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The map label for this gene is ydgD [H]

Identifier: 51596562

GI number: 51596562

Start: 2642492

End: 2643334

Strand: Direct

Name: ydgD [H]

Synonym: YPTB2238

Alternate gene names: 51596562

Gene position: 2642492-2643334 (Clockwise)

Preceding gene: 51596561

Following gene: 51596566

Centisome position: 55.69

GC content: 46.03

Gene sequence:

>843_bases
ATGCGTTTATTTTTATTATTACTTAGCTTGCTACTTATTTCCATTACCACCGCTTTCGCTCTAGATAAACCGGGCGGAAG
TAACAGCATTGAGGACCAAACAGCCCTATTTTTTGGTAAAGATGATCGTACTGCGGTAACAAACAGCCGCCAATGGCCAT
GGGAAGCGATTGGGCAAGTTGAAACGGCCAGCGGCAACCTTTGTACTGCAACATTAATTTCCCCACGATTGGTATTAACC
GCCGGCCATTGTGTCTTGACTCCTCCGGGTAATATTGACCAAGCCGTCGCGTTGCGATTCATTTCCGATAAGGGCCACTG
GAAATATCAAATTACGGATCTGAAAACACGGGTTGATGCCAAATTAGGCCAGAAACTCAAAGCCGATGGTGATGGTGATG
GCTGGATTGTGCCACCTGCCGCCGCTGCCTATGATTTTGCATTAATCCAATTAACAAATGCAGCGCCTATCCCCATCAAG
CCATTGCCTTTATGGGAAGGTACTGCAAATGAACTGACAAAAGCGCTTAAATTGGTTAACCGTAAGGTAACGCAAGCCGG
TTATCCACTCGACAACCTCAATACACTTTATAAGCATGAAGATTGTTTAGTAACCGGTTGGGCACAGCAAGGTGTTCTGG
CTCACCAATGCGATACGCTGCCAGGTGACAGCGGCTCACCTCTGCTGCTAAAAAATGGCAATAGTTGGTCATTGATTGCC
ATTCAAAGTTCCGCGCCCGCAGCCAAGGAGCGTTATTTAGCTGACAACCGGGCATTATCAGTCACTGCGATTAATAACCG
TTTGAAAAAATTGGTCAATAAGATAGCCGATACAACTCAGTAA

Upstream 100 bases:

>100_bases
GTTAGCCATAGCATAACCACTATGAGCAGCTTTATCAGCAAGGTTCAAGGTGTGTTAATGGATGATTCCTTAGTCAGTAA
AAAAGCAAGGTTAATTATTT

Downstream 100 bases:

>100_bases
TTTTACCTTAGCCCGCTAAATATTATGCGATCTTGTATTTATTGAGGTGAGTCCTTTACTCCTTAGTCGCATAAGATGAG
TTTGGGTTGAATTGAAAAAC

Product: pepetidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MRLFLLLLSLLLISITTAFALDKPGGSNSIEDQTALFFGKDDRTAVTNSRQWPWEAIGQVETASGNLCTATLISPRLVLT
AGHCVLTPPGNIDQAVALRFISDKGHWKYQITDLKTRVDAKLGQKLKADGDGDGWIVPPAAAAYDFALIQLTNAAPIPIK
PLPLWEGTANELTKALKLVNRKVTQAGYPLDNLNTLYKHEDCLVTGWAQQGVLAHQCDTLPGDSGSPLLLKNGNSWSLIA
IQSSAPAAKERYLADNRALSVTAINNRLKKLVNKIADTTQ

Sequences:

