Click here to switch to the map view.

The map label for this gene is ydcR [H]

Identifier: 51596284

GI number: 51596284

Start: 2304769

End: 2306190

Strand: Direct

Name: ydcR [H]

Synonym: YPTB1958

Alternate gene names: 51596284

Gene position: 2304769-2306190 (Clockwise)

Preceding gene: 51596281

Following gene: 51596285

Centisome position: 48.58

GC content: 51.34

Gene sequence:

>1422_bases
ATGACACGATATGAACAGCTAGCGCAGCAAATCAGAGCACAAATACAATCGAAGGTCTGGCAAGCGGGCGATAAGCTCCC
TTCGCTGCGAGAAAGTTGTAAACAATCAGGGCTAAGCCTGATGACCGTGGTGCAATCGTATCAGTTGTTGGAAAGCCAGG
GGTGGATCGTTGCCCGCCCACAATCGGGCTACTATGTGGCCTCACGGCCCACGCAGTTACCGCAACCACAGCGGGGTAAT
AAGCTCCATCTGGATGAACAGGTTGATATCAATACCTTTATTTTTAATGTGTTACAGGCAGGGAAAGATCCGGCAATCAT
GCCGTTCGGTTCAGCATTTCCAGATCCGAGTTTATTGTTACAACCGCGTTTGTCGCGGGCGTTGGCCAGCGTCGCTCGCA
AGATCTCGCCACAAAGTTCTGTAACGAATTTGCCACCGGGTAATGAAAGTTTACGGCGCAATATTGCGCAACGTTATGCT
GCCTGCGGGATGAATGTATCACCCGAGGAAATTGTGATTACGGCAGGGGCGATGGAGTCACTGAGCCTTAGCTTACAAGC
CGTGACACAGCCCGGTGATTGGGTCGTTATTGAATCGCCCGCGTTTTATGGTGCATTACAGGCGATTGAACGCCTACGAC
TTAAGGCTATTGCCATTACGACGGATCCCCAGCAAGGTGTGGATTTGGAGGCCCTTGAGCAGGTTATCAGCCAGTATCCG
ATAAAAGCGTGCTGGTTAATGCCCCATTTTCAAAACCCAATGGGGGCCACCATGCCGTGGTCACAGAAACAGCGACTCGT
CACCCTGCTACAGCAGAAGGCTATTTCACTGATTGAAGATGATGTATATGGCGAACTGTATTTTGGTGCTGAACGCTTGC
TACCGGCAAAAGCGCTTGACCAGCATCGGCAGATTTTACATTGCTCCTCTTTTTCTAAATGCCTGGCGCCGGGGTTCCGT
GTGGGGTGGGTGGCAGCAGGTGAACATGCTCAGCGTATTCAACATTTACAGTTGATGAGCACCGTTTCGGCCAGCGTCCC
GACCCAACTGGCGATTGCGGATTATCTGAGCCAAGGGGGATACGATACTCACCTGCGCCGCTTGCGTCGGGTAATGGAAC
AGCGGATGAGCACGTTGCATCAGGCCGTTGTTGAACACTTCCCCAAAAACATCAAAATCAGCCACCCCGCTGGCGGCTAT
TTCTTATGGTTAGAATTGGAGCCACCTTTTAATGCCAGTGAACTGTACCGACGGGCACTGGAGCAGGGGGTTAGCATTGC
TCCTGGGAGAATGTTCACCACAGGGAGTCAGTTTGATCATTGCTTTCGCCTTAATGCCTCCTTTGCCTGGTCAGAACAAA
GCGCAAAAGCGATTCGTATTTTGGCGAAGTTAATCGGCCAATTGACGAACGAACGTCGATAG

Upstream 100 bases:

>100_bases
GTGGTGAGTATTTCAGGGGAAACTTGGCAGGTAGTTAACCATAAGTTAAAGTGGCTATAATAGTGAAAATTAATTGAATT
TTATCTATAACAGATGGCTT

Downstream 100 bases:

>100_bases
CCGTAGAGGCTATTAATGATCATTAATCAACATCAACATCAACATCAACATCAACATCAACATCAACATCAACATCAACA
TCTTCGATCTGTTGACCCAG

Product: GntR family regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 473; Mature: 472

Protein sequence:

>473_residues
MTRYEQLAQQIRAQIQSKVWQAGDKLPSLRESCKQSGLSLMTVVQSYQLLESQGWIVARPQSGYYVASRPTQLPQPQRGN
KLHLDEQVDINTFIFNVLQAGKDPAIMPFGSAFPDPSLLLQPRLSRALASVARKISPQSSVTNLPPGNESLRRNIAQRYA
ACGMNVSPEEIVITAGAMESLSLSLQAVTQPGDWVVIESPAFYGALQAIERLRLKAIAITTDPQQGVDLEALEQVISQYP
IKACWLMPHFQNPMGATMPWSQKQRLVTLLQQKAISLIEDDVYGELYFGAERLLPAKALDQHRQILHCSSFSKCLAPGFR
VGWVAAGEHAQRIQHLQLMSTVSASVPTQLAIADYLSQGGYDTHLRRLRRVMEQRMSTLHQAVVEHFPKNIKISHPAGGY
FLWLELEPPFNASELYRRALEQGVSIAPGRMFTTGSQFDHCFRLNASFAWSEQSAKAIRILAKLIGQLTNERR

Sequences:

>Translated_473_residues
MTRYEQLAQQIRAQIQSKVWQAGDKLPSLRESCKQSGLSLMTVVQSYQLLESQGWIVARPQSGYYVASRPTQLPQPQRGN
KLHLDEQVDINTFIFNVLQAGKDPAIMPFGSAFPDPSLLLQPRLSRALASVARKISPQSSVTNLPPGNESLRRNIAQRYA
ACGMNVSPEEIVITAGAMESLSLSLQAVTQPGDWVVIESPAFYGALQAIERLRLKAIAITTDPQQGVDLEALEQVISQYP
IKACWLMPHFQNPMGATMPWSQKQRLVTLLQQKAISLIEDDVYGELYFGAERLLPAKALDQHRQILHCSSFSKCLAPGFR
VGWVAAGEHAQRIQHLQLMSTVSASVPTQLAIADYLSQGGYDTHLRRLRRVMEQRMSTLHQAVVEHFPKNIKISHPAGGY
FLWLELEPPFNASELYRRALEQGVSIAPGRMFTTGSQFDHCFRLNASFAWSEQSAKAIRILAKLIGQLTNERR
>Mature_472_residues
TRYEQLAQQIRAQIQSKVWQAGDKLPSLRESCKQSGLSLMTVVQSYQLLESQGWIVARPQSGYYVASRPTQLPQPQRGNK
LHLDEQVDINTFIFNVLQAGKDPAIMPFGSAFPDPSLLLQPRLSRALASVARKISPQSSVTNLPPGNESLRRNIAQRYAA
CGMNVSPEEIVITAGAMESLSLSLQAVTQPGDWVVIESPAFYGALQAIERLRLKAIAITTDPQQGVDLEALEQVISQYPI
KACWLMPHFQNPMGATMPWSQKQRLVTLLQQKAISLIEDDVYGELYFGAERLLPAKALDQHRQILHCSSFSKCLAPGFRV
GWVAAGEHAQRIQHLQLMSTVSASVPTQLAIADYLSQGGYDTHLRRLRRVMEQRMSTLHQAVVEHFPKNIKISHPAGGYF
LWLELEPPFNASELYRRALEQGVSIAPGRMFTTGSQFDHCFRLNASFAWSEQSAKAIRILAKLIGQLTNERR

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=319, Percent_Identity=26.6457680250784, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI33469970, Length=319, Percent_Identity=26.6457680250784, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI4507369, Length=181, Percent_Identity=24.3093922651934, Blast_Score=77, Evalue=4e-14,
Organism=Escherichia coli, GI1787710, Length=465, Percent_Identity=56.7741935483871, Blast_Score=559, Evalue=1e-160,
Organism=Escherichia coli, GI1790797, Length=469, Percent_Identity=35.181236673774, Blast_Score=300, Evalue=1e-82,
Organism=Saccharomyces cerevisiae, GI6321000, Length=243, Percent_Identity=27.1604938271605, Blast_Score=84, Evalue=5e-17,
Organism=Drosophila melanogaster, GI21356535, Length=374, Percent_Identity=23.7967914438503, Blast_Score=86, Evalue=4e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 52855; Mature: 52724

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRYEQLAQQIRAQIQSKVWQAGDKLPSLRESCKQSGLSLMTVVQSYQLLESQGWIVARP
CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECC
QSGYYVASRPTQLPQPQRGNKLHLDEQVDINTFIFNVLQAGKDPAIMPFGSAFPDPSLLL
CCCEEEECCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
QPRLSRALASVARKISPQSSVTNLPPGNESLRRNIAQRYAACGMNVSPEEIVITAGAMES
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHH
LSLSLQAVTQPGDWVVIESPAFYGALQAIERLRLKAIAITTDPQQGVDLEALEQVISQYP
HHEEEEEECCCCCEEEECCCHHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHCC
IKACWLMPHFQNPMGATMPWSQKQRLVTLLQQKAISLIEDDVYGELYFGAERLLPAKALD
CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHH
QHRQILHCSSFSKCLAPGFRVGWVAAGEHAQRIQHLQLMSTVSASVPTQLAIADYLSQGG
HHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
YDTHLRRLRRVMEQRMSTLHQAVVEHFPKNIKISHPAGGYFLWLELEPPFNASELYRRAL
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEECCCCCHHHHHHHHH
EQGVSIAPGRMFTTGSQFDHCFRLNASFAWSEQSAKAIRILAKLIGQLTNERR
HCCCCCCCCCEEECCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TRYEQLAQQIRAQIQSKVWQAGDKLPSLRESCKQSGLSLMTVVQSYQLLESQGWIVARP
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECC
QSGYYVASRPTQLPQPQRGNKLHLDEQVDINTFIFNVLQAGKDPAIMPFGSAFPDPSLLL
CCCEEEECCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
QPRLSRALASVARKISPQSSVTNLPPGNESLRRNIAQRYAACGMNVSPEEIVITAGAMES
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHH
LSLSLQAVTQPGDWVVIESPAFYGALQAIERLRLKAIAITTDPQQGVDLEALEQVISQYP
HHEEEEEECCCCCEEEECCCHHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHCC
IKACWLMPHFQNPMGATMPWSQKQRLVTLLQQKAISLIEDDVYGELYFGAERLLPAKALD
CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHH
QHRQILHCSSFSKCLAPGFRVGWVAAGEHAQRIQHLQLMSTVSASVPTQLAIADYLSQGG
HHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
YDTHLRRLRRVMEQRMSTLHQAVVEHFPKNIKISHPAGGYFLWLELEPPFNASELYRRAL
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEECCCCCHHHHHHHHH
EQGVSIAPGRMFTTGSQFDHCFRLNASFAWSEQSAKAIRILAKLIGQLTNERR
HCCCCCCCCCEEECCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]