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The map label for this gene is fliN

Identifier: 51597652

GI number: 51597652

Start: 3983362

End: 3983775

Strand: Direct

Name: fliN

Synonym: YPTB3352

Alternate gene names: 51597652

Gene position: 3983362-3983775 (Clockwise)

Preceding gene: 51597651

Following gene: 51597653

Centisome position: 83.95

GC content: 44.44

Gene sequence:

>414_bases
ATGACTGACCAGCAAATTGAACTCAACAATGACCTCGACTTTACCCTTGCATTGGATGAGAGCGCCATTAGCCCAACTGA
GCATTTCGATTCGGTGATTAATTCACCAGAGATCATTAATACGCCAGAAAAAACAGCAACAAAGACTGATGAGCAAAAGC
GCAAAATGTCACTGTTCAGCCGGATCCCTGTCACCTTAACACTGGAAGTGGCCTCTGTTGAGATCCCTCTGTCAGAGTTA
CTGACGGTGAATAATGACTCGGTGATTGAGTTAGATAAATTGGCTGGCGAGCCGTTAGATATCCGGGTAAATGGCATCAT
GTTCGGCCAAGCCGAAGTGGTGGTGATTAATGAAAAATACGGCCTGCGTATTATTAACATCAATAGCCAAAATTTAGGTG
AACTCGCGCTATGA

Upstream 100 bases:

>100_bases
GTATTTATTGGCAAAGAAGCGCTATTCAGTGCCGCCATTACCGAGAACCGCGGCAAGTTATTCTTTTCTGAATTTAATGA
CCAACCCAACGAGATGAACC

Downstream 100 bases:

>100_bases
GCCGCAGCCTTCGAGCGATAACACCGGTGACCATCATCAGCCGCGGCCTGCTGGTGGGCGGGCTGCTGTATTCCCCTCTT
CTGCTGGCGCAGGAGGGGGG

Product: flagellar switch protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 136

Protein sequence:

>137_residues
MTDQQIELNNDLDFTLALDESAISPTEHFDSVINSPEIINTPEKTATKTDEQKRKMSLFSRIPVTLTLEVASVEIPLSEL
LTVNNDSVIELDKLAGEPLDIRVNGIMFGQAEVVVINEKYGLRIININSQNLGELAL

Sequences:

>Translated_137_residues
MTDQQIELNNDLDFTLALDESAISPTEHFDSVINSPEIINTPEKTATKTDEQKRKMSLFSRIPVTLTLEVASVEIPLSEL
LTVNNDSVIELDKLAGEPLDIRVNGIMFGQAEVVVINEKYGLRIININSQNLGELAL
>Mature_136_residues
TDQQIELNNDLDFTLALDESAISPTEHFDSVINSPEIINTPEKTATKTDEQKRKMSLFSRIPVTLTLEVASVEIPLSELL
TVNNDSVIELDKLAGEPLDIRVNGIMFGQAEVVVINEKYGLRIININSQNLGELAL

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=66, Percent_Identity=51.5151515151515, Blast_Score=74, Evalue=5e-15,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 15180; Mature: 15049

Theoretical pI: Translated: 4.01; Mature: 4.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDQQIELNNDLDFTLALDESAISPTEHFDSVINSPEIINTPEKTATKTDEQKRKMSLFS
CCCCEEEECCCCEEEEEECCCCCCCHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHH
RIPVTLTLEVASVEIPLSELLTVNNDSVIELDKLAGEPLDIRVNGIMFGQAEVVVINEKY
CCCEEEEEEEEEEECCHHHEEEECCCCEEEEHHHCCCCEEEEEEEEEECCEEEEEEECCC
GLRIININSQNLGELAL
CEEEEEECCCCCCCCCC
>Mature Secondary Structure 
TDQQIELNNDLDFTLALDESAISPTEHFDSVINSPEIINTPEKTATKTDEQKRKMSLFS
CCCEEEECCCCEEEEEECCCCCCCHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHH
RIPVTLTLEVASVEIPLSELLTVNNDSVIELDKLAGEPLDIRVNGIMFGQAEVVVINEKY
CCCEEEEEEEEEEECCHHHEEEECCCCEEEEHHHCCCCEEEEEEEEEECCEEEEEEECCC
GLRIININSQNLGELAL
CEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7622217; 10984043 [H]