| Definition | Yersinia pseudotuberculosis IP 32953, complete genome. |
|---|---|
| Accession | NC_006155 |
| Length | 4,744,671 |
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The map label for this gene is 51596176
Identifier: 51596176
GI number: 51596176
Start: 2191649
End: 2192824
Strand: Reverse
Name: 51596176
Synonym: YPTB1841
Alternate gene names: NA
Gene position: 2192824-2191649 (Counterclockwise)
Preceding gene: 51596177
Following gene: 51596175
Centisome position: 46.22
GC content: 54.0
Gene sequence:
>1176_bases ATGTCTGCAACCGATTACCACCACGGTGTGCGCGTCATTGAAATCAGCGAAGGCACCCGCCCGATCCGCACTGTCAGTAC GGCGGTGGTCGGGATGGTCTGTACTTCCGATGATGCTGACGCCACCCTGTTTCCACTCAATACCCCGGTATTACTCACCG ATGTGCTGGCCGCCAGCGGCAAAGCCGGTGAAACCGGCACATTAGCCCATTCACTGGATGCTATCAGCGACCAAACCAAA CCACTGACCGTCGTTGTCCGGGTGGCGCAGGGTGAAACCGAAGCTGAAACCACGTCAAATATTATTGGCGGAATAGCACC AGATGGCCGTTATACCGGCATGAAAGCGCTGTTAGCGGCGCAGGGTAAGTTTGACGTCAAGCCCCGTATTTTAGGGGTTC CCGGTCATGACACTCTGGCGGTATCCACTGAGCTACTTTCCATCGCTCAGAGCCTACGTGCCTTTGCCTACATCAGCGCC TACGGTTGCAAAACCAAAGAAGAGGCCATTATCTACCGCGATAACTTCAGTCAGCGCGAAGCGATGGTGATTTGGCCCGA TTTCCTCAGTTGGGACACGGTCACTAACGCCGAAACCACCGCTTACGCCACGGCTCGCGCCCTCGGCTTGCGTGCCAAAA TTGATAATGATGTTGGCTGGCATAAAACGCTGTCTAACGTCGGGGTGAATGGCGTCACCGGTATCAGTGCGGATGTGTTC TGGGATCTGCAAAACAGCGCCACCGATGCCAATTTGCTTAACAGCAAAGATGTCACCACGCTGATCCGCAAAGATGGCTA CCGTTTTTGGGGTTCCCGCTCCTGTTCCGATGATCCGCTGTTTGCCTTTGAGAACTACACCCGCACCGCGCAGGTACTGG CTGACACTATGGCCGAGGCCCATATGTGGGCTAACGATAAGCCGCTTACCCCGTCACTGGCAAAAGACATTATTGAGGGT ATTCGCGCCAAAATGCGCGAGCTGAAATCATTGGGTTATCTGATTGATGGTGACTGCTGGTACGACGACAGCGTAAACGA TAAAGACACACTAAAGGCTGGCCGCCTGTTTATTGATTACGACTATACGCCTGTGCCGCCGCTGGAAGATTTAACCCTGC GCCAACGCATTACTGATCGTTATCTGGCTAATTTCGCCGCCGCCGTTAACAGCTAA
Upstream 100 bases:
>100_bases GGTTTCTCTGTTGTGCCACCCCTCACACAATCCTCATCACCTGCCCCGCGCACAGTAATCCGGCATCATAGCGAATGAAC GCTTAACCGGAGAAAACCGC
Downstream 100 bases:
>100_bases GGAGCGTAACTATGGCATTACCACGCAAGCTTAAGTTCCTCAATGTGTTCAATGACGGGAACAGCTATCAGGGGGTGGTT GAATCCATCACCTTGCCAAA
Product: bacteriophage P2 tail sheath protein
Products: NA
Alternate protein names: Phage Tail Sheath Protein; Bacteriophage Tail Sheath Protein; Phage Tail Sheath Protein; Phage Tail Sheath Protein FI; Tail Sheath Protein FI; Phage-Related Tail Sheath Protein; Tail Sheath Protein Bacteriophage; Bacteriophage Tail Sheath Protein; Phage-Related Tail Protein; Bacteriophage P2 Tail Sheath Protein GPFI; Pyocin R2_PP Tail Sheath Protein GpFI; Phage TAIL SHEATH PROTEIN; Pyocin R2_PP Tail Sheath Protein; Phage Tail Sheath-Like Protein; Prophage; Bacteriophage Tail Sheath Protein FI; Phage-Related Tail Sheath Protein; Prophage Tail Sheath; Phage P2 Tail Sheath FI-Like Protein; Bacteriophage Contractile Tail Sheath Protein; Bacteriophage P2 Tail Sheath Protein
Number of amino acids: Translated: 391; Mature: 390
Protein sequence:
>391_residues MSATDYHHGVRVIEISEGTRPIRTVSTAVVGMVCTSDDADATLFPLNTPVLLTDVLAASGKAGETGTLAHSLDAISDQTK PLTVVVRVAQGETEAETTSNIIGGIAPDGRYTGMKALLAAQGKFDVKPRILGVPGHDTLAVSTELLSIAQSLRAFAYISA YGCKTKEEAIIYRDNFSQREAMVIWPDFLSWDTVTNAETTAYATARALGLRAKIDNDVGWHKTLSNVGVNGVTGISADVF WDLQNSATDANLLNSKDVTTLIRKDGYRFWGSRSCSDDPLFAFENYTRTAQVLADTMAEAHMWANDKPLTPSLAKDIIEG IRAKMRELKSLGYLIDGDCWYDDSVNDKDTLKAGRLFIDYDYTPVPPLEDLTLRQRITDRYLANFAAAVNS
Sequences:
>Translated_391_residues MSATDYHHGVRVIEISEGTRPIRTVSTAVVGMVCTSDDADATLFPLNTPVLLTDVLAASGKAGETGTLAHSLDAISDQTK PLTVVVRVAQGETEAETTSNIIGGIAPDGRYTGMKALLAAQGKFDVKPRILGVPGHDTLAVSTELLSIAQSLRAFAYISA YGCKTKEEAIIYRDNFSQREAMVIWPDFLSWDTVTNAETTAYATARALGLRAKIDNDVGWHKTLSNVGVNGVTGISADVF WDLQNSATDANLLNSKDVTTLIRKDGYRFWGSRSCSDDPLFAFENYTRTAQVLADTMAEAHMWANDKPLTPSLAKDIIEG IRAKMRELKSLGYLIDGDCWYDDSVNDKDTLKAGRLFIDYDYTPVPPLEDLTLRQRITDRYLANFAAAVNS >Mature_390_residues SATDYHHGVRVIEISEGTRPIRTVSTAVVGMVCTSDDADATLFPLNTPVLLTDVLAASGKAGETGTLAHSLDAISDQTKP LTVVVRVAQGETEAETTSNIIGGIAPDGRYTGMKALLAAQGKFDVKPRILGVPGHDTLAVSTELLSIAQSLRAFAYISAY GCKTKEEAIIYRDNFSQREAMVIWPDFLSWDTVTNAETTAYATARALGLRAKIDNDVGWHKTLSNVGVNGVTGISADVFW DLQNSATDANLLNSKDVTTLIRKDGYRFWGSRSCSDDPLFAFENYTRTAQVLADTMAEAHMWANDKPLTPSLAKDIIEGI RAKMRELKSLGYLIDGDCWYDDSVNDKDTLKAGRLFIDYDYTPVPPLEDLTLRQRITDRYLANFAAAVNS
Specific function: Unknown
COG id: COG3497
COG function: function code R; Phage tail sheath protein FI
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42633; Mature: 42502
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSATDYHHGVRVIEISEGTRPIRTVSTAVVGMVCTSDDADATLFPLNTPVLLTDVLAASG CCCCCCCCCEEEEEECCCCCCHHHHHHHHEEEEEECCCCCEEEEECCCCHHHHHHHHHCC KAGETGTLAHSLDAISDQTKPLTVVVRVAQGETEAETTSNIIGGIAPDGRYTGMKALLAA CCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHC QGKFDVKPRILGVPGHDTLAVSTELLSIAQSLRAFAYISAYGCKTKEEAIIYRDNFSQRE CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCC AMVIWPDFLSWDTVTNAETTAYATARALGLRAKIDNDVGWHKTLSNVGVNGVTGISADVF EEEEECCCCCCCCCCCCCHHHHHHHHHHEEEEECCCCCCHHHHHHHCCCCCCCCCCCEEE WDLQNSATDANLLNSKDVTTLIRKDGYRFWGSRSCSDDPLFAFENYTRTAQVLADTMAEA EECCCCCCCCHHCCCCHHHHHHHHCCCEECCCCCCCCCCEEEECCCHHHHHHHHHHHHHH HMWANDKPLTPSLAKDIIEGIRAKMRELKSLGYLIDGDCWYDDSVNDKDTLKAGRLFIDY HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCEEECCCCCCHHHHHHCEEEEEE DYTPVPPLEDLTLRQRITDRYLANFAAAVNS CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SATDYHHGVRVIEISEGTRPIRTVSTAVVGMVCTSDDADATLFPLNTPVLLTDVLAASG CCCCCCCCEEEEEECCCCCCHHHHHHHHEEEEEECCCCCEEEEECCCCHHHHHHHHHCC KAGETGTLAHSLDAISDQTKPLTVVVRVAQGETEAETTSNIIGGIAPDGRYTGMKALLAA CCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHC QGKFDVKPRILGVPGHDTLAVSTELLSIAQSLRAFAYISAYGCKTKEEAIIYRDNFSQRE CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCC AMVIWPDFLSWDTVTNAETTAYATARALGLRAKIDNDVGWHKTLSNVGVNGVTGISADVF EEEEECCCCCCCCCCCCCHHHHHHHHHHEEEEECCCCCCHHHHHHHCCCCCCCCCCCEEE WDLQNSATDANLLNSKDVTTLIRKDGYRFWGSRSCSDDPLFAFENYTRTAQVLADTMAEA EECCCCCCCCHHCCCCHHHHHHHHCCCEECCCCCCCCCCEEEECCCHHHHHHHHHHHHHH HMWANDKPLTPSLAKDIIEGIRAKMRELKSLGYLIDGDCWYDDSVNDKDTLKAGRLFIDY HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCEEECCCCCCHHHHHHCEEEEEE DYTPVPPLEDLTLRQRITDRYLANFAAAVNS CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA