| Definition | Yersinia pseudotuberculosis IP 32953, complete genome. |
|---|---|
| Accession | NC_006155 |
| Length | 4,744,671 |
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The map label for this gene is stfR [C]
Identifier: 51596154
GI number: 51596154
Start: 2165504
End: 2167639
Strand: Direct
Name: stfR [C]
Synonym: YPTB1819
Alternate gene names: 51596154
Gene position: 2165504-2167639 (Clockwise)
Preceding gene: 51596153
Following gene: 51596155
Centisome position: 45.64
GC content: 49.2
Gene sequence:
>2136_bases GTGAGCGTAACAGTTTCCGGCATTATGATTAACCCGGTCGGCGAGCCAGTAGTCAATGCACAGATCACCCTCACAGCGGT TACCAATAGCCTTACTGTGCTCAATGCCTTTTCGGCCACAGTCAGAACGGACGGGGTGGGTACATATCGCATCCAGTTAG AAGAGGGCAGCTACTCCATTACAGTGGCTGCGAATGGCCGTAGTTTTGTTTATGGCGCGGTCACGCTGGATAACACCACA GGCCCCAGCACACTCAATCAATTGCTGAAGCAGCAGATCATGGAGTCGGAACTCACACCTGATGTGATCCTGTACTTCCG CCAGATTCAACAGCAGGTCGCAAATGATCTTGCAACAATAAAAGTTTTAGAAATCAGTGCTACAGATGCGGCAGAGAGCG CAGGTCATTCACGCGATGAGGCTATGTTGTATGCAAAGGATTTGTCTGAGGCGCTTGCAACAGCCAAGGGGTATCGCGAC CAAGCGGGCATAAGTGCGGATGCATCTGCACTCTCTCAGCAGGAAGCGGCGATAAGTGAAACGAGTGCTAAAGCCAGTGC CGATTCAGCATTACTGTCAGAGCAAAATGCGCTTTCATATCGCGACTCAGCCCAGTCAGCAGCGGCCACAGCAGCCGATG ATGCGTCAACACTTGCAGCCGAGCGGACAGCAGAAAAAATTAAGTTACAAGTTAAAACTGATGCGGATCGTGCCGAAGCG GCACGTATAGCAAGTGAACAGATAAAATCCTCGGTAGATGACACAGCTCAGACAGTTGCTCAACAGCATGGCGAAACAAC ACAAGCAGCTATCGCCGCACGAGATAGTGAAGTCAAGGCAACAACCGCGGCAAACAGTGCTGTTCAATCGGAAGCGTTAG CGGCAATCAGTGCGGAAACAGCACGACAGAACGCAGGAATATCTACAGTAGATAAAAATGCAGCAAAAGGTTTTAGAGAT GAGGCTGAGGGTTTTGCTCAGCAGGCGCATGCTTCAGCAGAAAGCGTCGGCGATGTAATGCCAAAAACTGGTGGTGCGTT CACAGGCCCAGTAGAGTTGGCAGGTGATGCCACAGAGCCATTAGAGCCTGTCACATTTCAACAGTTTGAAAGGACCGGTG GCGAATTTCTATTAAGTGTGAAGTGGCATATGAGCCGAAATTATATTCCTGCGGGCTGGGCCCCAGCGGACGGTCAATTA CTATCACGCAATCTATTTCCATTCGCTTTAGCTGAAATATTAAGCGCGAAATATCCGATCGTTGCGGATGACTCGTGGTT ATTTTACAAAGACCAGCGATCTAGTTTTTCGGTCGGTGACGGAAGTACAACATTCAGAATTCCGGATTTGAACGGCAAGT CCCATGACAGCATGGGAAGAGTGTTTTTGGGGGGGGACGGTAAGAACTCCCTCGGAGAAATGGGGAGAATCCAAGGCGAC GCGAGTAGAAGAATTACTGGGACGTTCGGTGGAATTGGCGGGCAACTTAATGTTTCGTATGGTCTGGTTATAGGTGAGAC TGCCGGAGCTTTTACAAGAACTGGCGTGGCAACTGGAAGGCCGGTTCCATCAAATATTGGGGAGCCCGCGCTAGGTGAGC TTGGTGTTAGTTTTGACTCTGCATTAGTAAACCCCACTGCAATCGAAAATCGCCCCATCAACGCCACGGGCTGCTACATA ATAAAATTGGCAGGGTCGGCTCTCAATGAAGGGCAAATTAACGCGCTCGAATTAGCAACGCAGATAACACAACTTGCATC GCGCACTACAACTTTAGAGGCTGACGCGTTTACTGCTAATAAAATAGCAAATACGCCATGGATTCCGCTAACACTTCAAA ACGGCTGGTTACCCCTTCAGGGTTATCACAATGCAATCTATCGGAAAATAAATGGAGTCGTATACGTTGAAGGAGTTATC ACCGCAGGTGCATGGGGAGAAAGCGTGGTTATTGCAAATCTACCCGCTGGATATAGGCCATCAGCTGATCAAGTGAGTGT CATGCCAATTTCAGGTAGCACGCAGGGTGGCATTACAGCGCAATCGAGAATTGCGTTGTGGACGGATGGGGCGTTAAGAA TTTATGGAGTAACAGGAAACGGAGATATTGGAATAAAGTCACACTGGGTGATTTAA
Upstream 100 bases:
>100_bases TGCAGCACTATCAAGCATTTAGCGATCAGTTGGGGGTTAAGCAAAATTCTGAGAGTTTCGCCCAGCAATTGAAAGAAGCG CAGTACCAGGGAGGTGGGCA
Downstream 100 bases:
>100_bases CGAGAATATTATGAAAAAACTAAATAAATTAGATAGTGATGGCTTCTATATTGAAGATTATATCGAGGGATATTTACCCA AGAATTGGACAGATGATTTA
Product: hypothetical protein
Products: NA
Alternate protein names: Phage Tail Protein
Number of amino acids: Translated: 711; Mature: 710
Protein sequence:
>711_residues MSVTVSGIMINPVGEPVVNAQITLTAVTNSLTVLNAFSATVRTDGVGTYRIQLEEGSYSITVAANGRSFVYGAVTLDNTT GPSTLNQLLKQQIMESELTPDVILYFRQIQQQVANDLATIKVLEISATDAAESAGHSRDEAMLYAKDLSEALATAKGYRD QAGISADASALSQQEAAISETSAKASADSALLSEQNALSYRDSAQSAAATAADDASTLAAERTAEKIKLQVKTDADRAEA ARIASEQIKSSVDDTAQTVAQQHGETTQAAIAARDSEVKATTAANSAVQSEALAAISAETARQNAGISTVDKNAAKGFRD EAEGFAQQAHASAESVGDVMPKTGGAFTGPVELAGDATEPLEPVTFQQFERTGGEFLLSVKWHMSRNYIPAGWAPADGQL LSRNLFPFALAEILSAKYPIVADDSWLFYKDQRSSFSVGDGSTTFRIPDLNGKSHDSMGRVFLGGDGKNSLGEMGRIQGD ASRRITGTFGGIGGQLNVSYGLVIGETAGAFTRTGVATGRPVPSNIGEPALGELGVSFDSALVNPTAIENRPINATGCYI IKLAGSALNEGQINALELATQITQLASRTTTLEADAFTANKIANTPWIPLTLQNGWLPLQGYHNAIYRKINGVVYVEGVI TAGAWGESVVIANLPAGYRPSADQVSVMPISGSTQGGITAQSRIALWTDGALRIYGVTGNGDIGIKSHWVI
Sequences:
>Translated_711_residues MSVTVSGIMINPVGEPVVNAQITLTAVTNSLTVLNAFSATVRTDGVGTYRIQLEEGSYSITVAANGRSFVYGAVTLDNTT GPSTLNQLLKQQIMESELTPDVILYFRQIQQQVANDLATIKVLEISATDAAESAGHSRDEAMLYAKDLSEALATAKGYRD QAGISADASALSQQEAAISETSAKASADSALLSEQNALSYRDSAQSAAATAADDASTLAAERTAEKIKLQVKTDADRAEA ARIASEQIKSSVDDTAQTVAQQHGETTQAAIAARDSEVKATTAANSAVQSEALAAISAETARQNAGISTVDKNAAKGFRD EAEGFAQQAHASAESVGDVMPKTGGAFTGPVELAGDATEPLEPVTFQQFERTGGEFLLSVKWHMSRNYIPAGWAPADGQL LSRNLFPFALAEILSAKYPIVADDSWLFYKDQRSSFSVGDGSTTFRIPDLNGKSHDSMGRVFLGGDGKNSLGEMGRIQGD ASRRITGTFGGIGGQLNVSYGLVIGETAGAFTRTGVATGRPVPSNIGEPALGELGVSFDSALVNPTAIENRPINATGCYI IKLAGSALNEGQINALELATQITQLASRTTTLEADAFTANKIANTPWIPLTLQNGWLPLQGYHNAIYRKINGVVYVEGVI TAGAWGESVVIANLPAGYRPSADQVSVMPISGSTQGGITAQSRIALWTDGALRIYGVTGNGDIGIKSHWVI >Mature_710_residues SVTVSGIMINPVGEPVVNAQITLTAVTNSLTVLNAFSATVRTDGVGTYRIQLEEGSYSITVAANGRSFVYGAVTLDNTTG PSTLNQLLKQQIMESELTPDVILYFRQIQQQVANDLATIKVLEISATDAAESAGHSRDEAMLYAKDLSEALATAKGYRDQ AGISADASALSQQEAAISETSAKASADSALLSEQNALSYRDSAQSAAATAADDASTLAAERTAEKIKLQVKTDADRAEAA RIASEQIKSSVDDTAQTVAQQHGETTQAAIAARDSEVKATTAANSAVQSEALAAISAETARQNAGISTVDKNAAKGFRDE AEGFAQQAHASAESVGDVMPKTGGAFTGPVELAGDATEPLEPVTFQQFERTGGEFLLSVKWHMSRNYIPAGWAPADGQLL SRNLFPFALAEILSAKYPIVADDSWLFYKDQRSSFSVGDGSTTFRIPDLNGKSHDSMGRVFLGGDGKNSLGEMGRIQGDA SRRITGTFGGIGGQLNVSYGLVIGETAGAFTRTGVATGRPVPSNIGEPALGELGVSFDSALVNPTAIENRPINATGCYII KLAGSALNEGQINALELATQITQLASRTTTLEADAFTANKIANTPWIPLTLQNGWLPLQGYHNAIYRKINGVVYVEGVIT AGAWGESVVIANLPAGYRPSADQVSVMPISGSTQGGITAQSRIALWTDGALRIYGVTGNGDIGIKSHWVI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 74499; Mature: 74367
Theoretical pI: Translated: 4.58; Mature: 4.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVTVSGIMINPVGEPVVNAQITLTAVTNSLTVLNAFSATVRTDGVGTYRIQLEEGSYSI CEEEEEEEEECCCCCCCCCCEEEEEEECCCEEEEEHHEHEEEECCCEEEEEEEECCCEEE TVAANGRSFVYGAVTLDNTTGPSTLNQLLKQQIMESELTPDVILYFRQIQQQVANDLATI EEEECCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEE KVLEISATDAAESAGHSRDEAMLYAKDLSEALATAKGYRDQAGISADASALSQQEAAISE EEEEEECCCHHHHCCCCCCHHEEEHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHH TSAKASADSALLSEQNALSYRDSAQSAAATAADDASTLAAERTAEKIKLQVKTDADRAEA HCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEEECCCCHHHH ARIASEQIKSSVDDTAQTVAQQHGETTQAAIAARDSEVKATTAANSAVQSEALAAISAET HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEECCCCCEEEHHHHHHHHHHHHHHHHHHH ARQNAGISTVDKNAAKGFRDEAEGFAQQAHASAESVGDVMPKTGGAFTGPVELAGDATEP HHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCC LEPVTFQQFERTGGEFLLSVKWHMSRNYIPAGWAPADGQLLSRNLFPFALAEILSAKYPI CCCCHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCE VADDSWLFYKDQRSSFSVGDGSTTFRIPDLNGKSHDSMGRVFLGGDGKNSLGEMGRIQGD EECCCEEEEECCCCCEECCCCCEEEEECCCCCCCCCCCCEEEECCCCCCCHHHHHCCCCC ASRRITGTFGGIGGQLNVSYGLVIGETAGAFTRTGVATGRPVPSNIGEPALGELGVSFDS CCCEEEEECCCCCCEEEEEEEEEEECCCCCCEECCCCCCCCCCCCCCCCCHHHCCCCHHH ALVNPTAIENRPINATGCYIIKLAGSALNEGQINALELATQITQLASRTTTLEADAFTAN HCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEECCCCCHH KIANTPWIPLTLQNGWLPLQGYHNAIYRKINGVVYVEGVITAGAWGESVVIANLPAGYRP HCCCCCEEEEEECCCCEECCHHHHHHHHHHCCEEEEEEEEEECCCCCEEEEEECCCCCCC SADQVSVMPISGSTQGGITAQSRIALWTDGALRIYGVTGNGDIGIKSHWVI CCCCEEEEEECCCCCCCCEECCEEEEEECCEEEEEEEECCCCCCCCEECCC >Mature Secondary Structure SVTVSGIMINPVGEPVVNAQITLTAVTNSLTVLNAFSATVRTDGVGTYRIQLEEGSYSI EEEEEEEEECCCCCCCCCCEEEEEEECCCEEEEEHHEHEEEECCCEEEEEEEECCCEEE TVAANGRSFVYGAVTLDNTTGPSTLNQLLKQQIMESELTPDVILYFRQIQQQVANDLATI EEEECCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEE KVLEISATDAAESAGHSRDEAMLYAKDLSEALATAKGYRDQAGISADASALSQQEAAISE EEEEEECCCHHHHCCCCCCHHEEEHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHH TSAKASADSALLSEQNALSYRDSAQSAAATAADDASTLAAERTAEKIKLQVKTDADRAEA HCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCEEEEEEEECCCCHHHH ARIASEQIKSSVDDTAQTVAQQHGETTQAAIAARDSEVKATTAANSAVQSEALAAISAET HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEECCCCCEEEHHHHHHHHHHHHHHHHHHH ARQNAGISTVDKNAAKGFRDEAEGFAQQAHASAESVGDVMPKTGGAFTGPVELAGDATEP HHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCC LEPVTFQQFERTGGEFLLSVKWHMSRNYIPAGWAPADGQLLSRNLFPFALAEILSAKYPI CCCCHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCE VADDSWLFYKDQRSSFSVGDGSTTFRIPDLNGKSHDSMGRVFLGGDGKNSLGEMGRIQGD EECCCEEEEECCCCCEECCCCCEEEEECCCCCCCCCCCCEEEECCCCCCCHHHHHCCCCC ASRRITGTFGGIGGQLNVSYGLVIGETAGAFTRTGVATGRPVPSNIGEPALGELGVSFDS CCCEEEEECCCCCCEEEEEEEEEEECCCCCCEECCCCCCCCCCCCCCCCCHHHCCCCHHH ALVNPTAIENRPINATGCYIIKLAGSALNEGQINALELATQITQLASRTTTLEADAFTAN HCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEECCCCCHH KIANTPWIPLTLQNGWLPLQGYHNAIYRKINGVVYVEGVITAGAWGESVVIANLPAGYRP HCCCCCEEEEEECCCCEECCHHHHHHHHHHCCEEEEEEEEEECCCCCEEEEEECCCCCCC SADQVSVMPISGSTQGGITAQSRIALWTDGALRIYGVTGNGDIGIKSHWVI CCCCEEEEEECCCCCCCCEECCEEEEEECCEEEEEEEECCCCCCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA