| Definition | Yersinia pseudotuberculosis IP 32953, complete genome. |
|---|---|
| Accession | NC_006155 |
| Length | 4,744,671 |
Click here to switch to the map view.
The map label for this gene is yjaA [H]
Identifier: 51597574
GI number: 51597574
Start: 3857760
End: 3858173
Strand: Reverse
Name: yjaA [H]
Synonym: YPTB3272
Alternate gene names: 51597574
Gene position: 3858173-3857760 (Counterclockwise)
Preceding gene: 51597575
Following gene: 51597571
Centisome position: 81.32
GC content: 47.1
Gene sequence:
>414_bases ATGCCGTTTTTCTACCTGCAAATACGCAAAAATCATCTTACTTTGAAAAATCTGGATAGCCAGAAAGTTGTCTCCGGCAC GGCTAATTTCAGTACTGAGCGGCTGTTGATTGGCGAGTTCTTTATTGCTGAGGCCTGCCTATATCCTCTGGTATCACAAG TCTTACCTGGATTTATTAACCAATTAAAGCGGCGCTGTTTACGTACTCATATTCTGATTCATGCACAGGAGATGCTGGAA GGAGGGGTCAGCCAGGTAGAGCAGCGGATTATGCGGGAGTTTACCGTTCCGAGCTTCCCCAAGGGATACCATTCTTTATA TGCGGCCCCACAGACACTGAGTGATGATGCCGTGAAGCGCATCATTTTGATGGGTTCAGAAACGCTGCTGACCGCTGCTG ACCTCAAAATCTGA
Upstream 100 bases:
>100_bases AACAATTACGCAATACTTAGGTTCCAAATAATGGATATTCAAAAATATTGAGCACATGCCCCAAATATTAGGATATCAGT ACCATGAGTGACAAGGGAAC
Downstream 100 bases:
>100_bases CCGATTTATGGCTGCGATTTAACAAATTACCCGATAGGGAATATTAAATCGGTGGTGGGTAATCCCCCTTTTTGCCAGAC CTGATCACCGATAAGCGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 137; Mature: 136
Protein sequence:
>137_residues MPFFYLQIRKNHLTLKNLDSQKVVSGTANFSTERLLIGEFFIAEACLYPLVSQVLPGFINQLKRRCLRTHILIHAQEMLE GGVSQVEQRIMREFTVPSFPKGYHSLYAAPQTLSDDAVKRIILMGSETLLTAADLKI
Sequences:
>Translated_137_residues MPFFYLQIRKNHLTLKNLDSQKVVSGTANFSTERLLIGEFFIAEACLYPLVSQVLPGFINQLKRRCLRTHILIHAQEMLE GGVSQVEQRIMREFTVPSFPKGYHSLYAAPQTLSDDAVKRIILMGSETLLTAADLKI >Mature_136_residues PFFYLQIRKNHLTLKNLDSQKVVSGTANFSTERLLIGEFFIAEACLYPLVSQVLPGFINQLKRRCLRTHILIHAQEMLEG GVSQVEQRIMREFTVPSFPKGYHSLYAAPQTLSDDAVKRIILMGSETLLTAADLKI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1790441, Length=120, Percent_Identity=41.6666666666667, Blast_Score=88, Evalue=2e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15538; Mature: 15407
Theoretical pI: Translated: 9.16; Mature: 9.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFFYLQIRKNHLTLKNLDSQKVVSGTANFSTERLLIGEFFIAEACLYPLVSQVLPGFIN CCEEEEEEECCCCEECCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH QLKRRCLRTHILIHAQEMLEGGVSQVEQRIMREFTVPSFPKGYHSLYAAPQTLSDDAVKR HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCHHHHHH IILMGSETLLTAADLKI HHHCCCCHHHHHCCCCC >Mature Secondary Structure PFFYLQIRKNHLTLKNLDSQKVVSGTANFSTERLLIGEFFIAEACLYPLVSQVLPGFIN CEEEEEEECCCCEECCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH QLKRRCLRTHILIHAQEMLEGGVSQVEQRIMREFTVPSFPKGYHSLYAAPQTLSDDAVKR HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCHHHHHH IILMGSETLLTAADLKI HHHCCCCHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2412207; 8265357; 9278503 [H]