Click here to switch to the map view.

The map label for this gene is ybgJ [H]

Identifier: 51597226

GI number: 51597226

Start: 3440240

End: 3440896

Strand: Reverse

Name: ybgJ [H]

Synonym: YPTB2910

Alternate gene names: 51597226

Gene position: 3440896-3440240 (Counterclockwise)

Preceding gene: 51597227

Following gene: 51597225

Centisome position: 72.52

GC content: 53.27

Gene sequence:

>657_bases
GTGCAACGAGCACGATGCTATTTACTGGGAGAGAGTGCGGTGGTGTTGGAGTTAGAACCACCGGTAACATTAGCCAGCCA
GCAACGGATTTGGGGCTTAGCTGATCGCCTAATTCATCATGCCGATATCCTTGAGGTGATCCCTGGCATGAATAATTTAA
CTCTACTGTTGGCCGATCCACACAATACTGCCTTAGATGCGATTGAGCGGTTACAACGTTGGTGGGAAGAGAGCGAGTCA
TTGATACCCGAATCGCGGGATATCACCATCCCGGTAATGTATGGCGGTGAAGTCGGTCCCGATCTGGCTGACGTTGCCCG
TCATACGGGGATGAGTGAACGTCAGGTGGTTGAGTGCCACGCGGGCGCCCGTTATATCGTCTATTTTTTAGGCTTTCAAC
CGGGGTTCTCTTATCTGGGAGGGATGCCAGAGCAACTGGCTACACCACGGCGTGCAGATCCACGTTTAGTCGTTGCACCG
GGTTCGGTCGGGATTGGTGGCAGCCAAACGGGAATTTATCCCTTGGCAACACCGGGAGGGTGGCAGTTAATTGGTCGCAC
CTCACTGGCATTGTTTAATCCAGTGGCGATGCCACCGACCTTATTGCGACCTGGGGATAATGTGCGCTTTCTGCCGCTAA
AGGAGGGCGTATGTTGA

Upstream 100 bases:

>100_bases
TTGAGATAAGTTTATCGGGATTCGAGTATTTTATTTTGCTGTCGCGCCAATGACGTTGGGTATCTAAAAACAAGAACCAT
AAATTAATCAGGGGGACGGG

Downstream 100 bases:

>100_bases
ATATCATCCGCGCAGGTATTTATACCACGGTTCAAGATGCTGGCCGTGGCGGTTTTCGCCGCTTGGGGATCAGCCAAGGG
GGAGCGTTAGATTTACCCGC

Product: carboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MQRARCYLLGESAVVLELEPPVTLASQQRIWGLADRLIHHADILEVIPGMNNLTLLLADPHNTALDAIERLQRWWEESES
LIPESRDITIPVMYGGEVGPDLADVARHTGMSERQVVECHAGARYIVYFLGFQPGFSYLGGMPEQLATPRRADPRLVVAP
GSVGIGGSQTGIYPLATPGGWQLIGRTSLALFNPVAMPPTLLRPGDNVRFLPLKEGVC

Sequences:

>Translated_218_residues
MQRARCYLLGESAVVLELEPPVTLASQQRIWGLADRLIHHADILEVIPGMNNLTLLLADPHNTALDAIERLQRWWEESES
LIPESRDITIPVMYGGEVGPDLADVARHTGMSERQVVECHAGARYIVYFLGFQPGFSYLGGMPEQLATPRRADPRLVVAP
GSVGIGGSQTGIYPLATPGGWQLIGRTSLALFNPVAMPPTLLRPGDNVRFLPLKEGVC
>Mature_218_residues
MQRARCYLLGESAVVLELEPPVTLASQQRIWGLADRLIHHADILEVIPGMNNLTLLLADPHNTALDAIERLQRWWEESES
LIPESRDITIPVMYGGEVGPDLADVARHTGMSERQVVECHAGARYIVYFLGFQPGFSYLGGMPEQLATPRRADPRLVVAP
GSVGIGGSQTGIYPLATPGGWQLIGRTSLALFNPVAMPPTLLRPGDNVRFLPLKEGVC

Specific function: Unknown

COG id: COG2049

COG function: function code E; Allophanate hydrolase subunit 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786929, Length=218, Percent_Identity=72.0183486238532, Blast_Score=325, Evalue=2e-90,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003833
- InterPro:   IPR020899
- InterPro:   IPR010016
- InterPro:   IPR002130 [H]

Pfam domain/function: PF02682 AHS1 [H]

EC number: NA

Molecular weight: Translated: 23829; Mature: 23829

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRARCYLLGESAVVLELEPPVTLASQQRIWGLADRLIHHADILEVIPGMNNLTLLLADP
CCCCEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
HNTALDAIERLQRWWEESESLIPESRDITIPVMYGGEVGPDLADVARHTGMSERQVVECH
CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHCCCCCCEEEEEC
AGARYIVYFLGFQPGFSYLGGMPEQLATPRRADPRLVVAPGSVGIGGSQTGIYPLATPGG
CCCEEEEEEEECCCCHHHHCCCCHHHCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCC
WQLIGRTSLALFNPVAMPPTLLRPGDNVRFLPLKEGVC
EEEECCCHHHHCCCCCCCCCEECCCCCEEEEECCCCCC
>Mature Secondary Structure
MQRARCYLLGESAVVLELEPPVTLASQQRIWGLADRLIHHADILEVIPGMNNLTLLLADP
CCCCEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
HNTALDAIERLQRWWEESESLIPESRDITIPVMYGGEVGPDLADVARHTGMSERQVVECH
CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHCCCCCCEEEEEC
AGARYIVYFLGFQPGFSYLGGMPEQLATPRRADPRLVVAPGSVGIGGSQTGIYPLATPGG
CCCEEEEEEEECCCCHHHHCCCCHHHCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCC
WQLIGRTSLALFNPVAMPPTLLRPGDNVRFLPLKEGVC
EEEECCCHHHHCCCCCCCCCEECCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]