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The map label for this gene is flgF

Identifier: 51597636

GI number: 51597636

Start: 3969643

End: 3970374

Strand: Reverse

Name: flgF

Synonym: YPTB3336

Alternate gene names: 51597636

Gene position: 3970374-3969643 (Counterclockwise)

Preceding gene: 51597637

Following gene: 51597635

Centisome position: 83.68

GC content: 55.46

Gene sequence:

>732_bases
ATGGATAAGCTTCTGTATACCGCCGTCAGCGGGGCGAATCGCAGCCTGTCACAACAACAGATCCATGCCAATAATCTGGC
GAACAGCAATACGCAGGGGTTCCGTGCTGATCTGGAAAAAGCCACCGCCACCCAGGTCATGGGCGGTGGTTATAACAGCC
GTGTCGCGGTACTGAGCCAAAATGCCGGGGTGGATATGACCCCCGCCAGTTTGCAAGAAACCGGCCGTGATCTGGATATT
GCCCTTAAAAATCAGGGGCTGATCGCGGTGCTCAGCGGTGGCCGTGAAGTCTATACCCGCAATGGTCAAATGGACGTAAG
CGCCGAGGGGGCGTTAACCATCAATGGCTTGCCGGTACTGGGGGATGGCGGCCCGATTGTCTTGCCGCCTTACTCGGCAT
TATCGATAGCCGATGACGGCACGATAGCGATCATCCCGCAGGCGGGGGGGATCAAAACCCCAGAAGAGATCGAGCGCATC
AAACTGGTGGATATCCCCGCTAACCAACTCAGAAAAAATAACCGCGGTTTACTGGTCAGTAACCGTGGCCCGGCGGCCCG
TGATGAAACGGTGCAAGTGGTGAATAAACACCTGGAAAGCAGCAACGTTTCTGCCATTAGCGAAATGATCGCCAGTATCT
CCCTCAGCCGCCAGTTTGAGGCGCAAATCAAAATGATGAAAGTTGCAGAGGATCTGGCGCAAGCGGGCAACCGGATGATC
CGGGGCAGTTAA

Upstream 100 bases:

>100_bases
AACTGGTAGGGCTGATGACCGCCCAGCGTAACTATCAGGCCAGCACCAAAATCATCAGCACCAATGACAGCATGATGAAT
GCACTGTTCCAGGTGCTGTA

Downstream 100 bases:

>100_bases
TGGCGATGGCGCGGTGAAGTCTCAATCTGCGCCACTTGCTCAATATGGAAATTAAGGAATAACAGTTATGAACTCTGCTT
TATGGGTCAGTAAAACCGGT

Product: flagellar basal body rod protein FlgF

Products: NA

Alternate protein names: Putative proximal rod protein [H]

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MDKLLYTAVSGANRSLSQQQIHANNLANSNTQGFRADLEKATATQVMGGGYNSRVAVLSQNAGVDMTPASLQETGRDLDI
ALKNQGLIAVLSGGREVYTRNGQMDVSAEGALTINGLPVLGDGGPIVLPPYSALSIADDGTIAIIPQAGGIKTPEEIERI
KLVDIPANQLRKNNRGLLVSNRGPAARDETVQVVNKHLESSNVSAISEMIASISLSRQFEAQIKMMKVAEDLAQAGNRMI
RGS

Sequences:

>Translated_243_residues
MDKLLYTAVSGANRSLSQQQIHANNLANSNTQGFRADLEKATATQVMGGGYNSRVAVLSQNAGVDMTPASLQETGRDLDI
ALKNQGLIAVLSGGREVYTRNGQMDVSAEGALTINGLPVLGDGGPIVLPPYSALSIADDGTIAIIPQAGGIKTPEEIERI
KLVDIPANQLRKNNRGLLVSNRGPAARDETVQVVNKHLESSNVSAISEMIASISLSRQFEAQIKMMKVAEDLAQAGNRMI
RGS
>Mature_243_residues
MDKLLYTAVSGANRSLSQQQIHANNLANSNTQGFRADLEKATATQVMGGGYNSRVAVLSQNAGVDMTPASLQETGRDLDI
ALKNQGLIAVLSGGREVYTRNGQMDVSAEGALTINGLPVLGDGGPIVLPPYSALSIADDGTIAIIPQAGGIKTPEEIERI
KLVDIPANQLRKNNRGLLVSNRGPAARDETVQVVNKHLESSNVSAISEMIASISLSRQFEAQIKMMKVAEDLAQAGNRMI
RGS

Specific function: Unknown

COG id: COG4787

COG function: function code N; Flagellar basal body rod protein

Gene ontology:

Cell location: Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flagella basal body rod proteins family [H]

Homologues:

Organism=Escherichia coli, GI1787317, Length=248, Percent_Identity=37.5, Blast_Score=158, Evalue=3e-40,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010930
- InterPro:   IPR001444
- InterPro:   IPR019776
- InterPro:   IPR020013
- InterPro:   IPR012836 [H]

Pfam domain/function: PF06429 DUF1078; PF00460 Flg_bb_rod [H]

EC number: NA

Molecular weight: Translated: 25706; Mature: 25706

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKLLYTAVSGANRSLSQQQIHANNLANSNTQGFRADLEKATATQVMGGGYNSRVAVLSQ
CCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEC
NAGVDMTPASLQETGRDLDIALKNQGLIAVLSGGREVYTRNGQMDVSAEGALTINGLPVL
CCCCCCCCHHHHHCCCCEEEEEECCCEEEEEECCEEEEEECCEEEECCCCEEEECCEEEE
GDGGPIVLPPYSALSIADDGTIAIIPQAGGIKTPEEIERIKLVDIPANQLRKNNRGLLVS
CCCCCEEECCCCEEEECCCCEEEEEECCCCCCCHHHHCEEEEEECCHHHHHCCCCCEEEE
NRGPAARDETVQVVNKHLESSNVSAISEMIASISLSRQFEAQIKMMKVAEDLAQAGNRMI
CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
RGS
CCC
>Mature Secondary Structure
MDKLLYTAVSGANRSLSQQQIHANNLANSNTQGFRADLEKATATQVMGGGYNSRVAVLSQ
CCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEC
NAGVDMTPASLQETGRDLDIALKNQGLIAVLSGGREVYTRNGQMDVSAEGALTINGLPVL
CCCCCCCCHHHHHCCCCEEEEEECCCEEEEEECCEEEEEECCEEEECCCCEEEECCEEEE
GDGGPIVLPPYSALSIADDGTIAIIPQAGGIKTPEEIERIKLVDIPANQLRKNNRGLLVS
CCCCCEEECCCCEEEECCCCEEEEEECCCCCCCHHHHCEEEEEECCHHHHHCCCCCEEEE
NRGPAARDETVQVVNKHLESSNVSAISEMIASISLSRQFEAQIKMMKVAEDLAQAGNRMI
CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
RGS
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]