Click here to switch to the map view.

The map label for this gene is rnhB

Identifier: 51597304

GI number: 51597304

Start: 3527439

End: 3528035

Strand: Reverse

Name: rnhB

Synonym: YPTB2989

Alternate gene names: 51597304

Gene position: 3528035-3527439 (Counterclockwise)

Preceding gene: 51597305

Following gene: 51597303

Centisome position: 74.36

GC content: 50.42

Gene sequence:

>597_bases
ATGAGCGAGACTTTTATTTACCCACAGGCTAATTTAATCGCAGGCGTGGATGAAGTGGGTCGTGGCCCTTTGGTGGGTGC
CGTAGTCACTGCAGCGGTGATCCTTGATCCTAACCGGCCAATAGTTGGCTTGGCAGATTCAAAAAAACTCAGCGAGAAGC
GCCGCCTGTCACTGTATGACGAAATCACTGAAAAGGCACTATCATGGAGTCTTGGTCGTGCTGAACCGGAAGAAATTGAT
CAGCTTAATATTTTGCACGCAACCATGCTGGCGATGCAAAGGGCTGTATCGGGGCTGCATATTGTACCCGATTATGTATT
GATAGATGGTAACCGTTGCCCGAAATTACAGATGCCGTCACTGGCCGTTGTCAAAGGAGATAGCCGGGTGGCGGAGATCA
GCGCGGCTTCTATTTTAGCCAAAGTGACGCGTGATCGTGAAATGACCGAGTTGGACCTCCTCTTCCCTGAATATGGTTTC
GCACAACATAAAGGCTACCCAACGGCTTTTCATTTGGAAAAGTTAGCCGCGCTTGGTGCCACGGTACATCATCGGCGCAG
TTTTGGCCCGGTGAAACGGGTGCTGGGTTTGGTGTAA

Upstream 100 bases:

>100_bases
AAATAGCAGCCTTAAAAGAACGTTTTTTGGTTCTGCATCAGAGCATCCGCTGTGGTGCGGATGAACAGGCAGCACAAGCT
GTATTGGAGCTGGCAGATCG

Downstream 100 bases:

>100_bases
ACGATAAGCTTGCATCGATGATATATATACCCTAAATAATTTGAGTTGCACGAAGATAGCCAATACATAGGCAACTTGAA
ATATGATGGGGATAGCTATG

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII [H]

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MSETFIYPQANLIAGVDEVGRGPLVGAVVTAAVILDPNRPIVGLADSKKLSEKRRLSLYDEITEKALSWSLGRAEPEEID
QLNILHATMLAMQRAVSGLHIVPDYVLIDGNRCPKLQMPSLAVVKGDSRVAEISAASILAKVTRDREMTELDLLFPEYGF
AQHKGYPTAFHLEKLAALGATVHHRRSFGPVKRVLGLV

Sequences:

>Translated_198_residues
MSETFIYPQANLIAGVDEVGRGPLVGAVVTAAVILDPNRPIVGLADSKKLSEKRRLSLYDEITEKALSWSLGRAEPEEID
QLNILHATMLAMQRAVSGLHIVPDYVLIDGNRCPKLQMPSLAVVKGDSRVAEISAASILAKVTRDREMTELDLLFPEYGF
AQHKGYPTAFHLEKLAALGATVHHRRSFGPVKRVLGLV
>Mature_197_residues
SETFIYPQANLIAGVDEVGRGPLVGAVVTAAVILDPNRPIVGLADSKKLSEKRRLSLYDEITEKALSWSLGRAEPEEIDQ
LNILHATMLAMQRAVSGLHIVPDYVLIDGNRCPKLQMPSLAVVKGDSRVAEISAASILAKVTRDREMTELDLLFPEYGFA
QHKGYPTAFHLEKLAALGATVHHRRSFGPVKRVLGLV

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family [H]

Homologues:

Organism=Escherichia coli, GI1786380, Length=193, Percent_Identity=84.4559585492228, Blast_Score=340, Evalue=4e-95,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 21648; Mature: 21517

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSETFIYPQANLIAGVDEVGRGPLVGAVVTAAVILDPNRPIVGLADSKKLSEKRRLSLYD
CCCCEECCCHHHHHCHHHHCCCCHHHHHHHHHEEECCCCCEEECCCCHHHHHHHHHHHHH
EITEKALSWSLGRAEPEEIDQLNILHATMLAMQRAVSGLHIVPDYVLIDGNRCPKLQMPS
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEECCCEEEECCCCCCCCCCCC
LAVVKGDSRVAEISAASILAKVTRDREMTELDLLFPEYGFAQHKGYPTAFHLEKLAALGA
EEEEECCCHHHHHHHHHHHHHHHCCCCCHHHEEECCCCCCHHHCCCCCHHHHHHHHHHHH
TVHHRRSFGPVKRVLGLV
HHHHHHCCHHHHHHHCCC
>Mature Secondary Structure 
SETFIYPQANLIAGVDEVGRGPLVGAVVTAAVILDPNRPIVGLADSKKLSEKRRLSLYD
CCCEECCCHHHHHCHHHHCCCCHHHHHHHHHEEECCCCCEEECCCCHHHHHHHHHHHHH
EITEKALSWSLGRAEPEEIDQLNILHATMLAMQRAVSGLHIVPDYVLIDGNRCPKLQMPS
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEECCCEEEECCCCCCCCCCCC
LAVVKGDSRVAEISAASILAKVTRDREMTELDLLFPEYGFAQHKGYPTAFHLEKLAALGA
EEEEECCCHHHHHHHHHHHHHHHCCCCCHHHEEECCCCCCHHHCCCCCHHHHHHHHHHHH
TVHHRRSFGPVKRVLGLV
HHHHHHCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA