Click here to switch to the map view.

The map label for this gene is ccmD

Identifier: 51596965

GI number: 51596965

Start: 3125540

End: 3125890

Strand: Reverse

Name: ccmD

Synonym: YPTB2646

Alternate gene names: 51596965

Gene position: 3125890-3125540 (Counterclockwise)

Preceding gene: 51596966

Following gene: 51596964

Centisome position: 65.88

GC content: 50.14

Gene sequence:

>351_bases
ATGACCCCCGCTTTTCACTCATGGGCAGAATTTTTTGCCATGGGCAACTATGCCTTTTATGTCTGGCTCGCTGTGGCAGC
CACCTTGTTATCATTGCTGGGCTTGCTAATGCACACGCTGTGGCAGCACAAACAGCTACTGGCCGATATTCACCGCCGTC
AGGCTCGGGAACAACGTATTCGTCAGGCGCAGCTTAACCAGACATCGATGCATCAAGTACCGTTGTATCAATCACCGTTG
CAACAATCACCATTACATCAAGCACCATTACATCAAGCACCATTACAACAAGCACCGTTACAACAAGCAGCACCCCAGCA
CATCGCCAATTTACAGGAGAAGCGACCGTGA

Upstream 100 bases:

>100_bases
GCTTTATCACACTGACATTAATGCGCTTGCGTAATTTGATTTTGCAGCAAGAGCGCCACCGTCCTTGGGTTACTGCCTTA
TTACTCAAGGAGCCGCGCGT

Downstream 100 bases:

>100_bases
ACCCACGTAGAAAAAGTCGGCTCTATCTGGCGATGGTGGTTCTGATCGGCATCTCTTTGACCACCACGTTGGTGCTGTAT
GCGCTGCGTTCAAATATCGA

Product: heme exporter protein D

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CcmD [H]

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MTPAFHSWAEFFAMGNYAFYVWLAVAATLLSLLGLLMHTLWQHKQLLADIHRRQAREQRIRQAQLNQTSMHQVPLYQSPL
QQSPLHQAPLHQAPLQQAPLQQAAPQHIANLQEKRP

Sequences:

>Translated_116_residues
MTPAFHSWAEFFAMGNYAFYVWLAVAATLLSLLGLLMHTLWQHKQLLADIHRRQAREQRIRQAQLNQTSMHQVPLYQSPL
QQSPLHQAPLHQAPLQQAPLQQAAPQHIANLQEKRP
>Mature_115_residues
TPAFHSWAEFFAMGNYAFYVWLAVAATLLSLLGLLMHTLWQHKQLLADIHRRQAREQRIRQAQLNQTSMHQVPLYQSPLQ
QSPLHQAPLHQAPLQQAPLQQAAPQHIANLQEKRP

Specific function: Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes [H]

COG id: COG3114

COG function: function code U; Heme exporter protein D

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmD/CycX/HelD family [H]

Homologues:

Organism=Escherichia coli, GI1788526, Length=50, Percent_Identity=56, Blast_Score=66, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007078 [H]

Pfam domain/function: PF04995 CcmD [H]

EC number: NA

Molecular weight: Translated: 13389; Mature: 13257

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPAFHSWAEFFAMGNYAFYVWLAVAATLLSLLGLLMHTLWQHKQLLADIHRRQAREQRI
CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQAQLNQTSMHQVPLYQSPLQQSPLHQAPLHQAPLQQAPLQQAAPQHIANLQEKRP
HHHHHCHHHHHHCCCHHCCHHCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TPAFHSWAEFFAMGNYAFYVWLAVAATLLSLLGLLMHTLWQHKQLLADIHRRQAREQRI
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQAQLNQTSMHQVPLYQSPLQQSPLHQAPLHQAPLQQAPLQQAAPQHIANLQEKRP
HHHHHCHHHHHHCCCHHCCHHCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]