>Translated_280_residues
MRLFLLLLSLLLISITTAFALDKPGGSNSIEDQTALFFGKDDRTAVTNSRQWPWEAIGQVETASGNLCTATLISPRLVLT
AGHCVLTPPGNIDQAVALRFISDKGHWKYQITDLKTRVDAKLGQKLKADGDGDGWIVPPAAAAYDFALIQLTNAAPIPIK
PLPLWEGTANELTKALKLVNRKVTQAGYPLDNLNTLYKHEDCLVTGWAQQGVLAHQCDTLPGDSGSPLLLKNGNSWSLIA
IQSSAPAAKERYLADNRALSVTAINNRLKKLVNKIADTTQ
>Mature_280_residues
MRLFLLLLSLLLISITTAFALDKPGGSNSIEDQTALFFGKDDRTAVTNSRQWPWEAIGQVETASGNLCTATLISPRLVLT
AGHCVLTPPGNIDQAVALRFISDKGHWKYQITDLKTRVDAKLGQKLKADGDGDGWIVPPAAAAYDFALIQLTNAAPIPIK
PLPLWEGTANELTKALKLVNRKVTQAGYPLDNLNTLYKHEDCLVTGWAQQGVLAHQCDTLPGDSGSPLLLKNGNSWSLIA
IQSSAPAAKERYLADNRALSVTAINNRLKKLVNKIADTTQ

Specific function: Unknown

COG id: COG3591

COG function: function code E; V8-like Glu-specific endopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S1B family [H]

Homologues:

Organism=Escherichia coli, GI1787882, Length=265, Percent_Identity=61.8867924528302, Blast_Score=317, Evalue=7e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009003
- InterPro:   IPR018114
- InterPro:   IPR001254
- InterPro:   IPR008256 [H]

Pfam domain/function: PF00089 Trypsin [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 30306; Mature: 30306

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: PS00134 TRYPSIN_HIS ; PS00135 TRYPSIN_SER ; PS50240 TRYPSIN_DOM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLFLLLLSLLLISITTAFALDKPGGSNSIEDQTALFFGKDDRTAVTNSRQWPWEAIGQV
CHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCEEEEECCCCCEECCCCCCCCHHHHCCE
ETASGNLCTATLISPRLVLTAGHCVLTPPGNIDQAVALRFISDKGHWKYQITDLKTRVDA
EECCCCEEEEEECCCEEEEEECCEEECCCCCCCHHHEEEEECCCCCEEEEEEHHHHHHHH
KLGQKLKADGDGDGWIVPPAAAAYDFALIQLTNAAPIPIKPLPLWEGTANELTKALKLVN
HHCCCCCCCCCCCCEEECCCHHHHEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH
RKVTQAGYPLDNLNTLYKHEDCLVTGWAQQGVLAHQCDTLPGDSGSPLLLKNGNSWSLIA
HHHHHCCCCHHHHHHHHCCCCEEEECCHHCCCHHHHCCCCCCCCCCEEEEECCCCEEEEE
IQSSAPAAKERYLADNRALSVTAINNRLKKLVNKIADTTQ
EECCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRLFLLLLSLLLISITTAFALDKPGGSNSIEDQTALFFGKDDRTAVTNSRQWPWEAIGQV
CHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCEEEEECCCCCEECCCCCCCCHHHHCCE
ETASGNLCTATLISPRLVLTAGHCVLTPPGNIDQAVALRFISDKGHWKYQITDLKTRVDA
EECCCCEEEEEECCCEEEEEECCEEECCCCCCCHHHEEEEECCCCCEEEEEEHHHHHHHH
KLGQKLKADGDGDGWIVPPAAAAYDFALIQLTNAAPIPIKPLPLWEGTANELTKALKLVN
HHCCCCCCCCCCCCEEECCCHHHHEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH
RKVTQAGYPLDNLNTLYKHEDCLVTGWAQQGVLAHQCDTLPGDSGSPLLLKNGNSWSLIA
HHHHHCCCCHHHHHHHHCCCCEEEECCHHCCCHHHHCCCCCCCCCCEEEEECCCCEEEEE
IQSSAPAAKERYLADNRALSVTAINNRLKKLVNKIADTTQ
EECCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]