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The map label for this gene is araC

Identifier: 51596503

GI number: 51596503

Start: 2562367

End: 2563299

Strand: Direct

Name: araC

Synonym: YPTB2177

Alternate gene names: 51596503

Gene position: 2562367-2563299 (Clockwise)

Preceding gene: 51596502

Following gene: 51596504

Centisome position: 54.01

GC content: 48.34

Gene sequence:

>933_bases
ATGTATCAACGCATGGTTCAGGAACCGCAACCCAATCCTTTGCTACCAGGCTACACGTTCAATGCTTATCTGGTCGCAGG
ATTAACCCCGATTCTGGCTGACGGCCCACTCGATTTCTTCATTGATCGGCCTGGCGGCATGAAGGGCTATATTCTGAATT
TGACCATTAAGGGGCAGGGGAAGATTTTCGATGGTGAAAATACCATCTACAGTAATCCTGGTGATTTACTGTTGTTCCCA
CCTAAGTCGCCTCACCATTATGGTCGTTCACCGAATAGTGATTGTTGGTATCACCGCTGGGTCTATTTCCGACCACGGGC
TTATTGGGCCGATTGGTTGGAATGGCACAGTAAAACCCATGAGGTAGGGCGTTTATCTTTACCTAACAATAACTTAATGC
TGGAGTTTGACCGCTTATTTGCCAATATTGAGCAGACACAGAAATCGGGGCGGCGCTTCGGTGAAGAGTTGGGTATGAAT
TTGCTCGAGCGGTTACTGCTACGAGCAATGGAAGAAGACCCACTTAGTCCACAACGTATTATGGATCCACGTATTATTGA
GGCCTGTCAATTTATTACCGGAAATCTGGCAGGGGAATTACGTATTGACGAAGTTGCCCGCCATGTTTGCCTATCACCAT
CACGCTTAGCGCATTTATTCCGTGAACAGGTTGGCATTAATATATTACGTTGGCGTGAGGATCAGCGGGTGATCCGGGCG
AAATTATTACTGCAAACGACCCAAGAGCCAATTGCGACCATTGGCCGGGTGGTAGGCTATGATGACCAACTCTATTTTTC
CCGTGTTTTCCGTAAACGAGTGGGGGTCAGCCCCAGCGATTTCAGGCGGCGCAGTATCGAAACTAACTATCCACAACGTA
CTTTTCGTCCAGCGGACTGGCAGGATAATCAGGGGGCATTGGTGCGGGTTTAA

Upstream 100 bases:

>100_bases
CTTTTATTCATCCGAGCTCACTGACGTGAACCTGATTGTATAAAACTGACTGCATAAAACTGATCATATAAAACCGATTA
TATGAAACCGAGGAGCCAAA

Downstream 100 bases:

>100_bases
TCCCGCCCGTTACGGTTAAGCAGAAATTACCCCTTGTCCCTGGATGCATCATAGTGTCAAATCGATTAATCGTGTGATAT
CTAATTGCGATATCAAATAG

Product: DNA-binding transcriptional regulator AraC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MYQRMVQEPQPNPLLPGYTFNAYLVAGLTPILADGPLDFFIDRPGGMKGYILNLTIKGQGKIFDGENTIYSNPGDLLLFP
PKSPHHYGRSPNSDCWYHRWVYFRPRAYWADWLEWHSKTHEVGRLSLPNNNLMLEFDRLFANIEQTQKSGRRFGEELGMN
LLERLLLRAMEEDPLSPQRIMDPRIIEACQFITGNLAGELRIDEVARHVCLSPSRLAHLFREQVGINILRWREDQRVIRA
KLLLQTTQEPIATIGRVVGYDDQLYFSRVFRKRVGVSPSDFRRRSIETNYPQRTFRPADWQDNQGALVRV

Sequences:

>Translated_310_residues
MYQRMVQEPQPNPLLPGYTFNAYLVAGLTPILADGPLDFFIDRPGGMKGYILNLTIKGQGKIFDGENTIYSNPGDLLLFP
PKSPHHYGRSPNSDCWYHRWVYFRPRAYWADWLEWHSKTHEVGRLSLPNNNLMLEFDRLFANIEQTQKSGRRFGEELGMN
LLERLLLRAMEEDPLSPQRIMDPRIIEACQFITGNLAGELRIDEVARHVCLSPSRLAHLFREQVGINILRWREDQRVIRA
KLLLQTTQEPIATIGRVVGYDDQLYFSRVFRKRVGVSPSDFRRRSIETNYPQRTFRPADWQDNQGALVRV
>Mature_310_residues
MYQRMVQEPQPNPLLPGYTFNAYLVAGLTPILADGPLDFFIDRPGGMKGYILNLTIKGQGKIFDGENTIYSNPGDLLLFP
PKSPHHYGRSPNSDCWYHRWVYFRPRAYWADWLEWHSKTHEVGRLSLPNNNLMLEFDRLFANIEQTQKSGRRFGEELGMN
LLERLLLRAMEEDPLSPQRIMDPRIIEACQFITGNLAGELRIDEVARHVCLSPSRLAHLFREQVGINILRWREDQRVIRA
KLLLQTTQEPIATIGRVVGYDDQLYFSRVFRKRVGVSPSDFRRRSIETNYPQRTFRPADWQDNQGALVRV

Specific function: This protein controls the expression of at least six genes that are involved in the transport and catabolism of L- arabinose. It regulates initiation of transcription of the araBAD operon and it also controls its own synthesis. The L-arabinose operon disp

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=278, Percent_Identity=58.273381294964, Blast_Score=318, Evalue=4e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36116; Mature: 36116

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYQRMVQEPQPNPLLPGYTFNAYLVAGLTPILADGPLDFFIDRPGGMKGYILNLTIKGQG
CCCHHHCCCCCCCCCCCCCHHHHHHHCCCHHHCCCCCEEEEECCCCCCEEEEEEEECCCC
KIFDGENTIYSNPGDLLLFPPKSPHHYGRSPNSDCWYHRWVYFRPRAYWADWLEWHSKTH
EEECCCCCEECCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHH
EVGRLSLPNNNLMLEFDRLFANIEQTQKSGRRFGEELGMNLLERLLLRAMEEDPLSPQRI
CCCEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
MDPRIIEACQFITGNLAGELRIDEVARHVCLSPSRLAHLFREQVGINILRWREDQRVIRA
CCHHHHHHHHHHHCCCCCCEEHHHHHHHHCCCHHHHHHHHHHHHCCEEEEECHHHHHHHH
KLLLQTTQEPIATIGRVVGYDDQLYFSRVFRKRVGVSPSDFRRRSIETNYPQRTFRPADW
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCC
QDNQGALVRV
CCCCCCEEEC
>Mature Secondary Structure
MYQRMVQEPQPNPLLPGYTFNAYLVAGLTPILADGPLDFFIDRPGGMKGYILNLTIKGQG
CCCHHHCCCCCCCCCCCCCHHHHHHHCCCHHHCCCCCEEEEECCCCCCEEEEEEEECCCC
KIFDGENTIYSNPGDLLLFPPKSPHHYGRSPNSDCWYHRWVYFRPRAYWADWLEWHSKTH
EEECCCCCEECCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHH
EVGRLSLPNNNLMLEFDRLFANIEQTQKSGRRFGEELGMNLLERLLLRAMEEDPLSPQRI
CCCEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
MDPRIIEACQFITGNLAGELRIDEVARHVCLSPSRLAHLFREQVGINILRWREDQRVIRA
CCHHHHHHHHHHHCCCCCCEEHHHHHHHHCCCHHHHHHHHHHHHCCEEEEECHHHHHHHH
KLLLQTTQEPIATIGRVVGYDDQLYFSRVFRKRVGVSPSDFRRRSIETNYPQRTFRPADW
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCC
QDNQGALVRV
CCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3902795 [H]