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The map label for this gene is lysA

Identifier: 51597359

GI number: 51597359

Start: 3596120

End: 3597382

Strand: Reverse

Name: lysA

Synonym: YPTB3045

Alternate gene names: 51597359

Gene position: 3597382-3596120 (Counterclockwise)

Preceding gene: 51597361

Following gene: 51597357

Centisome position: 75.82

GC content: 50.99

Gene sequence:

>1263_bases
ATGCCACGCGCACTGAATGACCGTTCTTCAGCACTGACTGCCCAAAATCTGATTGCATTGCCTGAGCGTTTTGGTTGCCC
GGTGTGGGCCTATGATGGTGATATTATTGCTGAGCGTATTAATCAATTACGCCATTTTGATGTTATCCGCTTCGCGCAAA
AAGCCTGTTCGAATATCCATATACTGCGCCTGATGCGTGAGCAAGGCGTTAAGGTTGATTCGGTATCTTTGGGTGAAATC
GAGCGTGCCTTGCACGCGGGTTATCAACCGGGGCAGGAACCTGCCGAAATTGTTTTCACGGCTGATTTACTGGATCAGGC
GACCTTATTGCGCGTTACTGAATTGAATATCCCGGTCAATGCCGGGTCTATCGATATGTTGGATCAACTGGGGCAACAGG
CTCCGGGTCACCCTGTTTGGCTGCGCGTCAATCCGGGTTTTGGTCATGGGCATAGCCAGAAAACCAATACCGGCGGTGAA
AACAGCAAACACGGCATTTGGCATGAAGAACTCCCTCGCGCACTCAAGAAAATTGAGCACTATGGCTTAACACTGGTGGG
GATTCATATGCATATTGGCTCGGGTGTCGATTATCAACACCTTGAGCAAGTCTGCGATGCCATGGTTCAGCAAGTGATTA
CCTTAGGGCACGATATCAGTGCTATCTCTGCTGGCGGTGGGTTATCGATCCCCTATCAGTTTGGCGATGATGTGATTGAT
ACTGAACACTATTATGGGTTATGGAATAGCGCCAGAGAGCGAATTGCTGCTCATTTGGGCCACCCGGTTAGCCTTGAAAT
TGAACCAGGCCGCTTCCTGGTAGCAGAGTCTGGTGTATTGATCGCTCAGGTTCGTGCTGTTAAGGATATGGGCCGCCGGC
ATTATGTCTTGGTTGATGCCGGGTTTAACGATCTGATGCGCCCAGCGATGTATGGCAGTTATCACCATATTTCATTGCTT
CCTGCGGATGGGCGCGACCTGGCGTCAGCTCCGCTGATTGATACCGTGGTTGCTGGCCCGCTTTGCGAATCTGGCGATGT
CTTCACTCAGCAAGAGGGCGGAGGTGTGGAGACCCTTGCTCTGCCTGCTGCGGTTATTGGCGATTATCTGGTCTTCCATG
ATACGGGGGCTTATGGCGCGTCGATGTCATCTAACTACAACAGCCGCCCGTTATTACCTGAAGTATTGTTTGAAAAGGGC
CAACCGCGCTTGATCCGCCGCCGTCAAACCATTGAAGAATTGATTGACCTGGAACGCGTTTAA

Upstream 100 bases:

>100_bases
GGCGTCATTTCCGCCACCCATTATTGGGTACATCATTTAATACATTATTCAGCACATTGATGAGCTCGTACATTAATGGC
TACACAATTAGGAAATAGTT

Downstream 100 bases:

>100_bases
TCAGTGTCATCCCGTAGGCTTGGCGGGCTGGCCACAGAGTGGCGGCGAACCAGTGTTGGGCTGAACATATTGGTAATTTC
GGGTAACGGTGTGTTGTTGG

Product: diaminopimelate decarboxylase

Products: NA

Alternate protein names: DAP decarboxylase [H]

Number of amino acids: Translated: 420; Mature: 419

Protein sequence:

>420_residues
MPRALNDRSSALTAQNLIALPERFGCPVWAYDGDIIAERINQLRHFDVIRFAQKACSNIHILRLMREQGVKVDSVSLGEI
ERALHAGYQPGQEPAEIVFTADLLDQATLLRVTELNIPVNAGSIDMLDQLGQQAPGHPVWLRVNPGFGHGHSQKTNTGGE
NSKHGIWHEELPRALKKIEHYGLTLVGIHMHIGSGVDYQHLEQVCDAMVQQVITLGHDISAISAGGGLSIPYQFGDDVID
TEHYYGLWNSARERIAAHLGHPVSLEIEPGRFLVAESGVLIAQVRAVKDMGRRHYVLVDAGFNDLMRPAMYGSYHHISLL
PADGRDLASAPLIDTVVAGPLCESGDVFTQQEGGGVETLALPAAVIGDYLVFHDTGAYGASMSSNYNSRPLLPEVLFEKG
QPRLIRRRQTIEELIDLERV

Sequences:

>Translated_420_residues
MPRALNDRSSALTAQNLIALPERFGCPVWAYDGDIIAERINQLRHFDVIRFAQKACSNIHILRLMREQGVKVDSVSLGEI
ERALHAGYQPGQEPAEIVFTADLLDQATLLRVTELNIPVNAGSIDMLDQLGQQAPGHPVWLRVNPGFGHGHSQKTNTGGE
NSKHGIWHEELPRALKKIEHYGLTLVGIHMHIGSGVDYQHLEQVCDAMVQQVITLGHDISAISAGGGLSIPYQFGDDVID
TEHYYGLWNSARERIAAHLGHPVSLEIEPGRFLVAESGVLIAQVRAVKDMGRRHYVLVDAGFNDLMRPAMYGSYHHISLL
PADGRDLASAPLIDTVVAGPLCESGDVFTQQEGGGVETLALPAAVIGDYLVFHDTGAYGASMSSNYNSRPLLPEVLFEKG
QPRLIRRRQTIEELIDLERV
>Mature_419_residues
PRALNDRSSALTAQNLIALPERFGCPVWAYDGDIIAERINQLRHFDVIRFAQKACSNIHILRLMREQGVKVDSVSLGEIE
RALHAGYQPGQEPAEIVFTADLLDQATLLRVTELNIPVNAGSIDMLDQLGQQAPGHPVWLRVNPGFGHGHSQKTNTGGEN
SKHGIWHEELPRALKKIEHYGLTLVGIHMHIGSGVDYQHLEQVCDAMVQQVITLGHDISAISAGGGLSIPYQFGDDVIDT
EHYYGLWNSARERIAAHLGHPVSLEIEPGRFLVAESGVLIAQVRAVKDMGRRHYVLVDAGFNDLMRPAMYGSYHHISLLP
ADGRDLASAPLIDTVVAGPLCESGDVFTQQEGGGVETLALPAAVIGDYLVFHDTGAYGASMSSNYNSRPLLPEVLFEKGQ
PRLIRRRQTIEELIDLERV

Specific function: Lysine biosynthesis; last step. [C]

COG id: COG0019

COG function: function code E; Diaminopimelate decarboxylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Orn/Lys/Arg decarboxylase class-II family [H]

Homologues:

Organism=Escherichia coli, GI1789203, Length=411, Percent_Identity=77.3722627737226, Blast_Score=661, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009006
- InterPro:   IPR002986
- InterPro:   IPR022643
- InterPro:   IPR022657
- InterPro:   IPR022644
- InterPro:   IPR022653
- InterPro:   IPR000183 [H]

Pfam domain/function: PF02784 Orn_Arg_deC_N; PF00278 Orn_DAP_Arg_deC [H]

EC number: =4.1.1.20 [H]

Molecular weight: Translated: 46137; Mature: 46006

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: PS00591 GLYCOSYL_HYDROL_F10 ; PS00878 ODR_DC_2_1 ; PS00879 ODR_DC_2_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRALNDRSSALTAQNLIALPERFGCPVWAYDGDIIAERINQLRHFDVIRFAQKACSNIH
CCCCCCCCHHHHHHHHHHHCHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCHH
ILRLMREQGVKVDSVSLGEIERALHAGYQPGQEPAEIVFTADLLDQATLLRVTELNIPVN
HHHHHHHCCCEECCCCHHHHHHHHHCCCCCCCCCHHEEEEHHHHCCHHEEEEEEECCCCC
AGSIDMLDQLGQQAPGHPVWLRVNPGFGHGHSQKTNTGGENSKHGIWHEELPRALKKIEH
CCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
YGLTLVGIHMHIGSGVDYQHLEQVCDAMVQQVITLGHDISAISAGGGLSIPYQFGDDVID
CCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHCCCCCCC
TEHYYGLWNSARERIAAHLGHPVSLEIEPGRFLVAESGVLIAQVRAVKDMGRRHYVLVDA
CHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCHHHHHHHHHHCCCEEEEEEEC
GFNDLMRPAMYGSYHHISLLPADGRDLASAPLIDTVVAGPLCESGDVFTQQEGGGVETLA
CHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCEEEECCCCCEEHHH
LPAAVIGDYLVFHDTGAYGASMSSNYNSRPLLPEVLFEKGQPRLIRRRQTIEELIDLERV
HHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PRALNDRSSALTAQNLIALPERFGCPVWAYDGDIIAERINQLRHFDVIRFAQKACSNIH
CCCCCCCHHHHHHHHHHHCHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCHH
ILRLMREQGVKVDSVSLGEIERALHAGYQPGQEPAEIVFTADLLDQATLLRVTELNIPVN
HHHHHHHCCCEECCCCHHHHHHHHHCCCCCCCCCHHEEEEHHHHCCHHEEEEEEECCCCC
AGSIDMLDQLGQQAPGHPVWLRVNPGFGHGHSQKTNTGGENSKHGIWHEELPRALKKIEH
CCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
YGLTLVGIHMHIGSGVDYQHLEQVCDAMVQQVITLGHDISAISAGGGLSIPYQFGDDVID
CCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHCCCCCCC
TEHYYGLWNSARERIAAHLGHPVSLEIEPGRFLVAESGVLIAQVRAVKDMGRRHYVLVDA
CHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCHHHHHHHHHHCCCEEEEEEEC
GFNDLMRPAMYGSYHHISLLPADGRDLASAPLIDTVVAGPLCESGDVFTQQEGGGVETLA
CHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCEEEECCCCCEEHHH
LPAAVIGDYLVFHDTGAYGASMSSNYNSRPLLPEVLFEKGQPRLIRRRQTIEELIDLERV
HHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 6350601; 9278503 [H]