Click here to switch to the map view.

The map label for this gene is htrE [H]

Identifier: 51596245

GI number: 51596245

Start: 2251952

End: 2254543

Strand: Reverse

Name: htrE [H]

Synonym: YPTB1919

Alternate gene names: 51596245

Gene position: 2254543-2251952 (Counterclockwise)

Preceding gene: 51596246

Following gene: 51596244

Centisome position: 47.52

GC content: 49.5

Gene sequence:

>2592_bases
GTGAGAATCGCTCCTTGGCTCTCATGCTTGCTGACACAAAGCTTGCTGGTCACCCATATTTCGTCAGCGGCGGATAATAA
CAATCAAGACGACTATATATTTGATGATGCGTTAGTGCGCGGTTCATCACTCGGTTTAGGATCGATTGCCCGTTTTAATA
AAAAAAACAGTTACGACGCGGGCCAGTATCAAGTTGATATGTATATGAACAACAAATTTGTTGATCGCCTAAAAATGCTG
TTTGTTGATAAAGATAATAGTGTTGAACCTTGTCTGTCTGTTGCGCAATTATTACAAGCGGGTGTAAAAGAAGAGGCCCT
GAAAACAGCAGATCCTAAAACGCCATGTTTGGCCTTCCAATCCATACTTCCGGCCAGTGACTTTCGATTTGATCACGCTA
AATTGCGTTTTGATCTGTCCATCCCTCAGAAATTTGTTAAAAACGTGCCCCGTGGCTATGTTGACCCGAAAAATCTCACT
GCAGGCAATACGATTGGTTTCAGTAATTACAACTTGAATCAATATCACGTGGATTACAACAAAGAGGGGATTAAGCGCAC
CACAAACTCTACTTATCTGAGTCTGAACAGCGGTATCAATATCGGCATGTGGCGTTTTCGTCAGCAAGGATCCCTACGTT
ATGACGCTAGCCGAGGGACTAACTGGACATCTAATCGTCTGTACAGTCAGCGCGCCCTGCCGACTATCGGCAGTGAAATT
ACGCTGGGTGAAACCTTCAGTTCCGGCCAGTTTTTCTCCAGTCTTGGTTTTCTCGGTGTCGCGCTGTCAACGGATGATCG
CATGTTACCCGAATCGCAACGGGGCTATGCACCGGTTGTCCGTGGTATTGCCAGAACCAACGCGCGAGTGACGGTTTATC
AAAACAACCGTTCGATTTATCAAACCACGGTATCACCAGGCGCATTTGAATTTAATGATTTATCGGTCACCCATTTTGGG
GGTGACCTGACGGTTGAAATCAATGAAGCTGATGGCAGTGTAAGCACCTTTCAGGTGCCATTCGCCTCTGTCCCGGAATC
CCTACGCCCCGGCTATTCACGTTATAGCTTTGCGGCCGGGCAGGTTCGCGATGTTGGCAATAACGAGACGTTCAGCGAGT
TGACCTACCAACAGGGTATCAGTAATGCCATCACAGCTAACACAGGGATCCGGCTGGCTTCGGGTTATCAGGCTATCATG
CTGGGCGGTGTGTTTACCCACTATATTGGTGCGTTAGGTCTGAATACAACCTATTCCCATGCCCGTTTACCCGATGGGGA
ACAGCAGCAAGGCTGGATGGCAAAAGCCTCTTTTAGCCGTACCTTTCAACCCACGAATACCACGTTATCCGTGGCAGGTT
ACCGCTATTCAACTGACGGTTACCGTGATTTAAGCGATGTACTGGGCGTGCGGGCGACCAGCAATGACAGTAGCTGGAAT
TCCAGTACTTATCGGCAACGGAGCCGGGCTGAAATATCCCTCAACCAAAATTTTCACCGCTATGGTTCATTATATTTAAC
TGCCTCCTCACAAGATTATCGAGATGATCGTTCAAGGGATTCACAGTTACAACTGGGTTATTCCAACACCTTCTGGCGTA
ATACCAGTTTCAATCTGGCGATTTCACAGCAGAAAACCGGAGGCGCAAATAAAATTTACTTCGTTGACCCAGGCAGTGGC
ATGCCAGCCTCAAATGGTGCGAACACACTAGCCACCCGTGAAACTGTGGCCCAAATGTCAATTTCCTTCCCACTAGGGGG
TAGCTCGTCTGCACCTTATGTCTCGGCTGGCGCAGTAAACAGCAGAACTAGCGGAGCCAGCTATCAAACCTCACTTTCGG
GAACCATGGGCAGTGACCAAACCGCAGGCTACAGTGTGGATGTTGCCCGTAACGAGCCAACCAACGAAAATACCTTAAGC
GGCAGTTTGCAAAAACAGCTCCCGACCACCAGTTTGAGTGGCAGTGCCTCACGCAGCCCCGGTTACTGGCAAGGTTCTGC
CAGCGCCCGTGGATCGGTCGCATTCCACCGTGGCGGCGTGACGCTTGGCCCTTACCTAAGCGACACTTTCGCCCTGATAG
AAGCGAAGGGTGCCAGTGGTGCCAAAGTAATGTATGGGCAAGGGGCCCGTATTGACCGCTTCGGCTATGCATTGGTCCCG
ACATTGACACCGTATCGCTACAACACACTCTCTCTCGATCCCGATGGTATGGATTTCAATACTGAGTTGCAGGATGGAGA
GCGACAGATTGCGCCTTATGCTGGCTCTACGGTGAAAGTGACGTTCCGGACCCTCAACGGTTATCCCGCATTAATCACCA
TTAAAATGCCCGATGGCAGCCAATTGCCTATGGGAACCGTCGTTTATAATTACAACGGCAAGGGCACTAACGATAAGAAT
GACATCGTGGGTATGGTCGGGCAGTCGAGCCAAGCCTATCTACGGGCGGAGGAGCTCAGTGGTACCCTCACATTGGTGTG
GGGAGAGAGTAGCAAAGAACGCTGTCAGTTAGATTACGATCTGGGTAAGCCGACGGATAACGATAAACAGCTGTATAAAC
TCGATGCCTTGTGTGTCGCGGTACAGCAATAA

