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The map label for this gene is yggS [H]

Identifier: 51597523

GI number: 51597523

Start: 3778550

End: 3779248

Strand: Direct

Name: yggS [H]

Synonym: YPTB3213

Alternate gene names: 51597523

Gene position: 3778550-3779248 (Clockwise)

Preceding gene: 51597521

Following gene: 51597524

Centisome position: 79.64

GC content: 49.07

Gene sequence:

>699_bases
ATGAGTACTATCCAACAGAATCTACAGGATGTCAGAGCGCGGATCGCAACGGCTGCACACAATTGCGGGCGCTCTCCAGA
AGAAGTTACATTGCTTGCAGTCAGTAAAACCAAACCTGTGGCGGCTATCGAAAAAGCCATCGCCGCTGGGCAATATGCTT
TTGGTGAAAACTATGTGCAGGAAGGGGTGGATAAAATTCACTCCTTCGCGGATAACAAAACGCTTGAATGGCACTTTATC
GGGCCGCTGCAATCCAATAAAAGCCGGTTAGTGGCTGAAAATTTTGCCTGGTGTCATACCGTTGATCGGTTGAAAATAGC
CCAGCGTCTGAGTGCCCAGCGCCCAGCGGCTATGCCAGCGTTAAACGTACTGATTCAGATTAATATCAGTGATGAGCAAA
GCAAAGCGGGGATTTCCTTGAGTGAACTCCCCGCCTTGGCTGACAGCATTAGTACATTACCTAACCTGTGTTTACGCGGG
CTGATGGCTATCCCAGCGCCAGAACATGATTATCAGCGGCAATTGGCCGTATTTACGCAAATGAATCAGGCGTTCTTGAC
TTTAAAAGCCCGCTACCCTCAGATAGATACACTTTCTATGGGGATGACTGATGATATGGACGCCGCCATTAGCGCCGGCA
GTACACTGGTTCGAATTGGTACCGCCATTTTTGGTGCCCGCGTTTATAACGCGGATTAA

Upstream 100 bases:

>100_bases
ATCAATGCGTTTGGCTTTTATACGGCTAAACACGGGGTTATTCAGATCTGAATGTTGATTATTCAGGCTTGTGAAATCCA
TATCCAACTCCTGGGTCCAT

Downstream 100 bases:

>100_bases
TCACAGCATTTATTGTTCACTACACTTACGGAACATAACTCTCTGTTGAACGTAATTATTTGTTGAACATCAGTTCCTGT
TGAACATAAGTCCTCGTTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MSTIQQNLQDVRARIATAAHNCGRSPEEVTLLAVSKTKPVAAIEKAIAAGQYAFGENYVQEGVDKIHSFADNKTLEWHFI
GPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPAAMPALNVLIQINISDEQSKAGISLSELPALADSISTLPNLCLRG
LMAIPAPEHDYQRQLAVFTQMNQAFLTLKARYPQIDTLSMGMTDDMDAAISAGSTLVRIGTAIFGARVYNAD

Sequences:

>Translated_232_residues
MSTIQQNLQDVRARIATAAHNCGRSPEEVTLLAVSKTKPVAAIEKAIAAGQYAFGENYVQEGVDKIHSFADNKTLEWHFI
GPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPAAMPALNVLIQINISDEQSKAGISLSELPALADSISTLPNLCLRG
LMAIPAPEHDYQRQLAVFTQMNQAFLTLKARYPQIDTLSMGMTDDMDAAISAGSTLVRIGTAIFGARVYNAD
>Mature_231_residues
STIQQNLQDVRARIATAAHNCGRSPEEVTLLAVSKTKPVAAIEKAIAAGQYAFGENYVQEGVDKIHSFADNKTLEWHFIG
PLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPAAMPALNVLIQINISDEQSKAGISLSELPALADSISTLPNLCLRGL
MAIPAPEHDYQRQLAVFTQMNQAFLTLKARYPQIDTLSMGMTDDMDAAISAGSTLVRIGTAIFGARVYNAD

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=216, Percent_Identity=39.3518518518519, Blast_Score=120, Evalue=1e-27,
Organism=Escherichia coli, GI1789321, Length=232, Percent_Identity=68.9655172413793, Blast_Score=324, Evalue=3e-90,
Organism=Caenorhabditis elegans, GI17533025, Length=245, Percent_Identity=33.469387755102, Blast_Score=114, Evalue=5e-26,
Organism=Saccharomyces cerevisiae, GI6319435, Length=233, Percent_Identity=34.7639484978541, Blast_Score=110, Evalue=2e-25,
Organism=Drosophila melanogaster, GI45550861, Length=243, Percent_Identity=39.0946502057613, Blast_Score=132, Evalue=1e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25282; Mature: 25151

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTIQQNLQDVRARIATAAHNCGRSPEEVTLLAVSKTKPVAAIEKAIAAGQYAFGENYVQ
CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHH
EGVDKIHSFADNKTLEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPAAMPA
HHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
LNVLIQINISDEQSKAGISLSELPALADSISTLPNLCLRGLMAIPAPEHDYQRQLAVFTQ
EEEEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
MNQAFLTLKARYPQIDTLSMGMTDDMDAAISAGSTLVRIGTAIFGARVYNAD
HHHHEEEEEECCCCCCEEECCCCCCHHHHHHCCCHHHHHHHHHHHCEEECCC
>Mature Secondary Structure 
STIQQNLQDVRARIATAAHNCGRSPEEVTLLAVSKTKPVAAIEKAIAAGQYAFGENYVQ
CHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHH
EGVDKIHSFADNKTLEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPAAMPA
HHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
LNVLIQINISDEQSKAGISLSELPALADSISTLPNLCLRGLMAIPAPEHDYQRQLAVFTQ
EEEEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
MNQAFLTLKARYPQIDTLSMGMTDDMDAAISAGSTLVRIGTAIFGARVYNAD
HHHHEEEEEECCCCCCEEECCCCCCHHHHHHCCCHHHHHHHHHHHCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]