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The map label for this gene is ygiT [H]

Identifier: 51597436

GI number: 51597436

Start: 3685929

End: 3686327

Strand: Reverse

Name: ygiT [H]

Synonym: YPTB3123

Alternate gene names: 51597436

Gene position: 3686327-3685929 (Counterclockwise)

Preceding gene: 51597437

Following gene: 51597434

Centisome position: 77.69

GC content: 45.61

Gene sequence:

>399_bases
ATGATGAAATGTCCAGTTTGTGGCGGTGTAGAATTAATCCACGAAGCGCGTGACGTTCCCTTTACCTATAAAGGGCGTAA
GTTCATCGTCGAAGGCGTGATAGGGCAACATTGCCCGGCATGCGGTGAAACAGTCATGACCGAAGCCGAGTCCGATGTCT
ATGCAGCAAAAACAATGCTTTTGCGAAAAATGGTCAATACAGAATCGATTGCCCCCGCATATATTGTGCAGATCCGAAAA
AAGTTGGGCCTAAACCAGCGGGAAGCCAGTGAGATTTTTGGTGGTGGGGTTAATGCATTTTCGCGTTACGAAAAAGGTAA
GGCTTTGCCACATCCATCAACGATAAAACTGTTGCAAGTGCTTGATAAACACCCGGAGTTATTGAATGAAATTAGGTAG

Upstream 100 bases:

>100_bases
TTTGGCAGGATGTTTACCGTCCTATGCTTTCTTGCGGTAGAGTTTATTTGAAAATCACGGTTATCGATGATGTTTTGATT
GTCTCGTTTAAGGAGATTTA

Downstream 100 bases:

>100_bases
CTGTTAGGGTGCAACAAGATACTTTGTAATGTGATTTTTTGCGGGCGAGGGGATAGGGATATTATCGCCAATTTTTTAGT
CGCGCGGTTTACCATTTCAT

Product: DNA binding (HTH) protein.

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MMKCPVCGGVELIHEARDVPFTYKGRKFIVEGVIGQHCPACGETVMTEAESDVYAAKTMLLRKMVNTESIAPAYIVQIRK
KLGLNQREASEIFGGGVNAFSRYEKGKALPHPSTIKLLQVLDKHPELLNEIR

Sequences:

>Translated_132_residues
MMKCPVCGGVELIHEARDVPFTYKGRKFIVEGVIGQHCPACGETVMTEAESDVYAAKTMLLRKMVNTESIAPAYIVQIRK
KLGLNQREASEIFGGGVNAFSRYEKGKALPHPSTIKLLQVLDKHPELLNEIR
>Mature_132_residues
MMKCPVCGGVELIHEARDVPFTYKGRKFIVEGVIGQHCPACGETVMTEAESDVYAAKTMLLRKMVNTESIAPAYIVQIRK
KLGLNQREASEIFGGGVNAFSRYEKGKALPHPSTIKLLQVLDKHPELLNEIR

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789398, Length=131, Percent_Identity=60.3053435114504, Blast_Score=176, Evalue=4e-46,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR022452
- InterPro:   IPR022453 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14657; Mature: 14657

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKCPVCGGVELIHEARDVPFTYKGRKFIVEGVIGQHCPACGETVMTEAESDVYAAKTML
CCCCCCCCCHHHHHHHHCCCEEECCCHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHH
LRKMVNTESIAPAYIVQIRKKLGLNQREASEIFGGGVNAFSRYEKGKALPHPSTIKLLQV
HHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHH
LDKHPELLNEIR
HHCCHHHHHHCC
>Mature Secondary Structure
MMKCPVCGGVELIHEARDVPFTYKGRKFIVEGVIGQHCPACGETVMTEAESDVYAAKTML
CCCCCCCCCHHHHHHHHCCCEEECCCHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHH
LRKMVNTESIAPAYIVQIRKKLGLNQREASEIFGGGVNAFSRYEKGKALPHPSTIKLLQV
HHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHH
LDKHPELLNEIR
HHCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]