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The map label for this gene is ydhB [H]

Identifier: 51596625

GI number: 51596625

Start: 2714488

End: 2715420

Strand: Reverse

Name: ydhB [H]

Synonym: YPTB2301

Alternate gene names: 51596625

Gene position: 2715420-2714488 (Counterclockwise)

Preceding gene: 51596628

Following gene: 51596621

Centisome position: 57.23

GC content: 50.27

Gene sequence:

>933_bases
ATGTGGTCAGAATATTCTCTGGATGTGGTCGATGCGGTCGCACGCACTGGCGGCTTTAGTGCGGCAGCACAAGAATTGCA
CCGTGTGCCTTCAGCGGTGAGTTATACCGTTCGGCAATTAGAAGACTGGCTTGCGGTTCCTCTGTTTGAACGACGTCATC
GTGATGTGGAACTGACGGAGGCGGGTGTCGTTTTTCTTAAAGAAGCCCGCGATGTTATCAAAAAAATGAATGACACGCGT
CGTCAGTGCCAGCAAGTTGCGAATGGCTGGCGCGGGCAGTTAAACATTGTGGTAGATAAAATCGTCAAACCTCAGCGCAG
CCGCCGTTTAGTGTTAGATTTTTACCGTCATTTTCCTGATGTTGAATTACGTGTGCGTTATGAGGTTTTTAATGGGGTTT
GGGATGCACTGAGCGATGGCCGTGCGGATATTGCCATAGGGGCGACCCGTGCCATCCCAGTGGGTGGGCGTTTTGTCTTT
CGTGATATGGGCTTTCTTAGCTGGCTATGCGTTGTGAGTGTCGATCACCCATTAGCGTTACTATCAGGGCCGTTAAGCGA
TGAACAATTGCGGCCTTATCCCTCACTTTGTCTGGAAGACACGGCACTCAATTTACCCAAGCGGGATACATGGACGCTAG
ATAACCAGCAACGATTGGTTGCACCGGATTGGTCAACAGGAATCGATTGTTTGTGTGCGGGACTGTGTATGGGCATGGTG
CCCGCCCATATGGTATCGCCCTTGATTGCACAGGGAAAATTAGCGGCGATCACGTTGGCAGAGCCGTTACCCGATAGCCC
GTGCTGTCTGACATGGGAGCAGAATAATCACTCTCCCGCACTGGCTTGGTTACTTGATTATCTAGGTGACAGTGTCACGC
TAAATACTGAGTGGTTAAGGGATGATAGCCAGCAATTGATAGCAAACAATTGA

Upstream 100 bases:

>100_bases
CATTCTATCCAATGGCATCTTCTGTTGTGAAACGGTAATATTTGCAAGGTGCTGTTAAAAATTTTGATGGCAAGATGAGC
AGGCTAAAAGGTAGGCAGTA

Downstream 100 bases:

>100_bases
TAGCCAACCATCGATAGCAAATAACCGCAGGGAATGCGGTTATCCGAATCGGGCCGGCAGTGCTGAATACGACCGGCCAA
GGCAAACATCAACGGCGATA

Product: DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MWSEYSLDVVDAVARTGGFSAAAQELHRVPSAVSYTVRQLEDWLAVPLFERRHRDVELTEAGVVFLKEARDVIKKMNDTR
RQCQQVANGWRGQLNIVVDKIVKPQRSRRLVLDFYRHFPDVELRVRYEVFNGVWDALSDGRADIAIGATRAIPVGGRFVF
RDMGFLSWLCVVSVDHPLALLSGPLSDEQLRPYPSLCLEDTALNLPKRDTWTLDNQQRLVAPDWSTGIDCLCAGLCMGMV
PAHMVSPLIAQGKLAAITLAEPLPDSPCCLTWEQNNHSPALAWLLDYLGDSVTLNTEWLRDDSQQLIANN

Sequences:

>Translated_310_residues
MWSEYSLDVVDAVARTGGFSAAAQELHRVPSAVSYTVRQLEDWLAVPLFERRHRDVELTEAGVVFLKEARDVIKKMNDTR
RQCQQVANGWRGQLNIVVDKIVKPQRSRRLVLDFYRHFPDVELRVRYEVFNGVWDALSDGRADIAIGATRAIPVGGRFVF
RDMGFLSWLCVVSVDHPLALLSGPLSDEQLRPYPSLCLEDTALNLPKRDTWTLDNQQRLVAPDWSTGIDCLCAGLCMGMV
PAHMVSPLIAQGKLAAITLAEPLPDSPCCLTWEQNNHSPALAWLLDYLGDSVTLNTEWLRDDSQQLIANN
>Mature_310_residues
MWSEYSLDVVDAVARTGGFSAAAQELHRVPSAVSYTVRQLEDWLAVPLFERRHRDVELTEAGVVFLKEARDVIKKMNDTR
RQCQQVANGWRGQLNIVVDKIVKPQRSRRLVLDFYRHFPDVELRVRYEVFNGVWDALSDGRADIAIGATRAIPVGGRFVF
RDMGFLSWLCVVSVDHPLALLSGPLSDEQLRPYPSLCLEDTALNLPKRDTWTLDNQQRLVAPDWSTGIDCLCAGLCMGMV
PAHMVSPLIAQGKLAAITLAEPLPDSPCCLTWEQNNHSPALAWLLDYLGDSVTLNTEWLRDDSQQLIANN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787949, Length=304, Percent_Identity=70.3947368421053, Blast_Score=457, Evalue=1e-130,
Organism=Escherichia coli, GI1786508, Length=285, Percent_Identity=32.6315789473684, Blast_Score=186, Evalue=1e-48,
Organism=Escherichia coli, GI1786713, Length=298, Percent_Identity=32.2147651006711, Blast_Score=161, Evalue=4e-41,
Organism=Escherichia coli, GI87082024, Length=302, Percent_Identity=29.1390728476821, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1789492, Length=280, Percent_Identity=31.0714285714286, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI157672245, Length=176, Percent_Identity=31.8181818181818, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787601, Length=284, Percent_Identity=24.6478873239437, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788748, Length=281, Percent_Identity=22.7758007117438, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34840; Mature: 34840

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWSEYSLDVVDAVARTGGFSAAAQELHRVPSAVSYTVRQLEDWLAVPLFERRHRDVELTE
CCCCCCHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCHHHHHCCCCCEEHH
AGVVFLKEARDVIKKMNDTRRQCQQVANGWRGQLNIVVDKIVKPQRSRRLVLDFYRHFPD
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHCCCHHHHHHHHHHHCCCC
VELRVRYEVFNGVWDALSDGRADIAIGATRAIPVGGRFVFRDMGFLSWLCVVSVDHPLAL
CEEEEHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCHHHHHHHHHHHHHHHCCCCCHHH
LSGPLSDEQLRPYPSLCLEDTALNLPKRDTWTLDNQQRLVAPDWSTGIDCLCAGLCMGMV
HCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEECCCCCEEECCCCCCCHHHHHHHHHHHHH
PAHMVSPLIAQGKLAAITLAEPLPDSPCCLTWEQNNHSPALAWLLDYLGDSVTLNTEWLR
HHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEECHHHHC
DDSQQLIANN
CCHHHHHCCC
>Mature Secondary Structure
MWSEYSLDVVDAVARTGGFSAAAQELHRVPSAVSYTVRQLEDWLAVPLFERRHRDVELTE
CCCCCCHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCHHHHHCCCCCEEHH
AGVVFLKEARDVIKKMNDTRRQCQQVANGWRGQLNIVVDKIVKPQRSRRLVLDFYRHFPD
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHCCCHHHHHHHHHHHCCCC
VELRVRYEVFNGVWDALSDGRADIAIGATRAIPVGGRFVFRDMGFLSWLCVVSVDHPLAL
CEEEEHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCHHHHHHHHHHHHHHHCCCCCHHH
LSGPLSDEQLRPYPSLCLEDTALNLPKRDTWTLDNQQRLVAPDWSTGIDCLCAGLCMGMV
HCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEECCCCCEEECCCCCCCHHHHHHHHHHHHH
PAHMVSPLIAQGKLAAITLAEPLPDSPCCLTWEQNNHSPALAWLLDYLGDSVTLNTEWLR
HHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEECHHHHC
DDSQQLIANN
CCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]