNSSAIDSSYRLS
EECCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCEEEE
AGVNNSNDNGARGQFSGFYIHRSSIAETSLNVAYVQDDFTSTGVSMRGGATVTAKGAALH
ECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCEEECCCEEEEECCCEEE
GPGMSGGTRLMVNTDDIAGVPLEERNIRSNRFGIAVLNNINSYYRTDTRIDINQLADDVE
CCCCCCCCEEEEECCCCCCCCCHHCCCCCCCEEEEEEECCCHHHCCCCEEEHHHHHHHHH
VKQSAVEFALTEGAIGYRRFAMMKGEKVLATISLTDSSHPPFGSLVISAKGQELGIVSDD
HHHHHHHHHECCCCCCHHHHHEECCCEEEEEEEECCCCCCCCCEEEEEECCCEEEEEECC
GFTYLSGVEPGETLDVVWSGAKQCQVAIPAVIQPQAQILLPCISVN
CCEEECCCCCCCEEEEEECCCCEEEEECCEEECCCCEEEEEEEECC
>Mature Secondary Structure
MRIIKKIPIAMTTSLIMLSGAVSAIDFNTDAMDANDKQNIDLSHFTNVGYIMPGEYRLEI
CCCHHHCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCHHHHCCCCEEECCCEEEEE
NVNNHRIPEQVIAFYARDDEPNSSEVCLPEAVVEQFGLKPDVLQKITFWHEGQCADLREL
ECCCCCCHHHHHEEEECCCCCCCCCEECHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHH
AGLTTEVDLATSTLAINVPQDWMEYSDSNWVPSSQWDEGIPGFLLDYNVNSLFSKPKESG
CCCCEEEEEEEEEEEEECCHHHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHCCCCCCC
STRNISLNGTSGLNAGPWRLRGDYQGNYSHSSGEQNSSTSTFDWSRIYMYRAIKSLAATL
CEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
SVGENYFASSLFDTFRYAGASLSSDERMLPPNLRGYAPEVSGIARTNAKVTVSQQGRILY
HCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEECCCEEEE
QTTVASGPFRIQELSDSVSGRLDVSVEEQDGTVQTFQVETAAVPYLTRPGAIRYKTSVGQ
EEEECCCCEEEHHHHHCCCCEEEEEEECCCCEEEEEEEEEECCCEEECCCCEEEEECCCC
PSTLNHGTEGPVFASGEFSWGVSNRWSLFGGAIGSGDYNAVSVGVGRDLYAFGAISTDIT
CCCCCCCCCCCEEECCCCCCCCCCCCEEECCCCCCCCCCEEEEECCCCEEEECCCCCCHH
QTRASGLPNQETQSGKSLRVRYAKRFDELNSDISLAGNRFFEREFMSMNQYLGTRYFDND
HHHHCCCCCCCCCCCCCEEHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHCCEECCHH
LGRNKEMYTVTASKNFPDIQTNINFSYSYQNYWDQPTSNSYSATVSHAFDAFSLKDMTVN
CCCCCEEEEEEECCCCCCCEECEEEEEECHHHCCCCCCCCCEEEHHHHCCCEEEEEEEEE
LSASRSKNNGVNDDVLYLSFSVPLGNQQTLSYSGQHNGQGNNQTVNYSNSSAIDSSYRLS
EECCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCEEEE
AGVNNSNDNGARGQFSGFYIHRSSIAETSLNVAYVQDDFTSTGVSMRGGATVTAKGAALH
ECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCEEECCCEEEEECCCEEE
GPGMSGGTRLMVNTDDIAGVPLEERNIRSNRFGIAVLNNINSYYRTDTRIDINQLADDVE
CCCCCCCCEEEEECCCCCCCCCHHCCCCCCCEEEEEEECCCHHHCCCCEEEHHHHHHHHH
VKQSAVEFALTEGAIGYRRFAMMKGEKVLATISLTDSSHPPFGSLVISAKGQELGIVSDD
HHHHHHHHHECCCCCCHHHHHEECCCEEEEEEEECCCCCCCCCEEEEEECCCEEEEEECC
GFTYLSGVEPGETLDVVWSGAKQCQVAIPAVIQPQAQILLPCISVN
CCEEECCCCCCCEEEEEECCCCEEEEECCEEECCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2897064; 1357526; 12399496; 2572580; 7909802; 9501230 [H]