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The map label for this gene is rbsB [H]

Identifier: 51596856

GI number: 51596856

Start: 3003973

End: 3004890

Strand: Reverse

Name: rbsB [H]

Synonym: YPTB2537

Alternate gene names: 51596856

Gene position: 3004890-3003973 (Counterclockwise)

Preceding gene: 51596857

Following gene: 51596855

Centisome position: 63.33

GC content: 46.73

Gene sequence:

>918_bases
ATGTTTTCATTTTTCAAAAAAGCCCTGTCATTTAGCATCGCAGGCGTCATGCTGTTTGCCAGCCAAAGTGTCATGGCTAA
GCAAATTGTTATTGGTGTTTCATTTCAAGAATTAAATAACGACTATTTTGTTTCGATGAAAGAGGCATTAGAACAGGCGG
CCAATGATATTGGTGCCAAAGTATATATCGCTGATGCGGGTCATGATGTCTCAAAACAGATTAATGACGTTGAAGACATG
TTGCAAAAGAAAATCGATATTCTGCTTATTAACCCAACGGATTCCGTTGGCGTTCAATCGGCGGTTATGGCAGCGAATAA
AGCGGGTGCGGTTGTGGTGGCCGTTGATGCACAAGCAGAAGGTCCGCTGGACTCTTTCGTGGGTTCAAAGAACTATGATG
CAGGCTTTTTAGCCGGTGAGTATCTGGCGAAAGCACTGGGGGGGAAAGGGAAGGTGGCGATCCTGGATGGCATCCCCGTA
GTGCCAATTCTTGAGCGTGTACGGGGTTTTGAAGATGCGATAAAAAAATACCCAGACATCAAAATTGTCACCAAACAAAA
CGGCAAGCAGAAGCGTGATACGGCCTTGACGGTAACCGAAAACATGTTGCAGTCGGTCCCTGATCTGGCCGGGATTTTCA
GTGTGAATGATGTTGGTGCATTGGGTGCACTGGCAGCAATCGAAAGTAATGGCGCAAAAGTAAAGCTGGTTAGCGTAGAC
GGCCAACCAGAAGCCATTAAAGAGATCCTGAAACCCAATTCACCTTTTATTGCGACTTCCGCACAGTTTCCTCGTGACCA
AATACGTATTGCACTGGGTATCGCGTTGGCCCGTTATTGGGGAGCCAATGTCCCGGCAGCTATTCCGGTCGAAGTGAAAC
TGATCGACAGTAGCAATGCGCAAGGTTTTAGCTGGTAA

Upstream 100 bases:

>100_bases
TATATCATGTGGAATATTAACTTTTTATGATGAAAGTGAAGTAAAAACATACCGTTGTTCTGATAACCAAAAATACACTT
CCCCTACAGGAGAATAATAT

Downstream 100 bases:

>100_bases
GCGTGTCAATTCTCGCTCTGCTCAGGCAGAGCGATAACCCTTCGGAAGCGATAACCATGACGCCTTTATTAGAATTAAAG
CAGATAAAAAAATCTTTTCC

Product: ABC transporter periplasmic sugar-binding protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MFSFFKKALSFSIAGVMLFASQSVMAKQIVIGVSFQELNNDYFVSMKEALEQAANDIGAKVYIADAGHDVSKQINDVEDM
LQKKIDILLINPTDSVGVQSAVMAANKAGAVVVAVDAQAEGPLDSFVGSKNYDAGFLAGEYLAKALGGKGKVAILDGIPV
VPILERVRGFEDAIKKYPDIKIVTKQNGKQKRDTALTVTENMLQSVPDLAGIFSVNDVGALGALAAIESNGAKVKLVSVD
GQPEAIKEILKPNSPFIATSAQFPRDQIRIALGIALARYWGANVPAAIPVEVKLIDSSNAQGFSW

Sequences:

>Translated_305_residues
MFSFFKKALSFSIAGVMLFASQSVMAKQIVIGVSFQELNNDYFVSMKEALEQAANDIGAKVYIADAGHDVSKQINDVEDM
LQKKIDILLINPTDSVGVQSAVMAANKAGAVVVAVDAQAEGPLDSFVGSKNYDAGFLAGEYLAKALGGKGKVAILDGIPV
VPILERVRGFEDAIKKYPDIKIVTKQNGKQKRDTALTVTENMLQSVPDLAGIFSVNDVGALGALAAIESNGAKVKLVSVD
GQPEAIKEILKPNSPFIATSAQFPRDQIRIALGIALARYWGANVPAAIPVEVKLIDSSNAQGFSW
>Mature_305_residues
MFSFFKKALSFSIAGVMLFASQSVMAKQIVIGVSFQELNNDYFVSMKEALEQAANDIGAKVYIADAGHDVSKQINDVEDM
LQKKIDILLINPTDSVGVQSAVMAANKAGAVVVAVDAQAEGPLDSFVGSKNYDAGFLAGEYLAKALGGKGKVAILDGIPV
VPILERVRGFEDAIKKYPDIKIVTKQNGKQKRDTALTVTENMLQSVPDLAGIFSVNDVGALGALAAIESNGAKVKLVSVD
GQPEAIKEILKPNSPFIATSAQFPRDQIRIALGIALARYWGANVPAAIPVEVKLIDSSNAQGFSW

Specific function: Involved in the high-affinity D-ribose membrane transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=296, Percent_Identity=35.472972972973, Blast_Score=131, Evalue=7e-32,
Organism=Escherichia coli, GI1790526, Length=308, Percent_Identity=30.1948051948052, Blast_Score=92, Evalue=4e-20,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 32388; Mature: 32388

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSFFKKALSFSIAGVMLFASQSVMAKQIVIGVSFQELNNDYFVSMKEALEQAANDIGAK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHCCCCEEEEHHHHHHHHHHHCCCE
VYIADAGHDVSKQINDVEDMLQKKIDILLINPTDSVGVQSAVMAANKAGAVVVAVDAQAE
EEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCCEEEEEEECCCC
GPLDSFVGSKNYDAGFLAGEYLAKALGGKGKVAILDGIPVVPILERVRGFEDAIKKYPDI
CCHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHCCHHHHHHHCCCE
KIVTKQNGKQKRDTALTVTENMLQSVPDLAGIFSVNDVGALGALAAIESNGAKVKLVSVD
EEEECCCCCCCHHHHHHHHHHHHHHCCHHHHEECCCCCHHHHHHHHEECCCCEEEEEEEC
GQPEAIKEILKPNSPFIATSAQFPRDQIRIALGIALARYWGANVPAAIPVEVKLIDSSNA
CCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEECEEEEEEEECCCC
QGFSW
CCCCC
>Mature Secondary Structure
MFSFFKKALSFSIAGVMLFASQSVMAKQIVIGVSFQELNNDYFVSMKEALEQAANDIGAK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHCCCCEEEEHHHHHHHHHHHCCCE
VYIADAGHDVSKQINDVEDMLQKKIDILLINPTDSVGVQSAVMAANKAGAVVVAVDAQAE
EEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCCEEEEEEECCCC
GPLDSFVGSKNYDAGFLAGEYLAKALGGKGKVAILDGIPVVPILERVRGFEDAIKKYPDI
CCHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHCCHHHHHHHCCCE
KIVTKQNGKQKRDTALTVTENMLQSVPDLAGIFSVNDVGALGALAAIESNGAKVKLVSVD
EEEECCCCCCCHHHHHHHHHHHHHHCCHHHHEECCCCCHHHHHHHHEECCCCEEEEEEEC
GQPEAIKEILKPNSPFIATSAQFPRDQIRIALGIALARYWGANVPAAIPVEVKLIDSSNA
CCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEECEEEEEEEECCCC
QGFSW
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377; 7921236 [H]