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The map label for this gene is kdgF

Identifier: 51596679

GI number: 51596679

Start: 2775515

End: 2775847

Strand: Reverse

Name: kdgF

Synonym: YPTB2355

Alternate gene names: 51596679

Gene position: 2775847-2775515 (Counterclockwise)

Preceding gene: 51596690

Following gene: 51596677

Centisome position: 58.5

GC content: 42.64

Gene sequence:

>333_bases
ATGAAAATGTTCTTTATCAATGATGAAACTCCTTGGGAAGCGTTAGGCAATGGCATTAAACGCAAAGTGATGACCTGGAG
CGATGAGCTGATGATGGTCTGTGTTCACTTTGAAAAAGGGGCTATTGGTGTCGCTCATAAACACGATATCCATGACCAGA
TTGCTTATGTTGCAGCAGGTAGCTTCGAAGTAGAGATTGAAGGGCAAAAACGTATTTTGAAAGCAGGGGATGCGTATCGC
GCGGTGAAAAATGAAATGCACGGTGCAGTATCGTTGGAAGACAACAGCATCTTGATTGATACTTTTACGCCTAAACGGGA
TGATTTTCTCTAA

Upstream 100 bases:

>100_bases
ATGGTCACCCTACGGATTTTACCCGTAGAATGCACCCGATTCAGCGTAAAACTGTGACTGCGCTACACCAGAAACTTATT
CTGTAAAATGAGGCAAGATA

Downstream 100 bases:

>100_bases
AATATATTCGGCGGCTGAGTCACTGACTCTGGCCGCCCTTTATTACCGCTGACGACAGCAATATCCTTTCCACTCCGTAT
CGCTATAGCGACTTTTTTAC

Product: pectin degradation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 110

Protein sequence:

>110_residues
MKMFFINDETPWEALGNGIKRKVMTWSDELMMVCVHFEKGAIGVAHKHDIHDQIAYVAAGSFEVEIEGQKRILKAGDAYR
AVKNEMHGAVSLEDNSILIDTFTPKRDDFL

Sequences:

>Translated_110_residues
MKMFFINDETPWEALGNGIKRKVMTWSDELMMVCVHFEKGAIGVAHKHDIHDQIAYVAAGSFEVEIEGQKRILKAGDAYR
AVKNEMHGAVSLEDNSILIDTFTPKRDDFL
>Mature_110_residues
MKMFFINDETPWEALGNGIKRKVMTWSDELMMVCVHFEKGAIGVAHKHDIHDQIAYVAAGSFEVEIEGQKRILKAGDAYR
AVKNEMHGAVSLEDNSILIDTFTPKRDDFL

Specific function: May have a role in pathogenicity [H]

COG id: COG1917

COG function: function code S; Uncharacterized conserved protein, contains double-stranded beta-helix domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2 [H]

EC number: NA

Molecular weight: Translated: 12469; Mature: 12469

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMFFINDETPWEALGNGIKRKVMTWSDELMMVCVHFEKGAIGVAHKHDIHDQIAYVAAG
CEEEEECCCCCHHHHCCHHHHEEECCCCCEEEEEEEECCCCEECCCCCCCHHHEEEEECC
SFEVEIEGQKRILKAGDAYRAVKNEMHGAVSLEDNSILIDTFTPKRDDFL
CEEEEECCCEEEEECCCHHHHHHHHCCCEEEECCCEEEEEECCCCCCCCC
>Mature Secondary Structure
MKMFFINDETPWEALGNGIKRKVMTWSDELMMVCVHFEKGAIGVAHKHDIHDQIAYVAAG
CEEEEECCCCCHHHHCCHHHHEEECCCCCEEEEEEEECCCCEECCCCCCCHHHEEEEECC
SFEVEIEGQKRILKAGDAYRAVKNEMHGAVSLEDNSILIDTFTPKRDDFL
CEEEEECCCEEEEECCCHHHHHHHHCCCEEEECCCEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1766386 [H]