Upstream 100 bases:

>100_bases
GAACGTAGTTAATGATTACGGTGCCACCATTCCTAATAATTATTATCTGTAATCTGCTCCTGATGTTAATCCAATCTATC
ACCAGACACTGGGAACACTG

Downstream 100 bases:

>100_bases
ATCAGAGAAAACCGCATGCATCCTATTATCACGCGAAATACCACTCGTTACCGATTCAACCAGAATAGGCCAGTATTCTG
CCGTTTAATGAGCGTGTTAT

Product: outer membrane fimbrial usher porin

Products: NA

Alternate protein names: Heat shock protein E [H]

Number of amino acids: Translated: 863; Mature: 863

Protein sequence:

>863_residues
MRIAPWLSCLLTQSLLVTHISSAADNNNQDDYIFDDALVRGSSLGLGSIARFNKKNSYDAGQYQVDMYMNNKFVDRLKML
FVDKDNSVEPCLSVAQLLQAGVKEEALKTADPKTPCLAFQSILPASDFRFDHAKLRFDLSIPQKFVKNVPRGYVDPKNLT
AGNTIGFSNYNLNQYHVDYNKEGIKRTTNSTYLSLNSGINIGMWRFRQQGSLRYDASRGTNWTSNRLYSQRALPTIGSEI
TLGETFSSGQFFSSLGFLGVALSTDDRMLPESQRGYAPVVRGIARTNARVTVYQNNRSIYQTTVSPGAFEFNDLSVTHFG
GDLTVEINEADGSVSTFQVPFASVPESLRPGYSRYSFAAGQVRDVGNNETFSELTYQQGISNAITANTGIRLASGYQAIM
LGGVFTHYIGALGLNTTYSHARLPDGEQQQGWMAKASFSRTFQPTNTTLSVAGYRYSTDGYRDLSDVLGVRATSNDSSWN
SSTYRQRSRAEISLNQNFHRYGSLYLTASSQDYRDDRSRDSQLQLGYSNTFWRNTSFNLAISQQKTGGANKIYFVDPGSG
MPASNGANTLATRETVAQMSISFPLGGSSSAPYVSAGAVNSRTSGASYQTSLSGTMGSDQTAGYSVDVARNEPTNENTLS
GSLQKQLPTTSLSGSASRSPGYWQGSASARGSVAFHRGGVTLGPYLSDTFALIEAKGASGAKVMYGQGARIDRFGYALVP
TLTPYRYNTLSLDPDGMDFNTELQDGERQIAPYAGSTVKVTFRTLNGYPALITIKMPDGSQLPMGTVVYNYNGKGTNDKN
DIVGMVGQSSQAYLRAEELSGTLTLVWGESSKERCQLDYDLGKPTDNDKQLYKLDALCVAVQQ

Sequences:

>Translated_863_residues
MRIAPWLSCLLTQSLLVTHISSAADNNNQDDYIFDDALVRGSSLGLGSIARFNKKNSYDAGQYQVDMYMNNKFVDRLKML
FVDKDNSVEPCLSVAQLLQAGVKEEALKTADPKTPCLAFQSILPASDFRFDHAKLRFDLSIPQKFVKNVPRGYVDPKNLT
AGNTIGFSNYNLNQYHVDYNKEGIKRTTNSTYLSLNSGINIGMWRFRQQGSLRYDASRGTNWTSNRLYSQRALPTIGSEI
TLGETFSSGQFFSSLGFLGVALSTDDRMLPESQRGYAPVVRGIARTNARVTVYQNNRSIYQTTVSPGAFEFNDLSVTHFG
GDLTVEINEADGSVSTFQVPFASVPESLRPGYSRYSFAAGQVRDVGNNETFSELTYQQGISNAITANTGIRLASGYQAIM
LGGVFTHYIGALGLNTTYSHARLPDGEQQQGWMAKASFSRTFQPTNTTLSVAGYRYSTDGYRDLSDVLGVRATSNDSSWN
SSTYRQRSRAEISLNQNFHRYGSLYLTASSQDYRDDRSRDSQLQLGYSNTFWRNTSFNLAISQQKTGGANKIYFVDPGSG
MPASNGANTLATRETVAQMSISFPLGGSSSAPYVSAGAVNSRTSGASYQTSLSGTMGSDQTAGYSVDVARNEPTNENTLS
GSLQKQLPTTSLSGSASRSPGYWQGSASARGSVAFHRGGVTLGPYLSDTFALIEAKGASGAKVMYGQGARIDRFGYALVP
TLTPYRYNTLSLDPDGMDFNTELQDGERQIAPYAGSTVKVTFRTLNGYPALITIKMPDGSQLPMGTVVYNYNGKGTNDKN
DIVGMVGQSSQAYLRAEELSGTLTLVWGESSKERCQLDYDLGKPTDNDKQLYKLDALCVAVQQ
>Mature_863_residues
MRIAPWLSCLLTQSLLVTHISSAADNNNQDDYIFDDALVRGSSLGLGSIARFNKKNSYDAGQYQVDMYMNNKFVDRLKML
FVDKDNSVEPCLSVAQLLQAGVKEEALKTADPKTPCLAFQSILPASDFRFDHAKLRFDLSIPQKFVKNVPRGYVDPKNLT
AGNTIGFSNYNLNQYHVDYNKEGIKRTTNSTYLSLNSGINIGMWRFRQQGSLRYDASRGTNWTSNRLYSQRALPTIGSEI
TLGETFSSGQFFSSLGFLGVALSTDDRMLPESQRGYAPVVRGIARTNARVTVYQNNRSIYQTTVSPGAFEFNDLSVTHFG
GDLTVEINEADGSVSTFQVPFASVPESLRPGYSRYSFAAGQVRDVGNNETFSELTYQQGISNAITANTGIRLASGYQAIM
LGGVFTHYIGALGLNTTYSHARLPDGEQQQGWMAKASFSRTFQPTNTTLSVAGYRYSTDGYRDLSDVLGVRATSNDSSWN
SSTYRQRSRAEISLNQNFHRYGSLYLTASSQDYRDDRSRDSQLQLGYSNTFWRNTSFNLAISQQKTGGANKIYFVDPGSG
MPASNGANTLATRETVAQMSISFPLGGSSSAPYVSAGAVNSRTSGASYQTSLSGTMGSDQTAGYSVDVARNEPTNENTLS
GSLQKQLPTTSLSGSASRSPGYWQGSASARGSVAFHRGGVTLGPYLSDTFALIEAKGASGAKVMYGQGARIDRFGYALVP
TLTPYRYNTLSLDPDGMDFNTELQDGERQIAPYAGSTVKVTFRTLNGYPALITIKMPDGSQLPMGTVVYNYNGKGTNDKN
DIVGMVGQSSQAYLRAEELSGTLTLVWGESSKERCQLDYDLGKPTDNDKQLYKLDALCVAVQQ

Specific function: Probable porin-like protein necessary for the assembly of a pilin-type protein [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1786332, Length=858, Percent_Identity=30.7692307692308, Blast_Score=375, Evalue=1e-105,
Organism=Escherichia coli, GI1788427, Length=807, Percent_Identity=30.9789343246592, Blast_Score=354, Evalue=1e-98,
Organism=Escherichia coli, GI1790772, Length=872, Percent_Identity=29.3577981651376, Blast_Score=347, Evalue=2e-96,
Organism=Escherichia coli, GI1787172, Length=877, Percent_Identity=29.9885974914481, Blast_Score=346, Evalue=3e-96,
Organism=Escherichia coli, GI1789533, Length=834, Percent_Identity=30.3357314148681, Blast_Score=337, Evalue=2e-93,
Organism=Escherichia coli, GI1786744, Length=840, Percent_Identity=28.8095238095238, Blast_Score=331, Evalue=1e-91,
Organism=Escherichia coli, GI87081778, Length=832, Percent_Identity=26.0817307692308, Blast_Score=217, Evalue=2e-57,
Organism=Escherichia coli, GI1789610, Length=756, Percent_Identity=23.1481481481481, Blast_Score=118, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 94254; Mature: 94254

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIAPWLSCLLTQSLLVTHISSAADNNNQDDYIFDDALVRGSSLGLGSIARFNKKNSYDA
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHCCCCCCCCHHHHCCCCCCCCC
GQYQVDMYMNNKFVDRLKMLFVDKDNSVEPCLSVAQLLQAGVKEEALKTADPKTPCLAFQ
CCEEEEEEECCHHHHEEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHH
SILPASDFRFDHAKLRFDLSIPQKFVKNVPRGYVDPKNLTAGNTIGFSNYNLNQYHVDYN
HHCCCCCCEECCEEEEEEECCHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCEEEECCC
KEGIKRTTNSTYLSLNSGINIGMWRFRQQGSLRYDASRGTNWTSNRLYSQRALPTIGSEI
CCCCCCCCCCEEEEECCCCCEEEEEEECCCCEEEECCCCCCCCHHHHHHHHCCCCCCCEE
TLGETFSSGQFFSSLGFLGVALSTDDRMLPESQRGYAPVVRGIARTNARVTVYQNNRSIY
EECCCCCCCHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCEEE
QTTVSPGAFEFNDLSVTHFGGDLTVEINEADGSVSTFQVPFASVPESLRPGYSRYSFAAG
EEECCCCCEEECCEEEEEECCEEEEEEECCCCCEEEEECCHHHCCHHHCCCCCCEEECCC
QVRDVGNNETFSELTYQQGISNAITANTGIRLASGYQAIMLGGVFTHYIGALGLNTTYSH
CEEECCCCCHHHHHHHHHCCCCCEECCCCEEEECCCEEEHHHHHHHHHHHHHCCCCCCCC
ARLPDGEQQQGWMAKASFSRTFQPTNTTLSVAGYRYSTDGYRDLSDVLGVRATSNDSSWN
CCCCCCCCCCCEEEECCCCCEECCCCCEEEEEEEEECCCCCHHHHHHHCEEECCCCCCCC
SSTYRQRSRAEISLNQNFHRYGSLYLTASSQDYRDDRSRDSQLQLGYSNTFWRNTSFNLA
CHHHHHHCCEEEEECCCCEEECEEEEEECCCCCCCCCCCCCEEEECCCCCEEECCCEEEE
ISQQKTGGANKIYFVDPGSGMPASNGANTLATRETVAQMSISFPLGGSSSAPYVSAGAVN
EECCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHEEEECCCCCCCCCCEEEECCCC
SRTSGASYQTSLSGTMGSDQTAGYSVDVARNEPTNENTLSGSLQKQLPTTSLSGSASRSP
CCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC
GYWQGSASARGSVAFHRGGVTLGPYLSDTFALIEAKGASGAKVMYGQGARIDRFGYALVP
CCEECCCCCCCCEEEEECCEEECCCCCCEEEEEEECCCCCCEEEECCCCCEECCCEEEEC
TLTPYRYNTLSLDPDGMDFNTELQDGERQIAPYAGSTVKVTFRTLNGYPALITIKMPDGS
CCCCCEEEEEEECCCCCCCCCCCCCCCEEECCCCCCEEEEEEEEECCCCEEEEEECCCCC
QLPMGTVVYNYNGKGTNDKNDIVGMVGQSSQAYLRAEELSGTLTLVWGESSKERCQLDYD
CCCCEEEEEECCCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEEECCCCCCEEEEEEC
LGKPTDNDKQLYKLDALCVAVQQ
CCCCCCCCCCEEEEEEEEEEECC
>Mature Secondary Structure
MRIAPWLSCLLTQSLLVTHISSAADNNNQDDYIFDDALVRGSSLGLGSIARFNKKNSYDA
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHCCCCCCCCHHHHCCCCCCCCC
GQYQVDMYMNNKFVDRLKMLFVDKDNSVEPCLSVAQLLQAGVKEEALKTADPKTPCLAFQ
CCEEEEEEECCHHHHEEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHH
SILPASDFRFDHAKLRFDLSIPQKFVKNVPRGYVDPKNLTAGNTIGFSNYNLNQYHVDYN
HHCCCCCCEECCEEEEEEECCHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCEEEECCC
KEGIKRTTNSTYLSLNSGINIGMWRFRQQGSLRYDASRGTNWTSNRLYSQRALPTIGSEI
CCCCCCCCCCEEEEECCCCCEEEEEEECCCCEEEECCCCCCCCHHHHHHHHCCCCCCCEE
TLGETFSSGQFFSSLGFLGVALSTDDRMLPESQRGYAPVVRGIARTNARVTVYQNNRSIY
EECCCCCCCHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCEEE
QTTVSPGAFEFNDLSVTHFGGDLTVEINEADGSVSTFQVPFASVPESLRPGYSRYSFAAG
EEECCCCCEEECCEEEEEECCEEEEEEECCCCCEEEEECCHHHCCHHHCCCCCCEEECCC
QVRDVGNNETFSELTYQQGISNAITANTGIRLASGYQAIMLGGVFTHYIGALGLNTTYSH
CEEECCCCCHHHHHHHHHCCCCCEECCCCEEEECCCEEEHHHHHHHHHHHHHCCCCCCCC
ARLPDGEQQQGWMAKASFSRTFQPTNTTLSVAGYRYSTDGYRDLSDVLGVRATSNDSSWN
CCCCCCCCCCCEEEECCCCCEECCCCCEEEEEEEEECCCCCHHHHHHHCEEECCCCCCCC
SSTYRQRSRAEISLNQNFHRYGSLYLTASSQDYRDDRSRDSQLQLGYSNTFWRNTSFNLA
CHHHHHHCCEEEEECCCCEEECEEEEEECCCCCCCCCCCCCEEEECCCCCEEECCCEEEE
ISQQKTGGANKIYFVDPGSGMPASNGANTLATRETVAQMSISFPLGGSSSAPYVSAGAVN
EECCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHEEEECCCCCCCCCCEEEECCCC
SRTSGASYQTSLSGTMGSDQTAGYSVDVARNEPTNENTLSGSLQKQLPTTSLSGSASRSP
CCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC
GYWQGSASARGSVAFHRGGVTLGPYLSDTFALIEAKGASGAKVMYGQGARIDRFGYALVP
CCEECCCCCCCCEEEEECCEEECCCCCCEEEEEEECCCCCCEEEECCCCCEECCCEEEEC
TLTPYRYNTLSLDPDGMDFNTELQDGERQIAPYAGSTVKVTFRTLNGYPALITIKMPDGS
CCCCCEEEEEEECCCCCCCCCCCCCCCEEECCCCCCEEEEEEEEECCCCEEEEEECCCCC
QLPMGTVVYNYNGKGTNDKNDIVGMVGQSSQAYLRAEELSGTLTLVWGESSKERCQLDYD
CCCCEEEEEECCCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEEECCCCCCEEEEEEC
LGKPTDNDKQLYKLDALCVAVQQ
CCCCCCCCCCEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8102362; 8202364; 9278503 [H]