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The map label for this gene is rdgC

Identifier: 51596130

GI number: 51596130

Start: 2143218

End: 2144354

Strand: Direct

Name: rdgC

Synonym: YPTB1795

Alternate gene names: 51596130

Gene position: 2143218-2144354 (Clockwise)

Preceding gene: 51596129

Following gene: 51596131

Centisome position: 45.17

GC content: 51.45

Gene sequence:

>1137_bases
ATGAGCATTAATTTCAAGAATGTATTGATTTACAAATTATCTCGCGATGTTTCTTTCGCTGATTTGGAAGAGCAAATGGC
GCAGTTCGCATTCACACCGTGCGGCAGTCAGGATATGGCGAAAACCGGTTGGATATCGCCAATGGGTAACGAAAGCGCAA
CGCTTGCGCATGTGGCTAACAAGCAAATCCTTATCACATTGCAGTGTGAAAAAAAGGATTTACCCGCCCCGGTTATCGCT
CGTGAGTTGGCGAGTAAAGTTGAGCGTTTGGAGCAAGAGCAACATCGTAAACTGAAAAAAACAGAAAAAGACTCGCTGAA
AGATGAAGTTATCCAGACTCTATTGCCTCGGGCCTTTAGCAAATACTCTACAACATCCATCTGGATTAACGCAGGGGCCG
GGTTAATTATCATTGATGCTGCCAGCGCGCGGAAAGCTGAAAATGCGTTGGCATTGCTGCGCAAAACCATGGGTTCTCTG
CCTGTGGTCCCTTTGACACTGGAGACCCCGATTGAACTGACGTTAACCGAGTGGTTGCGCTCTGGCGCTGCGCCTGCGGG
ATTCATCTTACAGGAAGAAGCCGAGCTTAAAGCCGTTTTGGAGCAGGGCGGCATTCTGCGCAGTAAACATCAGGATTTAG
TCAGTGACGAGATCCGTGGGCATATCGCCGCCGGTAAGCTGGTGACCAAGTTGGCATTGGAGTGGCAGGGGCGCATTAGC
TTTATGCTGTCCGACGATGGCAGCCTGAAGAGAGTGAAATACAGCACCACGCTGCTGGAGCGGAACGACGATATCGACCG
CGAGGATTACGCGCAGCGTTTTGATGCCGATTTTATTTTGATGGCGGGTGAACTGGCCGCACTGATTGCCCATCTAGTGG
ATGCGCTGGGCGGCGAGGCAACCAGCAGTTCATGGGTAGATTTGGATGGAGTAGAACGGGACGATGATGATCGCTATCCA
GAAGCAGTGAACTTCACCAAGGCGAAAGGAAAAGCCTCAATTTCGGGGCTACAGCGTGAACTCCGTATTGGCTATAACCG
TGCCGCATGGCTGATTGAAAGAATGCAGGCTGAAGGCATTGTGTCCCAACCCGCACCAGACGGGACCCGCGAAGTGCTTG
CTGGGGAGGGCGCGTAA

Upstream 100 bases:

>100_bases
TATTAGGCTACAAGCGTCTCTGGAACACAAATACCAAGAGTCATTGCAGCAGACCGCCGACCACGGTTTGCAAAATAATA
AAATTACCGAGGACTGACCA

Downstream 100 bases:

>100_bases
TGGTGATCAAACCACACGTACCCAATGCCGAAAGGGTTGGTATCAATAACGCAGTAAGATCCATGCAATTAGCTGGCCGT
ATAAGTGATGCAAACAGCCA

Product: recombination associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 377

Protein sequence:

>378_residues
MSINFKNVLIYKLSRDVSFADLEEQMAQFAFTPCGSQDMAKTGWISPMGNESATLAHVANKQILITLQCEKKDLPAPVIA
RELASKVERLEQEQHRKLKKTEKDSLKDEVIQTLLPRAFSKYSTTSIWINAGAGLIIIDAASARKAENALALLRKTMGSL
PVVPLTLETPIELTLTEWLRSGAAPAGFILQEEAELKAVLEQGGILRSKHQDLVSDEIRGHIAAGKLVTKLALEWQGRIS
FMLSDDGSLKRVKYSTTLLERNDDIDREDYAQRFDADFILMAGELAALIAHLVDALGGEATSSSWVDLDGVERDDDDRYP
EAVNFTKAKGKASISGLQRELRIGYNRAAWLIERMQAEGIVSQPAPDGTREVLAGEGA

Sequences:

>Translated_378_residues
MSINFKNVLIYKLSRDVSFADLEEQMAQFAFTPCGSQDMAKTGWISPMGNESATLAHVANKQILITLQCEKKDLPAPVIA
RELASKVERLEQEQHRKLKKTEKDSLKDEVIQTLLPRAFSKYSTTSIWINAGAGLIIIDAASARKAENALALLRKTMGSL
PVVPLTLETPIELTLTEWLRSGAAPAGFILQEEAELKAVLEQGGILRSKHQDLVSDEIRGHIAAGKLVTKLALEWQGRIS
FMLSDDGSLKRVKYSTTLLERNDDIDREDYAQRFDADFILMAGELAALIAHLVDALGGEATSSSWVDLDGVERDDDDRYP
EAVNFTKAKGKASISGLQRELRIGYNRAAWLIERMQAEGIVSQPAPDGTREVLAGEGA
>Mature_377_residues
SINFKNVLIYKLSRDVSFADLEEQMAQFAFTPCGSQDMAKTGWISPMGNESATLAHVANKQILITLQCEKKDLPAPVIAR
ELASKVERLEQEQHRKLKKTEKDSLKDEVIQTLLPRAFSKYSTTSIWINAGAGLIIIDAASARKAENALALLRKTMGSLP
VVPLTLETPIELTLTEWLRSGAAPAGFILQEEAELKAVLEQGGILRSKHQDLVSDEIRGHIAAGKLVTKLALEWQGRISF
MLSDDGSLKRVKYSTTLLERNDDIDREDYAQRFDADFILMAGELAALIAHLVDALGGEATSSSWVDLDGVERDDDDRYPE
AVNFTKAKGKASISGLQRELRIGYNRAAWLIERMQAEGIVSQPAPDGTREVLAGEGA

Specific function: May be involved in recombination [H]

COG id: COG2974

COG function: function code L; DNA recombination-dependent growth factor C

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rdgC family [H]

Homologues:

Organism=Escherichia coli, GI1786592, Length=298, Percent_Identity=63.758389261745, Blast_Score=402, Evalue=1e-113,
Organism=Escherichia coli, GI1787117, Length=67, Percent_Identity=56.7164179104478, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007476 [H]

Pfam domain/function: PF04381 RdgC [H]

EC number: NA

Molecular weight: Translated: 41607; Mature: 41476

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSINFKNVLIYKLSRDVSFADLEEQMAQFAFTPCGSQDMAKTGWISPMGNESATLAHVAN
CCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCHHEECC
KQILITLQCEKKDLPAPVIARELASKVERLEQEQHRKLKKTEKDSLKDEVIQTLLPRAFS
CEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KYSTTSIWINAGAGLIIIDAASARKAENALALLRKTMGSLPVVPLTLETPIELTLTEWLR
HCCCEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHH
SGAAPAGFILQEEAELKAVLEQGGILRSKHQDLVSDEIRGHIAAGKLVTKLALEWQGRIS
CCCCCCCEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEE
FMLSDDGSLKRVKYSTTLLERNDDIDREDYAQRFDADFILMAGELAALIAHLVDALGGEA
EEECCCCCEEEEEEHHHHHHCCCCCCHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCCC
TSSSWVDLDGVERDDDDRYPEAVNFTKAKGKASISGLQRELRIGYNRAAWLIERMQAEGI
CCCCCEECCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
VSQPAPDGTREVLAGEGA
CCCCCCCCCHHHHCCCCC
>Mature Secondary Structure 
SINFKNVLIYKLSRDVSFADLEEQMAQFAFTPCGSQDMAKTGWISPMGNESATLAHVAN
CCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCHHEECC
KQILITLQCEKKDLPAPVIARELASKVERLEQEQHRKLKKTEKDSLKDEVIQTLLPRAFS
CEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KYSTTSIWINAGAGLIIIDAASARKAENALALLRKTMGSLPVVPLTLETPIELTLTEWLR
HCCCEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHH
SGAAPAGFILQEEAELKAVLEQGGILRSKHQDLVSDEIRGHIAAGKLVTKLALEWQGRIS
CCCCCCCEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEE
FMLSDDGSLKRVKYSTTLLERNDDIDREDYAQRFDADFILMAGELAALIAHLVDALGGEA
EEECCCCCEEEEEEHHHHHHCCCCCCHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCCC
TSSSWVDLDGVERDDDDRYPEAVNFTKAKGKASISGLQRELRIGYNRAAWLIERMQAEGI
CCCCCEECCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
VSQPAPDGTREVLAGEGA
CCCCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 14528314 [H]